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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004579 ID=TCONS_00004579|Name=TCONS_00004579|organism=Clytia hemisphaerica|type=transcript|length=2069bp
ACTCGATCTAATTTAGTCTGCAAACACTCGATGACTTCAGATTTTGTTGA
AAGTTCTTGTTTGAGATTATCAACTTCTGTTTTGAGTGATAGGTTTTCGT
TTTGTAATTGAATCAAAATATCATCTTTCATTTCTTGCATTTTCTTATTA
ATGTCATACCTTACATAAACTTTAACTTAATATTGTTCTTTTATATTGTA
GCTCTCTGTACTGTATCTTGATTTATTGAGCCTTATATTGACATATTATT
TGCCTCTCAGGTTTGATTTGTACTTAAGAAATGTACCTTTATCTATTTTA
GCAAAATATATTACCGTTCGAAACCGTAAAAATCACGTCCGGCTCTCCTG
CAATAACAGGGTATGTCTTACCGTTATTTGACAAaggatcaaaacaaaag
aaaaataaaggataATGAGCCACATAAATAGAGTAGAAAAAGAGAGATTT
TTTCACCATTGCTTTCAGATAAACAGATGCCACACCCTCTCATTTCATAA
ATAGAACTTCTTCAGAACTTTTTATTCAGTTCACTTTGAGTCCTCTCTTA
CAGCAGACTTTTCCACTAAAAGAGATCAGAAGAAGATAAGAAACCACGCT
CATACAATTCATCAGAAAACCGCTTCTCCGAAGAAGAGATATTATTGAAC
TTCGCGACACCCTAAAGTAAAGAATAAAACAGCTGCGCAAAATAACACAA
TTGGAAAAGAAACGTCCCAGAAACTTCTTGAATATCAGAATTTCGTATTA
GAGAGCAAATCAAATACAGCAACTACAATCATAGTAAATCACGGTAATTC
AGTTCCCCTCATTCATTTGAACACTTGCAATGAATCTAACAAAATCATTG
TGCCTGGAATTCTGCAAAGAACTAGAAATTGTCAATTGCACAGCCGACAT
ATGCTCACAATTCGTGGTAACTGATAATACGGAACTCGACAAAACTGCAT
TCAAGCACAACGGAACTTTTACTGTAATTACTCACAGCGATTGGAAAAAG
TATGAATCCATTGTTATCATCATTGTCTCAGCGTTATCCCTATTGGCTAA
TTTCAATGTTATCTCTATGGAAACACGCAACAAATCCAACATGAAGTTTT
TCGTTAGTCTGCTGGCCATCTCAGATTCAACGTTTGCGTTTTTCCGACTT
TTAGTCGTCACGCCGTCACTAGTGTCGCATGAATGGGGCTACCATCCAAT
ATCGTGTAAACTTTTTGTGACGGTAACGGAGGGCGGaagttttatttcta
tatcTCTTGTGTTTCTTATCTCTTTACAGCGGTGTCGTGTCGTAGTTCAC
GAAACACGAACTGGACATtcaaagactttttgtatcggTTACGGCTTTCT
GATACTGATTCTCGCCGTAGGCTCCTTAGTGCCAATGATCCAAGTCTTAG
ATGTTGATCAGTTTGGAATATGCAGAGAAATCTGGCCAGGTGATTGGTCG
ATGTATTATTCATGGTACTTGCTGATTGTCGTCTGTATGCTGCCCAGCCT
TGGCCTCACTTACCTGAATATACGTATTGCGTTATTCTTGCAACGTAATA
TGACCAACGACACCATATTACAACTGCTGTCGGCACGCGAATGTAGCAAA
AGACGAAAAGACAAAAGGAAGGCTCAGTTACATCTCTTATTATTAATGGT
TTGTTTCATATGTTGTGTTTCACCAACCAAAATCTTTTGGGTTCTTCAAG
ATACAGTTGGAATCGAAAACCAAAATGTATATTTGGTTTTGAGTTTTATT
TCATCTATTTCGTACGCATTCCATACATTATCCAACCCTATCATGTACAC
TATCTCAAAAATACCATTGAAGAGTTTCTTGAAACAGAACTTGATTATTA
AACTTTTTATCAGTCGGAAATCGGACAACCAAACGTCCAGTAAAATATTG
TCGAGTAAAAATAATCTGAGCAGCTTGAAAAGTACTTCTTTGCTCAAAAA
AAGAAGATCTAATAAACACTCTATTGTTTAATCTATTTTTGAATCTATAT
ATTGAGTATGAAcaacatatttttgttgaaattgttaGTTTGGACCCTTA
GGATCAACTTAAGCCAGAG Run BLAST on NCBI protein sequence of TCONS_00004579-protein >TCONS_00004579-protein ID=TCONS_00004579-protein|Name=TCONS_00004579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MNLTKSLCLEFCKELEIVNCTADICSQFVVTDNTELDKTAFKHNGTFTVI
THSDWKKYESIVIIIVSALSLLANFNVISMETRNKSNMKFFVSLLAISDS
TFAFFRLLVVTPSLVSHEWGYHPISCKLFVTVTEGGSFISISLVFLISLQ
RCRVVVHETRTGHSKTFCIGYGFLILILAVGSLVPMIQVLDVDQFGICRE
IWPGDWSMYYSWYLLIVVCMLPSLGLTYLNIRIALFLQRNMTNDTILQLL
SARECSKRRKDKRKAQLHLLLLMVCFICCVSPTKIFWVLQDTVGIENQNV
YLVLSFISSISYAFHTLSNPIMYTISKIPLKSFLKQNLIIKLFISRKSDN
QTSSKILSSKNNLSSLKSTSLLKKRRSNKHSIV Run BLAST on NCBI transcript from alignment at sc0000045:83297..85365 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004579 ID=TCONS_00004579|Name=TCONS_00004579|organism=Clytia hemisphaerica|type=transcript|length=2069bp|location=Sequence derived from alignment at sc0000045:83297..85365 (Clytia hemisphaerica)
CTCTGGCTTAAGTTGATCCTAAGGGTCCAAACtaacaatttcaacaaaaa
tatgttgTTCATACTCAATATATAGATTCAAAAATAGATTAAACAATAGA
GTGTTTATTAGATCTTCTTTTTTTGAGCAAAGAAGTACTTTTCAAGCTGC
TCAGATTATTTTTACTCGACAATATTTTACTGGACGTTTGGTTGTCCGAT
TTCCGACTGATAAAAAGTTTAATAATCAAGTTCTGTTTCAAGAAACTCTT
CAATGGTATTTTTGAGATAGTGTACATGATAGGGTTGGATAATGTATGGA
ATGCGTACGAAATAGATGAAATAAAACTCAAAACCAAATATACATTTTGG
TTTTCGATTCCAACTGTATCTTGAAGAACCCAAAAGATTTTGGTTGGTGA
AACACAACATATGAAACAAACCATTAATAATAAGAGATGTAACTGAGCCT
TCCTTTTGTCTTTTCGTCTTTTGCTACATTCGCGTGCCGACAGCAGTTGT
AATATGGTGTCGTTGGTCATATTACGTTGCAAGAATAACGCAATACGTAT
ATTCAGGTAAGTGAGGCCAAGGCTGGGCAGCATACAGACGACAATCAGCA
AGTACCATGAATAATACATCGACCAATCACCTGGCCAGATTTCTCTGCAT
ATTCCAAACTGATCAACATCTAAGACTTGGATCATTGGCACTAAGGAGCC
TACGGCGAGAATCAGTATCAGAAAGCCGTAAccgatacaaaaagtctttg
aATGTCCAGTTCGTGTTTCGTGAACTACGACACGACACCGCTGTAAAGAG
ATAAGAAACACAAGAgatatagaaataaaacttCCGCCCTCCGTTACCGT
CACAAAAAGTTTACACGATATTGGATGGTAGCCCCATTCATGCGACACTA
GTGACGGCGTGACGACTAAAAGTCGGAAAAACGCAAACGTTGAATCTGAG
ATGGCCAGCAGACTAACGAAAAACTTCATGTTGGATTTGTTGCGTGTTTC
CATAGAGATAACATTGAAATTAGCCAATAGGGATAACGCTGAGACAATGA
TGATAACAATGGATTCATACTTTTTCCAATCGCTGTGAGTAATTACAGTA
AAAGTTCCGTTGTGCTTGAATGCAGTTTTGTCGAGTTCCGTATTATCAGT
TACCACGAATTGTGAGCATATGTCGGCTGTGCAATTGACAATTTCTAGTT
CTTTGCAGAATTCCAGGCACAATGATTTTGTTAGATTCATTGCAAGTGTT
CAAATGAATGAGGGGAACTGAATTACCGTGATTTACTATGATTGTAGTTG
CTGTATTTGATTTGCTCTCTAATACGAAATTCTGATATTCAAGAAGTTTC
TGGGACGTTTCTTTTCCAATTGTGTTATTTTGCGCAGCTGTTTTATTCTT
TACTTTAGGGTGTCGCGAAGTTCAATAATATCTCTTCTTCGGAGAAGCGG
TTTTCTGATGAATTGTATGAGCGTGGTTTCTTATCTTCTTCTGATCTCTT
TTAGTGGAAAAGTCTGCTGTAAGAGAGGACTCAAAGTGAACTGAATAAAA
AGTTCTGAAGAAGTTCTATTTATGAAATGAGAGGGTGTGGCATCTGTTTA
TCTGAAAGCAATGGTGAAAAAATCTCTCTTTTTCTACTCTATTTATGTGG
CTCATtatcctttatttttcttttgttttgatcctTTGTCAAATAACGGT
AAGACATACCCTGTTATTGCAGGAGAGCCGGACGTGATTTTTACGGTTTC
GAACGGTAATATATTTTGCTAAAATAGATAAAGGTACATTTCTTAAGTAC
AAATCAAACCTGAGAGGCAAATAATATGTCAATATAAGGCTCAATAAATC
AAGATACAGTACAGAGAGCTACAATATAAAAGAACAATATTAAGTTAAAG
TTTATGTAAGGTATGACATTAATAAGAAAATGCAAGAAATGAAAGATGAT
ATTTTGATTCAATTACAAAACGAAAACCTATCACTCAAAACAGAAGTTGA
TAATCTCAAACAAGAACTTTCAACAAAATCTGAAGTCATCGAGTGTTTGC
AGACTAAATTAGATCGAGT Coding sequence (CDS) from alignment at sc0000045:83297..85365 >TCONS_00004579 ID=TCONS_00004579|Name=TCONS_00004579|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at sc0000045:83297..85365 (Clytia hemisphaerica)
TTAAACAATAGAGTGTTTATTAGATCTTCTTTTTTTGAGCAAAGAAGTAC
TTTTCAAGCTGCTCAGATTATTTTTACTCGACAATATTTTACTGGACGTT
TGGTTGTCCGATTTCCGACTGATAAAAAGTTTAATAATCAAGTTCTGTTT
CAAGAAACTCTTCAATGGTATTTTTGAGATAGTGTACATGATAGGGTTGG
ATAATGTATGGAATGCGTACGAAATAGATGAAATAAAACTCAAAACCAAA
TATACATTTTGGTTTTCGATTCCAACTGTATCTTGAAGAACCCAAAAGAT
TTTGGTTGGTGAAACACAACATATGAAACAAACCATTAATAATAAGAGAT
GTAACTGAGCCTTCCTTTTGTCTTTTCGTCTTTTGCTACATTCGCGTGCC
GACAGCAGTTGTAATATGGTGTCGTTGGTCATATTACGTTGCAAGAATAA
CGCAATACGTATATTCAGGTAAGTGAGGCCAAGGCTGGGCAGCATACAGA
CGACAATCAGCAAGTACCATGAATAATACATCGACCAATCACCTGGCCAG
ATTTCTCTGCATATTCCAAACTGATCAACATCTAAGACTTGGATCATTGG
CACTAAGGAGCCTACGGCGAGAATCAGTATCAGAAAGCCGTAAccgatac
aaaaagtctttgaATGTCCAGTTCGTGTTTCGTGAACTACGACACGACAC
CGCTGTAAAGAGATAAGAAACACAAGAgatatagaaataaaacttCCGCC
CTCCGTTACCGTCACAAAAAGTTTACACGATATTGGATGGTAGCCCCATT
CATGCGACACTAGTGACGGCGTGACGACTAAAAGTCGGAAAAACGCAAAC
GTTGAATCTGAGATGGCCAGCAGACTAACGAAAAACTTCATGTTGGATTT
GTTGCGTGTTTCCATAGAGATAACATTGAAATTAGCCAATAGGGATAACG
CTGAGACAATGATGATAACAATGGATTCATACTTTTTCCAATCGCTGTGA
GTAATTACAGTAAAAGTTCCGTTGTGCTTGAATGCAGTTTTGTCGAGTTC
CGTATTATCAGTTACCACGAATTGTGAGCATATGTCGGCTGTGCAATTGA
CAATTTCTAGTTCTTTGCAGAATTCCAGGCACAATGATTTTGTTAGATTC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004579-exon-sc0000045-1491911889:83297..85365 | TCONS_00004579-exon-sc0000045-1491911889:83297..85365 | Clytia hemisphaerica | exon |
| TCONS_00004579-exon-sc0000045-1510915933:83297..85365 | TCONS_00004579-exon-sc0000045-1510915933:83297..85365 | Clytia hemisphaerica | exon |
| TCONS_00004579-exon-sc0000045-1575043694:83297..85365 | TCONS_00004579-exon-sc0000045-1575043694:83297..85365 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:83297..85365 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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