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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004578 ID=TCONS_00004578|Name=TCONS_00004578|organism=Clytia hemisphaerica|type=transcript|length=1075bp
TAACTACCCATAGTAACCGTTTGTTTTTGAAGTTAGAAAACAAACGAATT
TATAAATTGAACagattcaaaaagttttcaacaaGGCGGAATCAGTCaga
cgaaaaagaaaatttgaatttggtCACTGCTCACAAACTCGCGAAACAAA
GTCAAAAAGGGATTCTTAAAAAGCTATAATAAACGTTCAGAACTATACTT
AGAAAACTAAACACTTCGAGAGCAGATACATTGCTGAGACaaggaaaatc
acaaaattcaaCAACAATGCTTGGTCCATCGTATCTTTCGCACCAAGAAA
TGATTTATGAACCATCACCACGCGACGGCATCTCATACATCAACCGTTTA
CGTCAACCAACACATTTCACATATCTGCCAAAAGATAAATTTCATGATGT
CTCTGCTAAACCAAGGCTTTTTGAACGTCCAAATGATGACCATTTAGGAC
CACTGGCGTTTAAGAAAAACAACTCAGAAGGCGTAACAACTAAACCAACC
TTAAGGTACAGTATGCTGGCTTCAGAATGGCGCGATACGATGCAGCTACG
AGATAAACAAGACTGGCTGGACAGTCGATATAACCCAGACCACTGGTTTA
TGTTCGAAAACTACGACCCCCGTCATCCGTCTTATTACGATAGAGATCAC
CTGAGAGATGGATACGTTTCTTACTACTCACCGCGCGGCTCCAGCATTAG
CAGCCGTAGCCGAATCAGTAGTAATGACTCTGTGGCAAGCGCACCTCATT
TTATCACACCTAAATTGACAAGCCGCACGGACATGCTCAGACGATCAGTC
ACAAGCGCGCGATCGATCGGTCAACGCTACAATCACACTCCAAGATGGTC
AAATCATTATTATGGCGCAAGTACGGGACGATTCTGATAAAATGTCTTAT
GTAATAAATGAGTATTTTAatagtgttttttgtttgtttaattCAAACTT
TGTAATTtcgtttattttagtttttaagaaaatattgtAATTTAATTTTC
CTGTACAACATATTattttaaagagaaaaaaatgataaaaaatgagcACT
CTCACTCTCATGCTTCATTTCCTCT Run BLAST on NCBI protein sequence of TCONS_00004578-protein >TCONS_00004578-protein ID=TCONS_00004578-protein|Name=TCONS_00004578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MLGPSYLSHQEMIYEPSPRDGISYINRLRQPTHFTYLPKDKFHDVSAKPR
LFERPNDDHLGPLAFKKNNSEGVTTKPTLRYSMLASEWRDTMQLRDKQDW
LDSRYNPDHWFMFENYDPRHPSYYDRDHLRDGYVSYYSPRGSSISSRSRI
SSNDSVASAPHFITPKLTSRTDMLRRSVTSARSIGQRYNHTPRWSNHYYG
ASTGRF Run BLAST on NCBI transcript from alignment at sc0000045:77904..78978 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004578 ID=TCONS_00004578|Name=TCONS_00004578|organism=Clytia hemisphaerica|type=transcript|length=1075bp|location=Sequence derived from alignment at sc0000045:77904..78978 (Clytia hemisphaerica)
AGAGGAAATGAAGCATGAGAGTGAGAGTgctcattttttatcattttttt
ctctttaaaatAATATGTTGTACAGGAAAATTAAATTacaatattttctt
aaaaactaaaataaacgaAATTACAAAGTTTGaattaaacaaacaaaaaa
cactatTAAAATACTCATTTATTACATAAGACATTTTATCAGAATCGTCC
CGTACTTGCGCCATAATAATGATTTGACCATCTTGGAGTGTGATTGTAGC
GTTGACCGATCGATCGCGCGCTTGTGACTGATCGTCTGAGCATGTCCGTG
CGGCTTGTCAATTTAGGTGTGATAAAATGAGGTGCGCTTGCCACAGAGTC
ATTACTACTGATTCGGCTACGGCTGCTAATGCTGGAGCCGCGCGGTGAGT
AGTAAGAAACGTATCCATCTCTCAGGTGATCTCTATCGTAATAAGACGGA
TGACGGGGGTCGTAGTTTTCGAACATAAACCAGTGGTCTGGGTTATATCG
ACTGTCCAGCCAGTCTTGTTTATCTCGTAGCTGCATCGTATCGCGCCATT
CTGAAGCCAGCATACTGTACCTTAAGGTTGGTTTAGTTGTTACGCCTTCT
GAGTTGTTTTTCTTAAACGCCAGTGGTCCTAAATGGTCATCATTTGGACG
TTCAAAAAGCCTTGGTTTAGCAGAGACATCATGAAATTTATCTTTTGGCA
GATATGTGAAATGTGTTGGTTGACGTAAACGGTTGATGTATGAGATGCCG
TCGCGTGGTGATGGTTCATAAATCATTTCTTGGTGCGAAAGATACGATGG
ACCAAGCATTGTTGttgaattttgtgattttccttGTCTCAGCAATGTAT
CTGCTCTCGAAGTGTTTAGTTTTCTAAGTATAGTTCTGAACGTTTATTAT
AGCTTTTTAAGAATCCCTTTTTGACTTTGTTTCGCGAGTTTGTGAGCAGT
GaccaaattcaaattttctttttcgtctGACTGATTCCGCCttgttgaaa
actttttgaatctGTTCAATTTATAAATTCGTTTGTTTTCTAACTTCAAA
AACAAACGGTTACTATGGGTAGTTA Coding sequence (CDS) from alignment at sc0000045:77904..78978 >TCONS_00004578 ID=TCONS_00004578|Name=TCONS_00004578|organism=Clytia hemisphaerica|type=CDS|length=621bp|location=Sequence derived from alignment at sc0000045:77904..78978 (Clytia hemisphaerica)
TCAGAATCGTCCCGTACTTGCGCCATAATAATGATTTGACCATCTTGGAG
TGTGATTGTAGCGTTGACCGATCGATCGCGCGCTTGTGACTGATCGTCTG
AGCATGTCCGTGCGGCTTGTCAATTTAGGTGTGATAAAATGAGGTGCGCT
TGCCACAGAGTCATTACTACTGATTCGGCTACGGCTGCTAATGCTGGAGC
CGCGCGGTGAGTAGTAAGAAACGTATCCATCTCTCAGGTGATCTCTATCG
TAATAAGACGGATGACGGGGGTCGTAGTTTTCGAACATAAACCAGTGGTC
TGGGTTATATCGACTGTCCAGCCAGTCTTGTTTATCTCGTAGCTGCATCG
TATCGCGCCATTCTGAAGCCAGCATACTGTACCTTAAGGTTGGTTTAGTT
GTTACGCCTTCTGAGTTGTTTTTCTTAAACGCCAGTGGTCCTAAATGGTC
ATCATTTGGACGTTCAAAAAGCCTTGGTTTAGCAGAGACATCATGAAATT
TATCTTTTGGCAGATATGTGAAATGTGTTGGTTGACGTAAACGGTTGATG
TATGAGATGCCGTCGCGTGGTGATGGTTCATAAATCATTTCTTGGTGCGA
AAGATACGATGGACCAAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004578-exon-sc0000045-1491911889:77904..78978 | TCONS_00004578-exon-sc0000045-1491911889:77904..78978 | Clytia hemisphaerica | exon |
| TCONS_00004578-exon-sc0000045-1510915933:77904..78978 | TCONS_00004578-exon-sc0000045-1510915933:77904..78978 | Clytia hemisphaerica | exon |
| TCONS_00004578-exon-sc0000045-1575043694:77904..78978 | TCONS_00004578-exon-sc0000045-1575043694:77904..78978 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:77904..78978 . |
Blast
The following BLAST results are available for this feature:
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