TCONS_00004584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004584
Unique NameTCONS_00004584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length715

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004584 ID=TCONS_00004584|Name=TCONS_00004584|organism=Clytia hemisphaerica|type=transcript|length=715bp
CGCCTGAAACAACCAAAAATAATAAAGGTTACACCTGAAAAGCCTAATAT
CAAGCTGAGAATAATCAAAGTGAAAACTGTGGAAGATGTCATGGATTCAG
CTCTTTTATGTGACCTTGTTGACCAATTGAAAACTGATCTAAAAACATGT
GATAAGACTATAATTTATTGTCATTCGTATCCTGCTTGTGGTGATGTTTA
TTCGAAAATAAAAGGTCATTTTCCATGTGGATTTGATTTAACTTTGCTCG
TTGAAATTTATCATGGAAGTACTGAGGATGAAATACAGCAAGAAATATTG
GATGATTTCTCAAATAATAACAGCTCTACACGCATAGTCATAGCTACAAA
TGCTCTTGGTGTTGGAGTTAACATTCGTAATATTCGTAATATCGTTCATT
GGGGTGTCCCATCAGATATCGAGGGCTATGTTCAAGAAATTGGACGTGCT
GGTCGTGATGAAAAAGATAGTTCGGCAACACTATTCTATCGAGGTAATGA
CTTAACACACTGTAAAGACAAAGATATGGTAACCTATATAAAAAACGAGC
AGAAGGAATGTCGTCGAAAGCTTTTaatgtcatttttcaaaagtgagCAT
TCAACCTCAGTAGAGAAGCAATTGTACATTgtgttcacaaaatttaatgg
tTTGATTTTGGATAGCACAATGTTATGAAGCTATGATGATGAAACattat
ttatttatgattttc
Run BLAST on NCBI

protein sequence of TCONS_00004584-protein

>TCONS_00004584-protein ID=TCONS_00004584-protein|Name=TCONS_00004584-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
RLKQPKIIKVTPEKPNIKLRIIKVKTVEDVMDSALLCDLVDQLKTDLKTC
DKTIIYCHSYPACGDVYSKIKGHFPCGFDLTLLVEIYHGSTEDEIQQEIL
DDFSNNNSSTRIVIATNALGVGVNIRNIRNIVHWGVPSDIEGYVQEIGRA
GRDEKDSSATLFYRGNDLTHCKDKDMVTYIKNEQKECRRKLLMSFFKSEH
STSVEKQLYIVFTKFNGLILDSTML
Run BLAST on NCBI

transcript from alignment at sc0000045:262858..263572

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004584 ID=TCONS_00004584|Name=TCONS_00004584|organism=Clytia hemisphaerica|type=transcript|length=715bp|location=Sequence derived from alignment at sc0000045:262858..263572 (Clytia hemisphaerica)
gaaaatcataaataaataatGTTTCATCATCATAGCTTCATAACATTGTG
CTATCCAAAATCAAaccattaaattttgtgaacacAATGTACAATTGCTT
CTCTACTGAGGTTGAATGctcacttttgaaaaatgacattAAAAGCTTTC
GACGACATTCCTTCTGCTCGTTTTTTATATAGGTTACCATATCTTTGTCT
TTACAGTGTGTTAAGTCATTACCTCGATAGAATAGTGTTGCCGAACTATC
TTTTTCATCACGACCAGCACGTCCAATTTCTTGAACATAGCCCTCGATAT
CTGATGGGACACCCCAATGAACGATATTACGAATATTACGAATGTTAACT
CCAACACCAAGAGCATTTGTAGCTATGACTATGCGTGTAGAGCTGTTATT
ATTTGAGAAATCATCCAATATTTCTTGCTGTATTTCATCCTCAGTACTTC
CATGATAAATTTCAACGAGCAAAGTTAAATCAAATCCACATGGAAAATGA
CCTTTTATTTTCGAATAAACATCACCACAAGCAGGATACGAATGACAATA
AATTATAGTCTTATCACATGTTTTTAGATCAGTTTTCAATTGGTCAACAA
GGTCACATAAAAGAGCTGAATCCATGACATCTTCCACAGTTTTCACTTTG
ATTATTCTCAGCTTGATATTAGGCTTTTCAGGTGTAACCTTTATTATTTT
TGGTTGTTTCAGGCG

Coding sequence (CDS) from alignment at sc0000045:262858..263572

>TCONS_00004584 ID=TCONS_00004584|Name=TCONS_00004584|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0000045:262858..263572 (Clytia hemisphaerica)
TCATAACATTGTGCTATCCAAAATCAAaccattaaattttgtgaacacAA
TGTACAATTGCTTCTCTACTGAGGTTGAATGctcacttttgaaaaatgac
attAAAAGCTTTCGACGACATTCCTTCTGCTCGTTTTTTATATAGGTTAC
CATATCTTTGTCTTTACAGTGTGTTAAGTCATTACCTCGATAGAATAGTG
TTGCCGAACTATCTTTTTCATCACGACCAGCACGTCCAATTTCTTGAACA
TAGCCCTCGATATCTGATGGGACACCCCAATGAACGATATTACGAATATT
ACGAATGTTAACTCCAACACCAAGAGCATTTGTAGCTATGACTATGCGTG
TAGAGCTGTTATTATTTGAGAAATCATCCAATATTTCTTGCTGTATTTCA
TCCTCAGTACTTCCATGATAAATTTCAACGAGCAAAGTTAAATCAAATCC
ACATGGAAAATGACCTTTTATTTTCGAATAAACATCACCACAAGCAGGAT
ACGAATGACAATAAATTATAGTCTTATCACATGTTTTTAGATCAGTTTTC
AATTGGTCAACAAGGTCACATAAAAGAGCTGAATCCATGACATCTTCCAC
AGTTTTCACTTTGATTATTCTCAGCTTGATATTAGGCTTTTCAGGTGTAA
CCTTTATTATTTTTGGTTGTTTCAGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002578XLOC_002578Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004584-exon-sc0000045-1491911889:262858..263572TCONS_00004584-exon-sc0000045-1491911889:262858..263572Clytia hemisphaericaexon
TCONS_00004584-exon-sc0000045-1510915933:262858..263572TCONS_00004584-exon-sc0000045-1510915933:262858..263572Clytia hemisphaericaexon
TCONS_00004584-exon-sc0000045-1575043694:262858..263572TCONS_00004584-exon-sc0000045-1575043694:262858..263572Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004584-proteinTCONS_00004584-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:262858..263572 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.00541269	0	3.47136	2.51047	1.02864	1.19947	1.19876	1.09177	0.670075	1.54755	1.52305	1.69199	0.00814258	0.328547	0.157903	0.0579922	0.968927	0.414936	0.357886	0.794767	0.650363	0.6797	2.07059	2.80774	0	0.615622	0.233464	0.158575
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
Blast
[Close]
BLAST of TCONS_00004584 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 5.650e-18
Identity = 64/221 (28.96%), Postives = 107/221 (48.42%), Query Frame = 1 
Query:    4 LKQPKIIKVTPEKPNIKLRIIKVKTVEDVMDSALLCDLVDQLKTDLKTCDKTIIYCHSYPACGDVYSKIK------GHFPCGFDLTLLVEIYHGSTEDEIQQEILDDFSNNNSSTRIVIATNALGVGVNIRNIRNIVHWGVPSDIEGYVQEIGRAGRDEKDSSATLFYRGNDLTHCKDKDMVTYIKNEQ-KECRRKLLMSFFKSEHSTSVEKQLYIVFTKF 645
            L+ P+I     ++PN+ L + + KT   + D   L   + +  +  +    TIIYC S      V  +++      G +  G   +   +I+H    DEIQ                VIAT A G+G+N  +IR ++H+G P D+E Y QEIGRAGRD   SS  + +   D+    ++ ++T I+NE+ +  + K++    K  HS+   +Q  I+ + F
Sbjct:  720 LRNPQITCTGFDRPNLYLEV-RRKTGNILQD---LQPFLVKTSSHWEFEGPTIIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQ---------------CVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINL--NRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQ--IILSHF 917
The following BLAST results are available for this feature:
BLAST of TCONS_00004584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN5.650e-1828.96Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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