TCONS_00004561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004561
Unique NameTCONS_00004561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1841

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004561 ID=TCONS_00004561|Name=TCONS_00004561|organism=Clytia hemisphaerica|type=transcript|length=1841bp
tttacattttttgttttatccttTGGGCATCAGGATATTGGTTAAATGGT
TTCATTGGGTTTTTAGGGAAGTAATTTGATTAATATAGCGTTTGGTGATC
TTGAATATTTATAAGGAGGAgcaaaagagatttttgtttcattcaaTTGA
AAGGGTTTGTTCGTGTTTTCCCACTCACaataaaagaCGCAGAACCCATC
GTGGTCGTTCGACATTTCACCTCACGCTTCGAAACCGCCTCACCTTTCAC
ACTCGTCCGCGCTTCCAATGACACACGCAGACCCTttgaacaacaacaac
aacaacaacaacaacaacaacaacaacaacaacatcaatAATAACCATCA
CCATCATCAACTCGATTCAGTGCCAGGTGAAACAGATTTGAACAGTGCTG
TATCATCAGAAACGATGCCAGATTCCGAAGATTCCATTTTCAAAGATGAC
GAAGATGAGaaagacaaaagaaaacaaaagaaacgagggatttttcccaa
aatggcCACCAATATCATGAAAGCTTGGTTATTTCAACATTTAAATcaTC
CATACCCCTCAGAAGAACAAAAACGTCAACTGGCAAATGAAACTGGTCTT
ACCATACTTCAAGTTAATAATTGGTTTATCAATGCAAGGCGGCGTATCGT
CCAACCCATGATCGATGCATCAAACCGGGCAGGTAAATCACCGGTTGTCA
CAGTATATAAATCACGTAAACGTAAAAATTCGGGATCGGACAGTATTTCA
CCAGGACCTTTTCCCTATCCACCAATGGGTGGCCATTATTCGGCGCCATA
TTTAAACGAACATTACTCTGGGATGTATTCACAATACCATAATGACATCA
CAGGAGCTTCAACGACTACACCGCATGCGCACTACAGTCCAAGGTCGTAC
GGGTGTGGCGCATCTGATCAACATTCGATGGGTGTCTCTCTACCTCCACA
AACCAGCTGTGCTCCTATGAGACAGCATTCTTCATCTTCTTATGGAACTT
ATAGGACCTCCCCGGTCCCTCCTACTCCACAGTCTCCCTTCTTAGGGCAC
ACACATCCTTCAATGATGCCACCGTCTACGAATACGCCCAACCTTCATGG
TTACCACCAGACACACCCAGCATCTTATCCGCCCCCTCCGCCTCACCAAT
ACACGCCCCACGAAGAACTCACGCCCCATACCGTTCATAGTGTTATGAAT
ATGCATAATATATAACACTTGCCTCCCTTCTTTCTCCCTTATTACGATAT
AAATAGTTTTcaccattaattttttctgtgtGTTGTTTTTTATactattt
tttaagaaattttatgTTGCTGTTATATTAAATAAATCATAGTTCATTCT
CCTTAGGGCCATGTAATGGTCTggagaattttttaaaagaaattttaacc
attttgttagataaaaaaaagttaaaagcggTCGTTAATATATGTTTTct
ataatatttttaacctaacTTCGGAGAATCGGTGATGAATATCCTTAAAT
AACATATTTTCACATTTTAGGAAGCTATTTCTAATGGATTCCTTTTGAAA
ATGCAATCGTTTGatgtattttgagttttttaaattctaatttttcttaa
aattccaGTTGCTTTTCTGTCTTAActttaaattaattaaaaagtgctta
atatttattttatattatttcgcttgattttttaaagaaaatactttttt
ctgcttttagaaatttttgacCGTTTAATAATGGGCTGTAAATAATGATG
TAGCTTTGtcctttttgtaattttaccaTATTTTAATTAAAAGCAAGAAC
TTTAGTTCTTACCTTATTATatgagaaaatttgaaatagaa
Run BLAST on NCBI

transcript from alignment at sc0000045:648923..654804-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004561 ID=TCONS_00004561|Name=TCONS_00004561|organism=Clytia hemisphaerica|type=transcript|length=5882bp|location=Sequence derived from alignment at sc0000045:648923..654804- (Clytia hemisphaerica)
TTTACATTTTTTGTTTTATCCTTTGGGCATCAGGATATTGGTTAAATGGT
TTCATTGGGTTTTTAGGGAAGTAATTTGATTAATATAGCGTTTGGTGATC
TTGAATATTTATAAGGAGGAGCAAAAGAGATTTTTGTTTCATTCAATTGA
AAGGGTTTGTTCGTGTTTTCCCACTCACAATAAAAGGTAAAAAATTTCTT
GACAGGTCCCATCAAACATAAGATCCCTTGGTATTATTTCAAATGACAGA
ATTATGACAAAGTGGTTTTTGAACTTGATGGTTTAGACTGAAAGTGCCTA
GAAGCTGTTTTAACCATTGATTGGACTTATTTTTCTTAGAATTTAATGTT
TCAGATTTAATTTCATAATCTTTTGGAATTTTTCCTGGTTCCATTTTTTC
TTGGCAAGGTTGAATTTTTTGAGAACTCTTCCTGAAGTATATAACAATAT
AATTAGGTACAATAGGCACAGAAGAAGGTTGAAATGAACTTGTCTCAATG
TAATTTAGGTATAAACCATCCCTGTATTTCGCTTAGTTCGCCAGCTCTCA
TTAAGAAGACCGGTTGAAGTACAGTACCACTAGTTGCAATTAAATCAACC
GAAGTCGTTAGAAATCAAAAGTTCAATCACAACGACCCTACCATTGGTGG
ATATACTTAAAGAGCGTGTAAATATTGAATTACTTTTATTTTATTCAGAC
GCAGAACCCATCGTGGTCGTTCGACATTTCACCTCACGCTTCGAAACCGC
CTCACCTTTCACACTCGTCCGCGCTTCCAATGACACACGCAGACCCTTTG
AACAACAACAACAACAACAACAACAACAACAACAACAACAACAACATCAA
TAATAACCATCACCATCATCAACTCGATTCAGTGCCAGGTGAAACAGGTA
AATAGTTTTCTCTTTATTCACTTACATGAACTGAACCTTGAGGAGTGGAG
ACCATCAAATGTGGTGGATCTCTGAAGTTTCAAAATTTATGACGAAGGGT
GTTTCTTTTATCCATACTCCTTATAAGGAAATAACACTCTCCCTCATAAA
ATCTGAAGCCTCCTTCGATCAGCAACTGTGATCTATAATGTTTCCCGCCC
GTCCACCTACGCCACAAAACGCCATAAGAACCGTTTCTAACCGTTTCTGT
ATATCGTCAATGGAATGTTTTTTGAACATTGAAGCTAGTCGGCTCAAATC
CACACTTTTTCGATATTCATTCAATCGATAATCAATCAATGGACATCAGA
CGATTGTATGTAAATCACCTTAGGTAGGAATCTCGTTGGCACCTGCTTCA
GTCTGATGGGGAAATTTAACATTAAAATAAAAGATGAGCTTGGAGATTGA
TTCTCTGGTGGCGAAAGTGAGTAAACCATCGCACGCAGGTTCATCTGTAG
TTGTGCTCAGAACTAATTCAATTTGATCGTTGAGAATGAATAGTCTCCAT
TCACTAAACGAATGGCAACAGTCACGCGATGGGTGCGCTAAAAATTATCA
GCATGATCAGAGCTTCGAAATCAGAATGTATATTCATCAATTCAATTTGT
TCTTTGTTAACAATCTAATAATCTATACTTATGATGGCCAAAGACTACAC
GTTTTTTATAAAAACAAACTAAAGAACACGAGGCTTTGACAGCAAAAATA
TTAAGAACAACTTGAAAATATGTTGAGGTTTTGCCAGGAGTTTTGCGGAA
CCTTGAACACCCGATTTCTTAGGAAAATAGCCAATGTGGTAAAAATATGA
ATATGTTAAGAAAATCTTTTGGCTTAAAACGCAAAAATCAAAATCCGTAG
GCTTTAAAAATTTTGGATGTTCTTAAAAAAATGTGTATTTGAAGAACGGA
CCTATCCCAATCTAAGACCACACCCATGTTCAAAAAATGTTTTCCTCCAG
GAGTATTTATCGAAGATTTGTTTAGATGTGATAGCTGATAATAATTCATC
ATTCATTTATTTCGAAAGTTTTGACACTAATATCAAGTGATCACCTTGAG
CTGCTTGATTGATTACAATCTATCCCTCTTTCTTTATTTTCTAATCCATG
AACAGGAGGATTTGGAATCCTATCAAATTAATATTTTTTTTTACTTTTCC
CGACATTAAGTAGTTTTGATCCGGCGACAACCTATTTTTTCTTCTCCAGC
CAAAGTTCATAATATCTGGAATGGGTTAATTTTTTACAATAAAAGTGGAC
GCTGAAATTTGACCCAGTGAATTGATAAATATACAACAGTAATATGCGTT
TTTTTTTTTATAAGTACGTCAAAAATTTTCGAAGCCTTCGGATGTTCTTA
GTTTTTTAGATTTGAAGCCTAAAAATGTTCTTATAATGTTCTTATTTTCA
GCATTTTTTGAGCATTTTGATGTAATTTCTTAAGAAAATGCATGTTTTTA
AGTCTCCAAAGCCTTAGAATGTTCTTAGGTTGTTCTTAAATTTTTGGGCC
TCGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAAAACGTGT
ATGCTTCTAGCTATACCAGCCTTGTTAATCTAATATGATTACACCATTAC
ACAATTTTAAGATATTAGATTACAATGGACAATCAATACCCATTTTCGAT
GAATTTGTAGGACAATAGAATTGTTCTCAAAGAGTGCTTAATTAAGCTCT
TCATTTGATAGCGTGAAATTGTAACCTACTACAAGTCCCCGTAATTGAAT
TTATAAGCCACACTTTCCTGTCACAGTTTCAAACAGATTCCATTTTAAAT
GATTGAAATGTCTACTAAAGACGGCGTGTGAATGAATGGAAGGTTGGTTT
TCTGTGGAAGTTTTTTAGAGGAAGAATTTTCTTTTGAAATTTTGCTTGTG
ATGAAAGGCATTCAAGCGTGTGAAGTATTTCTTTCAAAAGTGTCAAAAAG
TTTATTCGTTTCTTGTCTTCAGGCTGTAAATGTTATCAGTTTTTCAATCA
AAATTTCTGTTTGGTTCAAATATGGTTCAATCAACATATTTTTGGTTCAA
GCAGTAATTTTTAGAAACTATTTTTGTAACAAGGTTTATGTTATAGTTAG
TGTAATAATTCGTAAACAAATGTTCTTCGCTATACAGCTGGTGCGAAAAT
TTTCGAACATCCTGTCGTAAACTTGTCATATCGAAATTGCTCGTAGCTAT
TCAAACAGTGTGAAAAGTGTCGAAATTTCATGTCGAAAATAAACTTGTCT
AGGGATTATCTGTCATTTGCTAATTATTTTTTTGGTAAATTTTTTTAACA
TCTGTTTACGGTAAGTGGCATTTCTTGTCGTGAAAAACTGACAAATAAAT
TTTTTAGATGATACCAAAATAAAATTATTTTGTGAATTTCATTGATGGTT
AGCTATATGGGCTCTTGGTTTTCTTGTAAATTTTGTAGAAGAGTTTTTGG
GTAGAAATCGCAAGTTTAACCATCATGGGAGAGAAAGATGTTTATTGTAT
TGATAAAACTATGGCTGTACTGTATAACATTATAATGTCATTGATAGATT
GCAGGTTTGTTAGCTTTGAAAATCGGAATGTGTCTTTTGTAGATGTTCTA
AAAGAAGTTGGCGTGAAAAATTACGGAGAATATACGTGAATGTATTTTTG
GTCTAAAATGTGAAGTTACAGTGATGGTAAATAGCCAAGCCTGGCTATTT
CAAACGAAGATGTGTTGATGAGACCTCGACCAGTAATCACGTGGTCAAAT
TTCGCCGTTAGATTTCTGTTGACCCTAAAATTGCACACTTTTTATGAAAA
AAATTCTATATGGAGATTGAGAAAAGTCACGATAAGAAAATTTATAAAAT
GTAACCCAAAGGAATTATTATCTTCGGTAATTAAAAAACGAATTTATTCT
TCTTTCACCAGATTTGAACAGTGCTGTATCATCAGAAACGATGCCAGATT
CCGAAGATTCCATTTTCAAAGATGACGAAGATGAGAAAGACAAAAGAAAA
CAAAAGAAACGAGGGATTTTTCCCAAAATGGCCACCAATATCATGAAAGC
TTGGTTATTTCAACATTTAAATGTAAGCAGTATATTCAATATCTCATTTA
GGCTTTGCGAAATTGAATACGATTGTAATTTTCAAAACCACTCTTGTTTG
AGTTGATTCTACTCACATGTTACCTACTTAGGCTCATTAGTTTGGACTCC
CACAGTAATAATGTAATAACTAAATTGATGCCTAAGCAGATTATTCACGT
TAAAGTGTTACCCCATCTATCAATGCATTCATGAACCTATCTGCCGCATC
TGTAACTGAAACTTTTATGAATATTTAACACTTCTTTTTTTTCTAGCATC
CATACCCCTCAGAAGAACAAAAACGTCAACTGGCAAATGAAACTGGTCTT
ACCATACTTCAAGTTAATAATTGGTATGTTTTCCAACAATCTTTTAACAA
CCTGGCTATTCGTAAACGATAGACAGTATTCCGGTTCTAGAAGGCTGCCC
TGTCCGTAGACGTCAAATTTCATTTTTTTACCTTGCGCTGTAATTTTACA
TAAAACTATTTGTTTTTTTTTTAGATTGACGATGTGCTCAAGCGCTAAAC
ATTGAATTTCAAAAATTTTCATCATCTGTTGAAACTATAGTCCCCGATCA
ATACTTTTCTTTTCCCTTTTCAGAAAAGCTTATCATCGTCAATATTTTTT
CATATTTCATGTAGGTTTATCAATGCAAGGCGGCGTATCGTCCAACCCAT
GATCGATGCATCAAACCGGGCAGGTAAATCACCGGTTGTCACAGTATATA
AATCACGTAAACGTAAAAATTCGGGATCGGACAGTATTTCACCAGGACCT
TTTCCCTATCCACCAATGGGTGGCCATTATTCGGCGCCATATTTAAACGA
ACATTACTCTGGGATGTATTCACAATACCATAATGACATCACAGGAGCTT
CAACGACTACACCGCATGCGCACTACAGTCCAAGGTCGTACGGGTGTGGC
GCATCTGATCAACATTCGATGGGTGTCTCTCTACCTCCACAAACCAGCTG
TGCTCCTATGAGACAGCATTCTTCATCTTCTTATGGAACTTATAGGACCT
CCCCGGTCCCTCCTACTCCACAGTCTCCCTTCTTAGGGCACACACATCCT
TCAATGATGCCACCGTCTACGAATACGCCCAACCTTCATGGTTACCACCA
GACACACCCAGCATCTTATCCGCCCCCTCCGCCTCACCAATACACGCCCC
ACGAAGAACTCACGCCCCATACCGTTCATAGTGTTATGAATATGCATAAT
ATATAACACTTGCCTCCCTTCTTTCTCCCTTATTACGATATAAATAGTTT
TCACCATTAATTTTTTCTGTGTGTTGTTTTTTATACTATTTTTTAAGAAA
TTTTATGTTGCTGTTATATTAAATAAATCATAGTTCATTCTCCTTAGGGC
CATGTAATGGTCTGGAGAATTTTTTAAAAGAAATTTTAACCATTTTGTTA
GATAAAAAAAAGTTAAAAGCGGTCGTTAATATATGTTTTCTATAATATTT
TTAACCTAACTTCGGAGAATCGGTGATGAATATCCTTAAATAACATATTT
TCACATTTTAGGAAGCTATTTCTAATGGATTCCTTTTGAAAATGCAATCG
TTTGATGTATTTTGAGTTTTTTAAATTCTAATTTTTCTTAAAATTCCAGT
TGCTTTTCTGTCTTAACTTTAAATTAATTAAAAAGTGCTTAATATTTATT
TTATATTATTTCGCTTGATTTTTTAAAGAAAATACTTTTTTCTGCTTTTA
GAAATTTTTGACCGTTTAATAATGGGCTGTAAATAATGATGTAGCTTTGT
CCTTTTTGTAATTTTACCATATTTTAATTAAAAGCAAGAACTTTAGTTCT
TACCTTATTATATGAGAAAATTTGAAATAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002564XLOC_002564Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004561-exon-sc0000045-1575043694:654619..654804TCONS_00004561-exon-sc0000045-1575043694:654619..654804Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1575043694:653908..654106TCONS_00004561-exon-sc0000045-1575043694:653908..654106Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1575043694:650783..650943TCONS_00004561-exon-sc0000045-1575043694:650783..650943Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1575043694:650432..650508TCONS_00004561-exon-sc0000045-1575043694:650432..650508Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1575043694:648923..650140TCONS_00004561-exon-sc0000045-1575043694:648923..650140Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1510915933:654619..654804TCONS_00004561-exon-sc0000045-1510915933:654619..654804Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1510915933:653908..654106TCONS_00004561-exon-sc0000045-1510915933:653908..654106Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1510915933:650783..650943TCONS_00004561-exon-sc0000045-1510915933:650783..650943Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1510915933:650432..650508TCONS_00004561-exon-sc0000045-1510915933:650432..650508Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1510915933:648923..650140TCONS_00004561-exon-sc0000045-1510915933:648923..650140Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1491911889:654619..654804TCONS_00004561-exon-sc0000045-1491911889:654619..654804Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1491911889:653908..654106TCONS_00004561-exon-sc0000045-1491911889:653908..654106Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1491911889:650783..650943TCONS_00004561-exon-sc0000045-1491911889:650783..650943Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1491911889:650432..650508TCONS_00004561-exon-sc0000045-1491911889:650432..650508Clytia hemisphaericaexon
TCONS_00004561-exon-sc0000045-1491911889:648923..650140TCONS_00004561-exon-sc0000045-1491911889:648923..650140Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:648923..654804 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	5.64112e-07	1.89252	1.2221	5.84019	5.18634	3.70043	2.36911	0	0.700115	1.06924	0.518082	0.765544	0.959267	0	0	0.253015	0	0	0	2.79579e-06	0.877589	7.03956	5.02963	0	0
Blast
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BLAST of TCONS_00004561 vs. Swiss-Prot (Human)
Match: ME3L1 (Putative homeobox protein Meis3-like 1 OS=Homo sapiens GN=MEIS3P1 PE=5 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.692e-35
Identity = 59/73 (80.82%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:  484 RGIFPKMATNIMKAWLFQHLNHPYPSEEQKRQLANETGLTILQVNNWFINARRRIVQPMIDASNRAGKSPVVT 702
            RGIFPK+ATNIM+AWLFQHL+HPYPSEEQK+QLA +TGLTILQVNNWFINARRRIVQPMID SNR G+    +
Sbjct:  165 RGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRTGQGAAFS 237
The following BLAST results are available for this feature:
BLAST of TCONS_00004561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ME3L11.692e-3580.82Putative homeobox protein Meis3-like 1 OS=Homo sap... [more]
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