|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004568 ID=TCONS_00004568|Name=TCONS_00004568|organism=Clytia hemisphaerica|type=transcript|length=2387bpRun BLAST on NCBI protein sequence of TCONS_00004568-protein >TCONS_00004568-protein ID=TCONS_00004568-protein|Name=TCONS_00004568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=586bp VYYIAKSEGYYSVVAVLKISLFLKVPGTYTSHYDGLQSVDGASPQIPPPERun BLAST on NCBI transcript from alignment at sc0000045:648923..680773- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004568 ID=TCONS_00004568|Name=TCONS_00004568|organism=Clytia hemisphaerica|type=transcript|length=31851bp|location=Sequence derived from alignment at sc0000045:648923..680773- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000045:648923..680773- >TCONS_00004568 ID=TCONS_00004568|Name=TCONS_00004568|organism=Clytia hemisphaerica|type=CDS|length=17610bp|location=Sequence derived from alignment at sc0000045:648923..680773- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004568 vs. Swiss-Prot (Human)
Match: MEIS1 (Homeobox protein Meis1 OS=Homo sapiens GN=MEIS1 PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.668e-44 Identity = 79/135 (58.52%), Postives = 102/135 (75.56%), Query Frame = 1
Query: 235 LKKDKDELYNHPLFPLLVCIFEKCELATN--RNPNTDKGLKPTELYTSASFGKDIDQYVKQLKSNKNIFTANTEMDNLLIQSIQVLRFHLLELEKVHELCDNFCKRYIDCLKGKMPLDVVLED------TDKKDI 615
LK+DKD +Y HPLFPLL IFEKCELAT R P G+ ++ +S SF +DI + KQ+++ K +F++N E+DNL+IQ+IQVLRFHLLELEKVHELCDNFC RYI CLKGKMP+D+V++D +D +DI
Sbjct: 71 LKRDKDAIYGHPLFPLLALIFEKCELATCTPREP----GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDI 201 HSP 2 Score: 133.265 bits (334), Expect = 3.463e-33 Identity = 59/66 (89.39%), Postives = 63/66 (95.45%), Query Frame = 1
Query: 1030 RGIFPKMATNIMKAWLFQHLNHPYPSEEQKRQLANETGLTILQVNNWFINARRRIVQPMIDASNRA 1227
RGIFPK+ATNIM+AWLFQHL HPYPSEEQK+QLA +TGLTILQVNNWFINARRRIVQPMID SNRA
Sbjct: 276 RGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRA 341 The following BLAST results are available for this feature:
BLAST of TCONS_00004568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.