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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004574 ID=TCONS_00004574|Name=TCONS_00004574|organism=Clytia hemisphaerica|type=transcript|length=1372bp
GGAGACGCTTAACACCACACCTGCATATTTGAACTATTTTTGCACCTTGT
GGCTCCACACCtcagttttgaaattaaaaaacaaatatcaCAGCTAGTCT
GGATactaaattgaatttttcttttgttggaGCCAATCAGAAACCAGAAT
GAGATTATATGGACAATACTAACAATAGCTTTAAACCAAAGCCTTTTGTT
TTTTACCACAGAGGTTTGGAAAGGAACTTGCTCACGTATTTAAAcagaaa
atgacatttttgttcGAACACTTCTCATCATCATTGCATACGATACGATA
CGATACGTACACTTTTCATTCTTCTCCACTGTCGattcttcatttaattt
aatTGCTTCATCATGGAAATCGATATGGGCGAACACGCATCTATTCTTTA
CGGAACTCATTACCCGAACAAAATCTTTGTCGGATGCCTTCCCGCAAGAa
TAACAGCTGCTTCTCTCGGCGAATATTTTGGCTGTTTTGGCGAGGTAATC
GAGGCGAAGGTCGTATTAGACGATGCCAAGAAATCGAAACGTTTTGGGTT
CGTGTCTTTCTCCCGTGCTACCGATGCCAAAACTGTTTTATCGGCTGGAG
ATTTTTACATGCTGGGAAAACGCATCGTTGTTGGACCTGCTGTAAAAAGA
GAGTTCAAGGAGCGTGTAGCAGACGAGAGTGTAAAGATCGTGATGGCACA
GGAAGCGGTCATCGAACACGAAATGAGAAGGAGCAATGAACACCGACAAA
GCAACGACGTTTATAATCCACCAAGGCGTTTTGTTTACCGCCCGTTGAAA
CAAGAAAAAGATGATGATAACATGGAGACCAAAACCTTGACAGACTACCA
GCAAGATGACGTGAAACCACCTTGCAATGATGCTATTGCTCTTCCAACCC
CGCCTCAACAAACATCTCAACGCCCTCTCCCATCGAATAATGGTGCATTT
TACTATCCACAGCAGCCATGGCATCAACCACTATTGTTTTTCGATCCAAA
TTCCGGATTTTTCTATCattaaagttgtttttttatattttttgtaattt
tttttgtttttttacaagGTTTGATGTAGTAGGTGTATTTAAAACTTGTA
TGCGTTTTTAAGTATGTTTGTATGTATATTTTAGGAGTATTTTTATTGTC
CTATAGTTCTATATTGTCCTGTAAATTGTTTAGTCTTACCACGCCCGTTT
ATTTAGATTTACTGACTTTGTAGGAATATTTTTATTGATTGATgcaacat
acacgttttttataagaacaaatcaaacaaacacAAGACTTcaatggtca
aaatattttaatctaagttaagaacatattttaaggcttcacagaaaatt
gaataaaaatactcaaaaaata Run BLAST on NCBI protein sequence of TCONS_00004574-protein >TCONS_00004574-protein ID=TCONS_00004574-protein|Name=TCONS_00004574-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MEIDMGEHASILYGTHYPNKIFVGCLPARITAASLGEYFGCFGEVIEAKV
VLDDAKKSKRFGFVSFSRATDAKTVLSAGDFYMLGKRIVVGPAVKREFKE
RVADESVKIVMAQEAVIEHEMRRSNEHRQSNDVYNPPRRFVYRPLKQEKD
DDNMETKTLTDYQQDDVKPPCNDAIALPTPPQQTSQRPLPSNNGAFYYPQ
QPWHQPLLFFDPNSGFFYH Run BLAST on NCBI transcript from alignment at sc0000045:769567..771702- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004574 ID=TCONS_00004574|Name=TCONS_00004574|organism=Clytia hemisphaerica|type=transcript|length=2136bp|location=Sequence derived from alignment at sc0000045:769567..771702- (Clytia hemisphaerica)
GGAGACGCTTAACACCACACCTGCATATTTGAACTATTTTTGCACCTTGT
GGCTCCACACCTCAGTTTTGAAATTAAAAAACAAATATCACAGCTAGTCT
GGATACTAAATTGAATTTTTCTTTTGTTGGAGCCAATCAGAAACCAGAAT
GAGATTATATGGACAATACTAACAATAGCTTTAAACCAAAGCCTTTTGTT
TTTTACCACAGAGGTTTGGAAAGGAACTTGCTCACGTATTTAAACAGAAA
ATGACATTTTTGTTCGAACACTTCTCATCATCATTGCATACGATACGATA
CGATACGTACACTTTTCATTCTTCTCCACTGTCGATTCTTCATTTAATTT
AATTGCTTCATCATGGAAATCGATATGGTACGTAAATTACTTTTATTAGA
AATTCGACATTCGTTTTTGTGGGATTTTTTGGGTCTTTTAAAAGTCCTTC
GAGGCGCTTCTTATTCTACAGGGATTCTACACTCTTCTGCGTTGGTTGCA
TCGAAATTTTAATGTGTGAAATTAGAGATTTTATTTGTTTTTATCTTTTA
TAGGGCGAACACGCATCTATTCTTTACGGAACTCATTACCCGAACAAAAT
CTTTGTCGGATGCCTTCCCGCAAGAGTAAGTCAAATAATGCATTTTTTTT
CAATTATCCTTTTCGGGGGAAGATAGTCGGGCCGCACAGGATTCGGAGAA
AAGTGATGAAAGTAATAAAATAAACCAAGCCTTATCATTTTTTTCTTCCT
TTCACATTCAGCACCAGACTACCTTATCATACTGAAGCTTTTTTTATGAA
AGTAAAATTTTTGAGATACCATTGTTTATTAGGAAAGGATAAATTTAATT
TTGTGTAGCAAAACACTGTTTTTGAGCCTATCTAGATGGGTTTGTTTTGA
AGGCTTCGAAAGTGTTTCAATTAGTGATGTTTGTAAACTTTTTATTTATT
CTTTAGATAACAGCTGCTTCTCTCGGCGAATATTTTGGCTGTTTTGGCGA
GGTAATCGAGGCGAAGGTCGTATTAGACGATGCCAAGAAATCGAAACGTT
TTGGGTTCGTGTCTTTCTCCCGTGCTACCGATGCCAAAACTGTTTTATCG
GCTGGAGATTTTTACATGCTGGGAAAACGCATCGTTGTTGGACCTGCTGT
AAAAAGAGAGGTTGCTATGATTTTTGCTTCGTTGATCTTTCAAATACACT
TGAAAAGTCATAAGGGGTAAATTACTCTGTTAAAGGCCCTTTACGCTATG
TTATGTCAACTAGTATAGTTCTCCTCCATGTTTGCCCTTTGCATCTGAGT
TTGGCTGTAACCAAAACTTCAACATCAACCGATTTTTTTATAAGAGTATC
TAAAATTTCTATGACTATAATAATGATGATGACTATAATTTAAAACTTTT
TCTTTTATGTTATTCAGTTCAAGGAGCGTGTAGCAGACGAGAGTGTAAAG
ATCGTGATGGCACAGGAAGCGGTCATCGAACACGAAATGAGAAGGAGCAA
TGAACACCGACAAAGCAACGACGTTTATAATCCACCAAGGCGTTTTGTTT
ACCGCCCGTTGAAACAAGAAAAAGATGATGATAACATGGAGACCAAAACC
TTGACAGACTACCAGCAAGATGACGTGAAACCACCTTGCAATGATGCTAT
TGCTCTTCCAACCCCGCCTCAACAAACATCTCAACGCCCTCTCCCATCGA
ATAATGGTGCATTTTACTATCCACAGCAGCCATGGCATCAACCACTATTG
TTTTTCGATCCAAATTCCGGATTTTTCTATCATTAAAGTTGTTTTTTTAT
ATTTTTTGTAATTTTTTTTGTTTTTTTACAAGGTTTGATGTAGTAGGTGT
ATTTAAAACTTGTATGCGTTTTTAAGTATGTTTGTATGTATATTTTAGGA
GTATTTTTATTGTCCTATAGTTCTATATTGTCCTGTAAATTGTTTAGTCT
TACCACGCCCGTTTATTTAGATTTACTGACTTTGTAGGAATATTTTTATT
GATTGATGCAACATACACGTTTTTTATAAGAACAAATCAAACAAACACAA
GACTTCAATGGTCAAAATATTTTAATCTAAGTTAAGAACATATTTTAAGG
CTTCACAGAAAATTGAATAAAAATACTCAAAAAATA Coding sequence (CDS) from alignment at sc0000045:769567..771702- >TCONS_00004574 ID=TCONS_00004574|Name=TCONS_00004574|organism=Clytia hemisphaerica|type=CDS|length=2640bp|location=Sequence derived from alignment at sc0000045:769567..771702- (Clytia hemisphaerica)
TTCAAGGAGCGTGTAGCAGACGAGAGTGTAAAGATCGTGATGGCACAGGA
AGCGGTCATCGAACACGAAATGAGAAGGAGCAATGAACACCGACAAAGCA
ACGACGTTTATAATCCACCAAGGCGTTTTGTTTACCGCCCGTTGAAACAA
GAAAAAGATGATGATAACATGGAGACCAAAACCTTGACAGACTACCAGCA
AGATGACGTGAAACCACCTTGCAATGATGCTATTGCTCTTCCAACCCCGC
CTCAACAAACATCTCAACGCCCTCTCCCATCGAATAATGGTGCATTTTAC
TATCCACAGCAGCCATGGCATCAACCACTATTGTTTTTCGATCCAAATTC
CGGATTTTTCTATCATTAAATAACAGCTGCTTCTCTCGGCGAATATTTTG
GCTGTTTTGGCGAGGTAATCGAGGCGAAGGTCGTATTAGACGATGCCAAG
AAATCGAAACGTTTTGGGTTCGTGTCTTTCTCCCGTGCTACCGATGCCAA
AACTGTTTTATCGGCTGGAGATTTTTACATGCTGGGAAAACGCATCGTTG
TTGGACCTGCTGTAAAAAGAGAGGGCGAACACGCATCTATTCTTTACGGA
ACTCATTACCCGAACAAAATCTTTGTCGGATGCCTTCCCGCAAGAATGGA
AATCGATATGTTCAAGGAGCGTGTAGCAGACGAGAGTGTAAAGATCGTGA
TGGCACAGGAAGCGGTCATCGAACACGAAATGAGAAGGAGCAATGAACAC
CGACAAAGCAACGACGTTTATAATCCACCAAGGCGTTTTGTTTACCGCCC
GTTGAAACAAGAAAAAGATGATGATAACATGGAGACCAAAACCTTGACAG
ACTACCAGCAAGATGACGTGAAACCACCTTGCAATGATGCTATTGCTCTT
CCAACCCCGCCTCAACAAACATCTCAACGCCCTCTCCCATCGAATAATGG
TGCATTTTACTATCCACAGCAGCCATGGCATCAACCACTATTGTTTTTCG
ATCCAAATTCCGGATTTTTCTATCATTAAATAACAGCTGCTTCTCTCGGC
GAATATTTTGGCTGTTTTGGCGAGGTAATCGAGGCGAAGGTCGTATTAGA
CGATGCCAAGAAATCGAAACGTTTTGGGTTCGTGTCTTTCTCCCGTGCTA
CCGATGCCAAAACTGTTTTATCGGCTGGAGATTTTTACATGCTGGGAAAA
CGCATCGTTGTTGGACCTGCTGTAAAAAGAGAGGGCGAACACGCATCTAT
TCTTTACGGAACTCATTACCCGAACAAAATCTTTGTCGGATGCCTTCCCG
CAAGAATGGAAATCGATATGTTCAAGGAGCGTGTAGCAGACGAGAGTGTA
AAGATCGTGATGGCACAGGAAGCGGTCATCGAACACGAAATGAGAAGGAG
CAATGAACACCGACAAAGCAACGACGTTTATAATCCACCAAGGCGTTTTG
TTTACCGCCCGTTGAAACAAGAAAAAGATGATGATAACATGGAGACCAAA
ACCTTGACAGACTACCAGCAAGATGACGTGAAACCACCTTGCAATGATGC
TATTGCTCTTCCAACCCCGCCTCAACAAACATCTCAACGCCCTCTCCCAT
CGAATAATGGTGCATTTTACTATCCACAGCAGCCATGGCATCAACCACTA
TTGTTTTTCGATCCAAATTCCGGATTTTTCTATCATTAAATAACAGCTGC
TTCTCTCGGCGAATATTTTGGCTGTTTTGGCGAGGTAATCGAGGCGAAGG
TCGTATTAGACGATGCCAAGAAATCGAAACGTTTTGGGTTCGTGTCTTTC
TCCCGTGCTACCGATGCCAAAACTGTTTTATCGGCTGGAGATTTTTACAT
GCTGGGAAAACGCATCGTTGTTGGACCTGCTGTAAAAAGAGAGGGCGAAC
ACGCATCTATTCTTTACGGAACTCATTACCCGAACAAAATCTTTGTCGGA
TGCCTTCCCGCAAGAATGGAAATCGATATGTTCAAGGAGCGTGTAGCAGA
CGAGAGTGTAAAGATCGTGATGGCACAGGAAGCGGTCATCGAACACGAAA
TGAGAAGGAGCAATGAACACCGACAAAGCAACGACGTTTATAATCCACCA
AGGCGTTTTGTTTACCGCCCGTTGAAACAAGAAAAAGATGATGATAACAT
GGAGACCAAAACCTTGACAGACTACCAGCAAGATGACGTGAAACCACCTT
GCAATGATGCTATTGCTCTTCCAACCCCGCCTCAACAAACATCTCAACGC
CCTCTCCCATCGAATAATGGTGCATTTTACTATCCACAGCAGCCATGGCA
TCAACCACTATTGTTTTTCGATCCAAATTCCGGATTTTTCTATCATTAAA
TAACAGCTGCTTCTCTCGGCGAATATTTTGGCTGTTTTGGCGAGGTAATC
GAGGCGAAGGTCGTATTAGACGATGCCAAGAAATCGAAACGTTTTGGGTT
CGTGTCTTTCTCCCGTGCTACCGATGCCAAAACTGTTTTATCGGCTGGAG
ATTTTTACATGCTGGGAAAACGCATCGTTGTTGGACCTGCTGTAAAAAGA
GAGGGCGAACACGCATCTATTCTTTACGGAACTCATTACCCGAACAAAAT
CTTTGTCGGATGCCTTCCCGCAAGAATGGAAATCGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004574-exon-sc0000045-1575043694:771326..771702 | TCONS_00004574-exon-sc0000045-1575043694:771326..771702 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1575043694:771078..771149 | TCONS_00004574-exon-sc0000045-1575043694:771078..771149 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1575043694:770543..770746 | TCONS_00004574-exon-sc0000045-1575043694:770543..770746 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1575043694:769567..770285 | TCONS_00004574-exon-sc0000045-1575043694:769567..770285 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1510915933:771326..771702 | TCONS_00004574-exon-sc0000045-1510915933:771326..771702 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1510915933:771078..771149 | TCONS_00004574-exon-sc0000045-1510915933:771078..771149 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1510915933:770543..770746 | TCONS_00004574-exon-sc0000045-1510915933:770543..770746 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1510915933:769567..770285 | TCONS_00004574-exon-sc0000045-1510915933:769567..770285 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1491911889:771326..771702 | TCONS_00004574-exon-sc0000045-1491911889:771326..771702 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1491911889:771078..771149 | TCONS_00004574-exon-sc0000045-1491911889:771078..771149 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1491911889:770543..770746 | TCONS_00004574-exon-sc0000045-1491911889:770543..770746 | Clytia hemisphaerica | exon |
| TCONS_00004574-exon-sc0000045-1491911889:769567..770285 | TCONS_00004574-exon-sc0000045-1491911889:769567..770285 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:769567..771702 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000504 | RRM_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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