TCONS_00004557 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004557
Unique NameTCONS_00004557
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004557 ID=TCONS_00004557|Name=TCONS_00004557|organism=Clytia hemisphaerica|type=transcript|length=722bp
AGCTCCGTTTAACTTTATGAGAGTACCTGAGCGGAAAGCTTTCTAGCATG
AAAGTAATAAAGTGTGCTGTGACGATGTTTTAATCAAcaattttgtttca
ataaatcGCAGTGCGAGGCAGGAAAGGGCAGCAAAAAATCAACTCACGTC
CttttaaatgttaaaaagaccaagcaaaatattattaCTTCTCATAGTAA
AAATTTGCTTTTcacatcaaaatatttaaagggTTATCGAAGCAAAAGCA
AAAGGTGACAAGTATCTCTGGTATAAATACGTTGCTTTCAAAGTACTTTG
TAACTAAGGTTTTAAAAGCTGTGCTGTAAGTTTTGAAAAGGATTTCTTTG
CTCCTGagtaaaagctttttgaaatttctactTTTAATTGGATTGTCTGA
TTATTTTCATCCAACTTTCATCAAAATGCGGGAAGTAGTATCAATTCATA
TCGGACAAGCTGGTTGCCAAATAGGGAACTCGTGTTGGGAATTGTATTGT
TTGGAACACGGGATTTCCCCTGATGGATTGGTTCCTGATGGTAATGAAAT
CAATGGTGCCTGCAAATCCTTCTTCTCGGAAACAGGAGGCGGGAAATTCG
TTCCCAGAGCTGTCTTTGCTGACTTGGAGCCCACTGTTATTGACGAGACG
CGAACGGGCAAGCACAAAGATCTCTTTCATCCTGACCAATTGATCAATGG
AAAAGAGGATGCAGCAAACAAT
Run BLAST on NCBI

transcript from alignment at sc0000045:458163..459705-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004557 ID=TCONS_00004557|Name=TCONS_00004557|organism=Clytia hemisphaerica|type=transcript|length=1543bp|location=Sequence derived from alignment at sc0000045:458163..459705- (Clytia hemisphaerica)
AGCTCCGTTTAACTTTATGAGAGTACCTGAGCGGAAAGCTTTCTAGCATG
AAAGTAATAAAGTGTGCTGTGACGATGTTTTAATCAACAATTTTGTTTCA
ATAAATCGCAGTGCGAGGCAGGAAAGGGCAGCAAAAAATCAACTCACGTC
CTTTTAAATGTTAAAAAGACCAAGCAAAATATTATTACTTCTCATAGTAA
AAATTTGCTTTTCACATCAAAATATTTAAAGGGTTATCGAAGCAAAAGCA
AAAGGTGACAAGTATCTCTGGTATAAATACGTTGCTTTCAAAGTACTTTG
TAACTAAGGTTTTAAAAGCTGTGCTGTAAGTTTTGAAAAGGATTTCTTTG
CTCCTGAGTAAAAGCTTTTTGAAATTTCTACTTTTAATTGGATTGTCTGA
TTATTTTCATCCAACTTTCATCAAAATGGTAAGTTTGTTTTCACTTTCAT
TAGTCTCAATTTTTCACCCTGAACGTCGGTTTTTTGTCATGTGCAAGACT
AACTACTAACTTAACAAGAAATCGTTAATTATGAAACGGACAGTCCTGAT
TACACATGATTCATTGCAATTATGTTTATGTGATGGAGTCTAATGCCCAG
CCCCTTTTTTATTCGAACAAAGAATCGGAGCCTCGTCAAAATGGCCNGTC
CTAATAAAGTCCAGGGGTTGGAAAATTTTCGAAAAATTAACAAGCGGGGG
GGGGCGTTTATTTGGAACCTAAGAGTAGGAATTTTCTTTTATTTTGCTAA
ATTGACAATTGTTTTTATTCTTCCAGCGGGAAGTAGTATCAATTCATATC
GGACAAGCTGGTTGCCAAATAGGGAACTCGTGTTGGGAATTGTATTGTTT
GGAACACGGGATTTCCCCTGATGGATTGGTTCCTGATGGTAATGAAATCA
ATGGTGCCTGCAAATCCTTCTTCTCGGAAACAGGAGGCGGGAAATTCGTT
CCCAGAGCTGTCTTTGCTGACTTGGAGCCCACTGTTATTGGTAAGAATTG
CTGATCAAAATTATTGGCAATGAATAGTGCTTCGTCATGATTATTACTTT
TCTCATTTGACCGAAATTCAATCCCACAATCCTTTTCGTCTTAATTCAAA
AGTCGTGAAAGTTATTACTTGTTCTTTGTAATTGAGTGTAATTTGCGTGC
AAGCGTAATAAACGCAAAGGCTGATGGGATTGAATTTCAGTCAAACTTAA
AAATCAATGTCTATTTTTAGATTCGCGACGGTATGCTATTAATCAATACT
ATTCTCGTCTTGTATGTTAAACTTTACAATCCTCAATCTGTCATCTCAAT
CGATTTCGACGACGTAGTTTTTCTCGGAAGACTGCTTTTTGCTAATGCTC
TACTTTTTGAAATAGCATATCCGCAACATGCCCTAATAGTTCATCGATCG
GCACACAAATAATTTTTGAACATTATTTAAGATTCTCTTTCATAAATGAT
TCTCTCATTCTAGACGAGACGCGAACGGGCAAGCACAAAGATCTCTTTCA
TCCTGACCAATTGATCAATGGAAAAGAGGATGCAGCAAACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002561XLOC_002561Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004557-exon-sc0000045-1575043694:459278..459705TCONS_00004557-exon-sc0000045-1575043694:459278..459705Clytia hemisphaericaexon
TCONS_00004557-exon-sc0000045-1575043694:458716..458929TCONS_00004557-exon-sc0000045-1575043694:458716..458929Clytia hemisphaericaexon
TCONS_00004557-exon-sc0000045-1575043694:458163..458242TCONS_00004557-exon-sc0000045-1575043694:458163..458242Clytia hemisphaericaexon
TCONS_00004557-exon-sc0000045-1510915933:459278..459705TCONS_00004557-exon-sc0000045-1510915933:459278..459705Clytia hemisphaericaexon
TCONS_00004557-exon-sc0000045-1510915933:458716..458929TCONS_00004557-exon-sc0000045-1510915933:458716..458929Clytia hemisphaericaexon
TCONS_00004557-exon-sc0000045-1510915933:458163..458242TCONS_00004557-exon-sc0000045-1510915933:458163..458242Clytia hemisphaericaexon
TCONS_00004557-exon-sc0000045-1491911889:459278..459705TCONS_00004557-exon-sc0000045-1491911889:459278..459705Clytia hemisphaericaexon
TCONS_00004557-exon-sc0000045-1491911889:458716..458929TCONS_00004557-exon-sc0000045-1491911889:458716..458929Clytia hemisphaericaexon
TCONS_00004557-exon-sc0000045-1491911889:458163..458242TCONS_00004557-exon-sc0000045-1491911889:458163..458242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:458163..459705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0358608	0	0	0	0.112573	0.137205	0.0401772	0.114665	0	0	0	0	0	0	2.1982	1.57631	0	0	43.9838	22.8693	4.24472	2.77133	0	0	0	0	0	0
Blast
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BLAST of TCONS_00004557 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 2.875e-44
Identity = 72/102 (70.59%), Postives = 81/102 (79.41%), Query Frame = 3 
Query:  426 MREVVSIHIGQAGCQIGNSCWELYCLEHGISPDGLVPDGNEING---ACKSFFSETGGGKFVPRAVFADLEPTVIDETRTGKHKDLFHPDQLINGKEDAANN 722
            MRE +SIH+GQAG QIGN+CWELYCLEHGI PDG +P    I G   +  +FFSETG GK VPRAVF DLEPTVIDE RTG ++ LFHP+QLI GKEDAANN
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANN 102
The following BLAST results are available for this feature:
BLAST of TCONS_00004557 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1A2.875e-4470.59Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P... [more]
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