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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004548 ID=TCONS_00004548|Name=TCONS_00004548|organism=Clytia hemisphaerica|type=transcript|length=3345bpRun BLAST on NCBI transcript from alignment at sc0000045:332407..344328- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004548 ID=TCONS_00004548|Name=TCONS_00004548|organism=Clytia hemisphaerica|type=transcript|length=11922bp|location=Sequence derived from alignment at sc0000045:332407..344328- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00004548 vs. Swiss-Prot (Human)
Match: PTK7 (Inactive tyrosine-protein kinase 7 OS=Homo sapiens GN=PTK7 PE=1 SV=2) HSP 1 Score: 209.149 bits (531), Expect = 1.595e-92 Identity = 179/633 (28.28%), Postives = 277/633 (43.76%), Query Frame = 3
Query: 234 MSNNTLKITKVKRRHAGTYSCFAK-HKTEFRFAEFKVEIMYIQQANPLEPRKTYSGVEVEMQCIPPLGKPNPKPLWLKDG-KTFSDPRVDQSTFTLKISKTQLSDTANYTCVSMGYK-NRTTTASLTVYEKGPFSVKPEKINATEGDKVEFKCISGTKPPLPLKWFKRNKQCDDKGCKTLDEDVDLMSDVRFVKTDDGVLTITKVKPEDKADYVCTRFLGATTEEAVVKLHVITLIKIDLKPKASIDIDSTKPHTVACPYQGVNPKSISWIRKDTGALPSHMNVDGSTLVITKPQLSDSGVYTCKIV-GPLNSDEATVNLTMYKGLKFIKRPSNITGVVSKPLWIDCVGSGYPEPWVFYFRIGKGGGE-LNSTYFTTH----KNGTLYIPKLRKEDQGKYMCILKNDPGGSKTSQ----FELTVKSENEKAGASSP--MHRTIGIAVGCAGVYILLVIGLMIYCRAR-RARLLK----GIITEVDGEGKDPLI-GNGNKDI------------PLDDMKKFS---QWEYKRSGLEEIGTLGHGKMGRVYKANAVDIRPSEKRTLVAVKEFNSDEKEHKDEFNIEMEMFTQLDHINVVKLLGVCMNASPPDPWLLITDFGEEGDLKGYLDRNKN 2024
+N +L +T+V+ R+AG Y C + + E + + I+ EPR +G E + C+PP G P P W G + + RV Q L ++ SD YTC + R ++TV + KP+ EG C++ P + W+ RN+ + D RF +G L I V+ D Y C A + EA ++ V+ +K P+ ++ K TV C G +I W R D +LP + + TL + D+G YTC GP A V LT+ + F P T + C G P+P + + KG L+ T +NG+L I + ED G+Y CI N T + V E+E G+ P M +TIG++VG A YI+ V+GLM YC+ R +A+ L+ G E++ PL G + +I P K+ S + + RS L+ I TLG + G V+ A A + TLV VK S +++ + +F E+EMF +L+H NVV+LLG+C A +P ++ ++ + GDLK +L +K+
Sbjct: 281 FANGSLLLTQVRPRNAGIYRCIGQGQRGPPIILEATLHLAEIEDMPLFEPRVFTAGSEERVTCLPPKGLPEPSVWWEHAGVRLPTHGRVYQKGHELVLANIAESDAGVYTCHAANLAGQRRQDVNITVATVPSWLKKPQDSQLEEGKPGYLDCLTQATPKPTVVWY-RNQML-------------ISEDSRFEVFKNGTLRINSVEVYDGTWYRCMSSTPAGSIEAQARVQVLEKLKFTPPPQPQQCMEFDKEATVPCSATGREKPTIKWERADGSSLPEWVTDNAGTLHFARVTRDDAGNYTCIASNGPQGQIRAHVQLTVAVFITFKVEPERTTVYQGHTALLQCEAQGDPKPLIQW----KGKDRILDPTKLGPRMHIFQNGSLVIHDVAPEDSGRYTCIAGNSCNIKHTEAPLYVVDKPVPEESEGPGSPPPYKMIQTIGLSVGAAVAYIIAVLGLMFYCKKRCKAKRLQKQPEGEEPEMECLNGGPLQNGQPSAEIQEEVALTSLGSGPAATNKRHSTSDKMHFPRSSLQPITTLGKSEFGEVFLAKAQGLEEGVAETLVLVKSLQSKDEQQQLDFRRELEMFGKLNHANVVRLLGLCREA---EPHYMVLEYVDLGDLKQFLRISKS 892 HSP 2 Score: 151.754 bits (382), Expect = 1.595e-92 Identity = 66/166 (39.76%), Postives = 106/166 (63.86%), Query Frame = 1
Query: 2011 IATRI*VYMSMCVANGMDYLIAQHYMHRDLAARNCVVRANKSVSISFLSLCEDTYKDDYFSLNDYPVPLRWLSPECIQEENYSEKSDVWSFGITVWEIFSNGDRPYANFDNDAVLKGV-CLDLRLTKPKDCPDSIFHIMESCWLKEASERPSFADLKSAINDVKID 2505
++T+ V + VA GM++L ++H+DLAARNC+V A + V +S L L +D Y +Y+ VPLRW+SPE I E ++S KSDVW+FG+ +WE+F++G+ P+ +D VL + RL +P+ CP ++ +M+ CW +RPSF+++ SA+ D +D
Sbjct: 902 LSTKQKVALCTQVALGMEHLSNNRFVHKDLAARNCLVSAQRQVKVSALGLSKDVYNSEYYHFRQAWVPLRWMSPEAILEGDFSTKSDVWAFGVLMWEVFTHGEMPHGGQADDEVLADLQAGKARLPQPEGCPSKLYRLMQRCWALSPKDRPSFSEIASALGDSTVD 1067 HSP 3 Score: 100.523 bits (249), Expect = 2.874e-21 Identity = 118/485 (24.33%), Postives = 192/485 (39.59%), Query Frame = 3
Query: 90 SSAVAAVDSTLLVDCVTNPTDGVNVYWEKGGEAVPLQPTSGKEPEFFYMSNNTLKITKVKR-RHAGTYSCFAKHKT---EFRFAEFKVEIMYIQQANPLEPRKTYSGVEVEMQCIPPL-----GKPNPKPLWLKDGKTFSDPRVDQSTFTLKISKTQLS-------DTANYTCV---SMGYKNRTTTASLTVYEKGPFSV--KPEKINATEGDKVEFKCISGTKPPLPLKWFKRNKQCDDKGCKTLDEDVDLMSDVRFVKTDDGVLTITKVKPEDKADYVCTRFLGATTEEAVVKLHV-ITLIKIDLKP--KASIDIDSTKPHTVACPYQGVNPKSISWIRKDTGALPSHMNV--DGSTLVITKPQLSDSGVYTCKIVGPLNSDEATVNLTMYKGLKFIKRPSNITGVVSKPLWIDCVGSGYPEPWVFYFRIGKGGGELNSTYFTTHKNGTLYIPKLRKEDQGKYMCILKNDPGGSKTSQFELTV 1466
SS A L+ C V+VYW G P+Q T E + ++L V R + +GT+ C A+ E R A I +I+ A P+ + S E++ Q L G P P W +DG SD QS T+ + L+ + Y+C + G + +L++ ++ V P+ + ++ F C +PP L+W D+ L F +G L +T+V+P + Y C +G + L + L +I+ P + + ++ P +G+ S+ W LP+H V G LV+ SD+GVYTC VN+T+ ++K+P + KP ++DC+ P+P V ++R E + F KNGTL I + D Y C + + P GS +Q + V
Sbjct: 39 SSQDALQGRRALLRCEVEAPGPVHVYWLLDG--APVQDT-----ERRFAQGSSLSFAAVDRLQDSGTFQCVARDDVTGEEARSANASFNIKWIE-AGPVVLKHPASEAEIQPQTQVTLRCHIDGHPRPTYQWFRDGTPLSD---GQSNHTVSSKERNLTLRPAGPEHSGLYSCCAHSAFGQACSSQNFTLSIADESFARVVLAPQDVVVARYEEAMFHCQFSAQPPPSLQWLFE----DETPITNRSRPPHLRRATVFA---NGSLLLTQVRPRNAGIYRC---IGQGQRGPPIILEATLHLAEIEDMPLFEPRVFTAGSEERVTCLPPKGLPEPSVWWEHAGV-RLPTHGRVYQKGHELVLANIAESDAGVYTCHAANLAGQRRQDVNITVATVPSWLKKPQDSQLEEGKPGYLDCLTQATPKPTVVWYRNQMLISE--DSRFEVFKNGTLRINSVEVYDGTWYRC-MSSTPAGSIEAQARVQV 498 The following BLAST results are available for this feature:
BLAST of TCONS_00004548 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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