TCONS_00004582 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004582
Unique NameTCONS_00004582
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length358

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004582 ID=TCONS_00004582|Name=TCONS_00004582|organism=Clytia hemisphaerica|type=transcript|length=358bp
CTCTACTTACATGACCGACCAATATGAACgtaaacctattgaatatctta
ACTTTTTCTCCTTATCAGTATACAAAGTTCCAAACATTAAACATGACTAC
TTTCTCTTGGAGACAATTGGATTATCTTTGTAACGCGAGGCCCGTACTGT
ACAATAAGTACTTAATTACAATAGTTAATAAACAAAGACAAATATAAATA
ATATATAAACCAGAAATGACAAATTTAGACGGTCATTCCCACCGCAGGAA
GcttaaagcttccgaggatggcactTATAttttcacgcataaggaagttg
ggtaaacatctcataattttgcgcgcgtttttcagtattttagttccggt
taAATGGT
Run BLAST on NCBI

transcript from alignment at sc0000045:145546..145903

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004582 ID=TCONS_00004582|Name=TCONS_00004582|organism=Clytia hemisphaerica|type=transcript|length=358bp|location=Sequence derived from alignment at sc0000045:145546..145903 (Clytia hemisphaerica)
ACCATTtaaccggaactaaaatactgaaaaacgcgcgcaaaattatgaga
tgtttacccaacttccttatgcgtgaaaaTATAagtgccatcctcggaag
ctttaagCTTCCTGCGGTGGGAATGACCGTCTAAATTTGTCATTTCTGGT
TTATATATTATTTATATTTGTCTTTGTTTATTAACTATTGTAATTAAGTA
CTTATTGTACAGTACGGGCCTCGCGTTACAAAGATAATCCAATTGTCTCC
AAGAGAAAGTAGTCATGTTTAATGTTTGGAACTTTGTATACTGATAAGGA
GAAAAAGTtaagatattcaataggtttacGTTCATATTGGTCGGTCATGT
AAGTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002576XLOC_002576Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004582-exon-sc0000045-1491911889:145546..145903TCONS_00004582-exon-sc0000045-1491911889:145546..145903Clytia hemisphaericaexon
TCONS_00004582-exon-sc0000045-1510915933:145546..145903TCONS_00004582-exon-sc0000045-1510915933:145546..145903Clytia hemisphaericaexon
TCONS_00004582-exon-sc0000045-1575043694:145546..145903TCONS_00004582-exon-sc0000045-1575043694:145546..145903Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:145546..145903 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.238106	0.702052	0	0.996722	0	0	1.53061	1.71953	0.401294	0	1.4474	0.158577	0.987753	2.04096	3.14413	8.72821	0.661666	0.273128	4.2265	3.61369	1.9234	2.49791	0.819021	0.346886	1.15139	1.50634	2.4323	1.44615	0.348707	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004582 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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