|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004547 ID=TCONS_00004547|Name=TCONS_00004547|organism=Clytia hemisphaerica|type=transcript|length=5869bp ccgggggttggagaattttcgaaaaattaacaagcgtgggagggggcgtt tatttggaacctaagagtatggAAAAAAGGACAGTTTTCATGTTGGTTAT CttccaaacaaaattatataaaaattaaaaccaatAAATAATACGATGTC GACAATTcgatcaaaaaatatatttaaagaaAGTCACAAAAAATTATgct aaagttttgaaaattatgcCAAATGAAAAAGTAATTAAATATATTACAAA TCCTAAAGATATACTTACTAGAATCAATCAATGCTAAGACGAAATGGCTT TTTCAAGAAATAATTGTGTAACAaaccaaaaatccaaaatcttcTTGACA ACCTTGTCAGTTTACActatagacagctccaggcttttcaAGGCTTTAAG AACATGACGTAacctatacacgtttttttataagaacaaactatgtaaga gcataaggcttcgatgttcaaaatattaagaacaagttaagaacatttta aggcttcgcagactctaaaacacccaatttcttaagaaaatggacaaaat actcaataaatgaagaaaataagaaaactttaagaacatttaggcttaac agaacatccaaaagcttcaaaatttttggatgttcttataaaagaaacgt gtagTTTATGTGAATTACCGAAAGGTCTAAAGCTAAACAAATATCAGTGT TTATCTCttaattgtattttttaaataaaattcattcagaagcagccaac gagcccatttccccaaaatatctgtttccctttttcaggagagagctttt ttgaaaaattgggaaacagattcaattttctaggaaagaccttttcctta aaactatctgtttccccgctccagctgatgacgtcatcagagagaaacag atcaatatttctaggagatgacatgATAAATTGGGAAACAGATATCTGTT TCCAAAAAGATGATATTGCATTGGAAACAGATTGAACTTTCTGATGGAAA ACAGATATCAATCACAAAGAGCAAGGGAAACAGATGAAAATTTCCAGGAG GGGAAACAGATATCCTATTCCTTATAATAAGCTTGGGAGAACAGATCAAA ATTTTACTTCTGAAAATTGTGGAAACAGACCAAATTTTCTAGGGAAGATA CTTTTAGATTAAAAATTTAGGTTTGGAGGAGAAACAGATTTATTTCTAGG AATAAGATATTTGGAACTTCAGAACTTTTGGCCAACAGATCAAATTTCCA GGAAGGCTATGCCTGGGAAACAGATGTTTAAAAAAAGGTCCTCGCTGGAT GCTTTCGTTCATTTTCAGTGAATATTTTCAAAATAAACCCCAAGCCTCTG ATATTAATATTAAAGTTGATAATATACAAATAACCAAATATGTAAAAATA ATAACGAAATTAGTTTCAAAAATGAAAGATACATTACCCTTAAGATATTC CCTAATTTTTGTATGTATTACGTTTATATTACGTTCCCTAAAGAATGGGT CAATAAAAAAACACTTTCTTTATCCAGATGAGGTATGTAAAAGccaTTAT CAAAGAGCTTTCGAAACTATAATCATGAATATTGTTCCGAAATTAGTGGA AATAATAGGCAACTCAAATTCTAATGCCTTCAATAATAGTAACCAATATA AGAAATAAAATCCAAACCAatgttaattaaaaaataaatgataaaaaatg ctttttgttactttatttttcactttttgtttatatttgatgcATGTAAA AATCTATGGCAGTGAGTTTTTTGTTCATTAAATCACCTCGATCAAGTATT TTGTGTAGATTTCAAAGGAGTATCCTCGGTTATCTCAGCTTTTTTTGTTG TTCGTCGTCTCAAATACAAAATGACCAGCAATAAAGCAATCAAAGCCAAC GCAACTAAAATGATCAGAATGATGTaaccaattttgatttttgtctcTTC TCCCAAGATCTCACAGTTTTGTCCTGAATATCCACCGACACACAAACATT GATATTTATCTGAAGTTTCATCCAAAGGTTGGCAAGTTCCATTGTTTTGG CAAGGATTGTTGAAATAACAAGCTTTTTCAATCCCACATTTCTCTCCAAG AAATCCTGAACTGCAGTTGCACATAAAAGTGTCTACAATTTCCAAACATG TTCCATTGTTTTGGCAAGGATTGTTGAAATAACAAGGTTTTTCAATCTCA CATTTCTCTCCAAGAAATCCTGAACTGCAGTTGCACATAAAAGTGTCTAC AATTTTCAAACATGTTCCATTATTTTGGCAAGGATTATCCAGACATGCGT TTTCGAACTGACAAAATCTTCCCTGATTCTTCTCGGAGCACACGCAAGTA TAATCCAGCTTATCGACAACTTTACATGTTGAATTATTCTGACATTCATT CAAAGAACAAGCAGTGCATTTCAGTTTGTTGGTCCGGTAAAGGTCTTCGT AAATATCATCATCCTTCAAGTCTGCTGGTGTTTTACaattcccaaaaatt aaaaatttatcattacCATTAAAAAAGTATTGCATGGTGTTAAATAAAGC ACAGTCACAATGCAATGGGTTCTGCTCAAGATAAAGCTCATTAGGTTTCA AAGCAAACCAATTTTTTTGAAGCGTTGTCAAACTGTTGTTGGTAAGATCT ACGGATAGAGAATTGAAAGTCTTTGGTGGAAAGTCTGTAAATTGATTACT TTTCATCTTCAGAATCACTAACCGTTGGTTCCGGAACACACCTTCAGGGA GGGAGGTCAGCTTATTATAACTGAGCCATAACCTTTCTAACTTGGTAGCC GCTGCAAACGCATCTCTTTCAATTTTCCCAAGAGCATTTCCATCAAAACT AATCCACAGCAGGTTCTCGGCACCATTTAGTGTACCGTTTTTCAACATTT CAATCTGATTATTCTCTGCAAAGACCTTTTGGAGGTTTTGTAGGTTCTCA AAAATGTTTGGTTCAATCTCTGTAAGAGTGTTGCTGAAAATGTCAAGGAT CTTGATATTTTGGTAGCCGAGAAAATCATCCCTGCTAATCTTGCtgattt tgttttgatcaaTCGAAAAACGGTGGACAGATGGTATGTAGTCAGATACA TTTGCTGGTGGCTTTGTCAGAAGATTTTGTCCAAGTTCAATTATCTCCAA CTTGCTGAATTTGGTGAAAGCTTCAGCTGGGAAATTAGTAATCAAATTGA CTTTCAGTATTAACTCTTCTGCTGTAAGTGGGTCACCAGTATGGGCAATT TCAAGNNNNgctccagctgatgacgtcatcagagagaaacagatcaatat ttctaggagatgacatgataaattgggaaacagatatctgtttccaaaaa gatgatattgcattggaaacagattgaactttctgatggaaaacagatat caatcacaaagagcaagggaaacagatgaaaatttccaggaggggaaaca gatatcctattCCTTATAATAAGCTtgggagaacagatcaaaattttact tctgaaaattgtggaaacagaccaaattttctagggaagatacttttaga ttaaaaatttaggtttggaggagaaacagatttatttctaggaataagat atTTGGAACTTCAGAACttttggccaacagatcaaatttccaggaaggct atgcctgggaaacagatgtttaaaaaaaggtcctcgctGGATGCTTTCGT TCATTTTCagtgaatattttcaaaataaacccCAAGCCTCTGATATTAAT ATTAAAGTTGATAATATACAAATAAccaaatatgtaaaaataataacgaa attagtttcaaaaatgaaagataCATTACCCTTAAGATATTCCCTAATTT TTGTATGTATTACGTTTATATTACGTTCCCTAAAGAATGGGTCAATAAAA AAACACTTTCTTTATCCAGATGAGGTATGTAAAAGccaTTATCAAAGAGC TTTCGAAACTATAATCATGAATATTGTTCCGAAATTAGTGGAAATAATAG GCAACTCAAATTCTAATGCCTTCAATAATAGTAACCAATATAAGAAATAA AATCCAAACCAatgttaattaaaaaataaatgataaaaaatgctttttgt tactttatttttcactttttgtttatatttgatgcATGTAAAAATCTATG GCAGTGAGTTTTTTGTTCATTAAATCACCTCGATCAAGTATTTTGTGTAG ATTTCAAAGGAGTATCCTCGGTTATCTCAGCTTTTTTTGTTGTTCGTCGT CTCAAATACAAAATGACCAGCAATAAAGCAATCAAAGCCAACGCAACTAA AATGATCAGAATGATGTaaccaattttgatttttgtctcTTCTCCCAAGA TCTCACAGTTTTGTCCTGAATATCCACCGACACACAAACATTGATATTTA TCTGAAGTTTCATCCAAAGGTTGGCAAGTTCCATTGTTTTGGCAAGGATT GTTGAAATAACAAGCTTTTTCAATTTCACATTTCTCTCCAAGAAATCCTG AACTGCAGTTGCACATAAAAGTGTCTACAATTCTCAAACATGTTCCATTG TTTTGGCAAGGATTGTTGAAATAACAAGGTTTTTCAATCTCACATTTCTC TCCAAGAAATCCTGAACTGCAGTTGCACATAAAGGTGTCTACAATTTTCA AACATGTTCCATTATGTTGACAAGGATTATCCAGACATGCGTTTTCGAAC TGACAAAATCTTCCCTGATTCTTCTCGGAGCACACGCAAGTATAATCCAG CTTATCGACAACTTTACATGTTGAATTATTCTGACATTCATTCAAAGAAC AAGCAGTGCATTTCAGTTTGTTGGTCCGGTAAAGGTCTTCGTAAATATCA TCATCCTTCAACTCTGCTGGTGTTTTACaattcccaaaaattaaaaattt atcattacCATTAAAAAAGTATTGCATGGTGTTATATAAAGCACAGTCAC AATGCAATGGGTTCTGCTCAAGATAAAGCTCATTAGGTTTCAAAGCAAAC CAATTTTTTTGAAGCGTTGTCAAACTGTTGTTGGTAAGATCTACGGATAG AGAATTGAAAGTCTTTGGTGGAAAGTCTGTAAATTGATTACTTTTCATCT TCAGAATCACTAACCGTTGGTTCCGGAACACACCTTCAGGGAGGGAGGTC AGCTTATTATAACTGAGCCATAACCTTTCTAACTTGGTAGCCGCTGCAAA CGCATCTCTTTCAATTTTCCCAAGAGCATTTCCATCAAAACTAATCCACA GCAGGTTCTCGGCACCATTTAGTGTACCGTTTTTCAACATTTCAATCTGA TTATTCTCTGCAAAGACCTTTTGGAGGTTTTGTAGGTTCTCAAAAATGTT TGGTTCAATCTCTGTAAGAGTGTTGCTGAAAATGTCAAGGATCTTGATAT TTTGGTAGCCGAGAAAATCATTCCTGCTAATCTTGCTGATTTNGATCTTG ATATTTTGGTAGCCGAGAAAATCATCCCTGCTAATCTTGCtgattttgtt ttgatcaaTCGAAAAACGGTGGACAGATGGTATGTAGTCAGATACATTTG CTGGTGGCTTTGTCAGAAGATTTTGTCCAAGTTCAATAATCTCCAACTTG CTGAATTTGGTGAAAGCTTCAGCTGGGAAATCAGTAATCAAATTGACTTT CAGTATTAACTCTTCTGCTGTAAGTGGGTCACCAGTACGGGCAATTTCAA GTAACACAGTATCATTGATGTTTTGTCCTCCGCAAGTCCATTTCAATCGT GAACATTGGCATTGTTCAGGACATGTTTGCGCTTGTGAATAAATGATGAA GACCACAAGCAAAATGAATAGAAATCCCTTCATTGTTACTGCCTGGTACG CTCCTCATTGGCCGGATcc Run BLAST on NCBI transcript from alignment at sc0000045:318659..324587- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004547 ID=TCONS_00004547|Name=TCONS_00004547|organism=Clytia hemisphaerica|type=transcript|length=5929bp|location=Sequence derived from alignment at sc0000045:318659..324587- (Clytia hemisphaerica) CCGGGGGTTGGAGAATTTTCGAAAAATTAACAAGCGTGGGAGGGGGCGTT
TATTTGGAACCTAAGAGTATGGAAAAAAGGACAGTTTTCATGTTGGTTAT
CTTCCAAACAAAATTATATAAAAATTAAAACCAATAAATAATACGATGTC
GACAATTCGATCAAAAAATATATTTAAAGAAAGTCACAAAAAATTATGCT
AAAGTTTTGAAAATTATGCCAAATGAAAAAGTAATTAAATATATTACAAA
TCCTAAAGATATACTTACTAGAATCAATCAATGCTAAGACGAAATGGCTT
TTTCAAGAAATAATTGTGTAACAAACCAAAAATCCAAAATCTTCTTGACA
ACCTTGTCAGTTTACACTATAGACAGCTCCAGGCTTTTCAAGGCTTTAAG
AACATGACGTAACCTATACACGTTTTTTTATAAGAACAAACTATGTAAGA
GCATAAGGCTTCGATGTTCAAAATATTAAGAACAAGTTAAGAACATTTTA
AGGCTTCGCAGACTCTAAAACACCCAATTTCTTAAGAAAATGGACAAAAT
ACTCAATAAATGAAGAAAATAAGAAAACTTTAAGAACATTTAGGCTTAAC
AGAACATCCAAAAGCTTCAAAATTTTTGGATGTTCTTATAAAAGAAACGT
GTAGTTTATGTGAATTACCGAAAGGTCTAAAGCTAAACAAATATCAGTGT
TTATCTCTTAATTGTATTTTTTAAATAAAATTCATTCAGAAGCAGCCAAC
GAGCCCATTTCCCCAAAATATCTGTTTCCCTTTTTCAGGAGAGAGCTTTT
TTGAAAAATTGGGAAACAGATTCAATTTTCTAGGAAAGACCTTTTCCTTA
AAACTATCTGTTTCCCCGCTCCAGCTGATGACGTCATCAGAGAGAAACAG
ATCAATATTTCTAGGAGATGACATGATAAATTGGGAAACAGATATCTGTT
TCCAAAAAGATGATATTGCATTGGAAACAGATTGAACTTTCTGATGGAAA
ACAGATATCAATCACAAAGAGCAAGGGAAACAGATGAAAATTTCCAGGAG
GGGAAACAGATATCCTATTCCTTATAATAAGCTTGGGAGAACAGATCAAA
ATTTTACTTCTGAAAATTGTGGAAACAGACCAAATTTTCTAGGGAAGATA
CTTTTAGATTAAAAATTTAGGTTTGGAGGAGAAACAGATTTATTTCTAGG
AATAAGATATTTGGAACTTCAGAACTTTTGGCCAACAGATCAAATTTCCA
GGAAGGCTATGCCTGGGAAACAGATGTTTAAAAAAAGGTCCTCGCTGGAT
GCTTTCGTTCATTTTCAGTGAATATTTTCAAAATAAACCCCAAGCCTCTG
ATATTAATATTAAAGTTGATAATATACAAATAACCAAATATGTAAAAATA
ATAACGAAATTAGTTTCAAAAATGAAAGATACATTACCCTTAAGATATTC
CCTAATTTTTGTATGTATTACGTTTATATTACGTTCCCTAAAGAATGGGT
CAATAAAAAAACACTTTCTTTATCCAGATGAGGTATGTAAAAGGCTTTAT
GCAATCTCATTGAAAAAAAAAAGCCATTATCAAAGAGCTTTCGAAACTAT
AATCATGAATATTGTTCCGAAATTAGTGGAAATAATAGGCAACTCAAATT
CTAATGCCTTCAATAATAGTAACCAATATAAGAAATAAAATCCAAACCAA
TGTTAATTAAAAAATAAATGATAAAAAATGCTTTTTGTTACTTTATTTTT
CACTTTTTGTTTATATTTGATGCATGTAAAAATCTATGGCAGTGAGTTTT
TTGTTCATTAAATCACCTCGATCAAGTATTTTGTGTAGATTTCAAAGGAG
TATCCTCGGTTATCTCAGCTTTTTTTGTTGTTCGTCGTCTCAAATACAAA
ATGACCAGCAATAAAGCAATCAAAGCCAACGCAACTAAAATGATCAGAAT
GATGTAACCAATTTTGATTTTTGTCTCTTCTCCCAAGATCTCACAGTTTT
GTCCTGAATATCCACCGACACACAAACATTGATATTTATCTGAAGTTTCA
TCCAAAGGTTGGCAAGTTCCATTGTTTTGGCAAGGATTGTTGAAATAACA
AGCTTTTTCAATCCCACATTTCTCTCCAAGAAATCCTGAACTGCAGTTGC
ACATAAAAGTGTCTACAATTTCCAAACATGTTCCATTGTTTTGGCAAGGA
TTGTTGAAATAACAAGGTTTTTCAATCTCACATTTCTCTCCAAGAAATCC
TGAACTGCAGTTGCACATAAAAGTGTCTACAATTTTCAAACATGTTCCAT
TATTTTGGCAAGGATTATCCAGACATGCGTTTTCGAACTGACAAAATCTT
CCCTGATTCTTCTCGGAGCACACGCAAGTATAATCCAGCTTATCGACAAC
TTTACATGTTGAATTATTCTGACATTCATTCAAAGAACAAGCAGTGCATT
TCAGTTTGTTGGTCCGGTAAAGGTCTTCGTAAATATCATCATCCTTCAAG
TCTGCTGGTGTTTTACAATTCCCAAAAATTAAAAATTTATCATTACCATT
AAAAAAGTATTGCATGGTGTTAAATAAAGCACAGTCACAATGCAATGGGT
TCTGCTCAAGATAAAGCTCATTAGGTTTCAAAGCAAACCAATTTTTTTGA
AGCGTTGTCAAACTGTTGTTGGTAAGATCTACGGATAGAGAATTGAAAGT
CTTTGGTGGAAAGTCTGTAAATTGATTACTTTTCATCTTCAGAATCACTA
ACCGTTGGTTCCGGAACACACCTTCAGGGAGGGAGGTCAGCTTATTATAA
CTGAGCCATAACCTTTCTAACTTGGTAGCCGCTGCAAACGCATCTCTTTC
AATTTTCCCAAGAGCATTTCCATCAAAACTAATCCACAGCAGGTTCTCGG
CACCATTTAGTGTACCGTTTTTCAACATTTCAATCTGATTATTCTCTGCA
AAGACCTTTTGGAGGTTTTGTAGGTTCTCAAAAATGTTTGGTTCAATCTC
TGTAAGAGTGTTGCTGAAAATGTCAAGGATCTTGATATTTTGGTAGCCGA
GAAAATCATCCCTGCTAATCTTGCTGATTTTGTTTTGATCAATCGAAAAA
CGGTGGACAGATGGTATGTAGTCAGATACATTTGCTGGTGGCTTTGTCAG
AAGATTTTGTCCAAGTTCAATTATCTCCAACTTGCTGAATTTGGTGAAAG
CTTCAGCTGGGAAATTAGTAATCAAATTGACTTTCAGTATTAACTCTTCT
GCTGTAAGTGGGTCACCAGTATGGGCAATTTCAAGNNNNGCTCCAGCTGA
TGACGTCATCAGAGAGAAACAGATCAATATTTCTAGGAGATGACATGATA
AATTGGGAAACAGATATCTGTTTCCAAAAAGATGATATTGCATTGGAAAC
AGATTGAACTTTCTGATGGAAAACAGATATCAATCACAAAGAGCAAGGGA
AACAGATGAAAATTTCCAGGAGGGGAAACAGATATCCTATTCCTTATAAT
AAGCTTGGGAGAACAGATCAAAATTTTACTTCTGAAAATTGTGGAAACAG
ACCAAATTTTCTAGGGAAGATACTTTTAGATTAAAAATTTAGGTTTGGAG
GAGAAACAGATTTATTTCTAGGAATAAGATATTTGGAACTTCAGAACTTT
TGGCCAACAGATCAAATTTCCAGGAAGGCTATGCCTGGGAAACAGATGTT
TAAAAAAAGGTCCTCGCTGGATGCTTTCGTTCATTTTCAGTGAATATTTT
CAAAATAAACCCCAAGCCTCTGATATTAATATTAAAGTTGATAATATACA
AATAACCAAATATGTAAAAATAATAACGAAATTAGTTTCAAAAATGAAAG
ATACATTACCCTTAAGATATTCCCTAATTTTTGTATGTATTACGTTTATA
TTACGTTCCCTAAAGAATGGGTCAATAAAAAAACACTTTCTTTATCCAGA
TGAGGTATGTAAAAGGCTTTATGCAATCTCATTGAAAAAAAAAAGCCATT
ATCAAAGAGCTTTCGAAACTATAATCATGAATATTGTTCCGAAATTAGTG
GAAATAATAGGCAACTCAAATTCTAATGCCTTCAATAATAGTAACCAATA
TAAGAAATAAAATCCAAACCAATGTTAATTAAAAAATAAATGATAAAAAA
TGCTTTTTGTTACTTTATTTTTCACTTTTTGTTTATATTTGATGCATGTA
AAAATCTATGGCAGTGAGTTTTTTGTTCATTAAATCACCTCGATCAAGTA
TTTTGTGTAGATTTCAAAGGAGTATCCTCGGTTATCTCAGCTTTTTTTGT
TGTTCGTCGTCTCAAATACAAAATGACCAGCAATAAAGCAATCAAAGCCA
ACGCAACTAAAATGATCAGAATGATGTAACCAATTTTGATTTTTGTCTCT
TCTCCCAAGATCTCACAGTTTTGTCCTGAATATCCACCGACACACAAACA
TTGATATTTATCTGAAGTTTCATCCAAAGGTTGGCAAGTTCCATTGTTTT
GGCAAGGATTGTTGAAATAACAAGCTTTTTCAATTTCACATTTCTCTCCA
AGAAATCCTGAACTGCAGTTGCACATAAAAGTGTCTACAATTCTCAAACA
TGTTCCATTGTTTTGGCAAGGATTGTTGAAATAACAAGGTTTTTCAATCT
CACATTTCTCTCCAAGAAATCCTGAACTGCAGTTGCACATAAAGGTGTCT
ACAATTTTCAAACATGTTCCATTATGTTGACAAGGATTATCCAGACATGC
GTTTTCGAACTGACAAAATCTTCCCTGATTCTTCTCGGAGCACACGCAAG
TATAATCCAGCTTATCGACAACTTTACATGTTGAATTATTCTGACATTCA
TTCAAAGAACAAGCAGTGCATTTCAGTTTGTTGGTCCGGTAAAGGTCTTC
GTAAATATCATCATCCTTCAACTCTGCTGGTGTTTTACAATTCCCAAAAA
TTAAAAATTTATCATTACCATTAAAAAAGTATTGCATGGTGTTATATAAA
GCACAGTCACAATGCAATGGGTTCTGCTCAAGATAAAGCTCATTAGGTTT
CAAAGCAAACCAATTTTTTTGAAGCGTTGTCAAACTGTTGTTGGTAAGAT
CTACGGATAGAGAATTGAAAGTCTTTGGTGGAAAGTCTGTAAATTGATTA
CTTTTCATCTTCAGAATCACTAACCGTTGGTTCCGGAACACACCTTCAGG
GAGGGAGGTCAGCTTATTATAACTGAGCCATAACCTTTCTAACTTGGTAG
CCGCTGCAAACGCATCTCTTTCAATTTTCCCAAGAGCATTTCCATCAAAA
CTAATCCACAGCAGGTTCTCGGCACCATTTAGTGTACCGTTTTTCAACAT
TTCAATCTGATTATTCTCTGCAAAGACCTTTTGGAGGTTTTGTAGGTTCT
CAAAAATGTTTGGTTCAATCTCTGTAAGAGTGTTGCTGAAAATGTCAAGG
ATCTTGATATTTTGGTAGCCGAGAAAATCATTCCTGCTAATCTTGCTGAT
TTNGATCTTGATATTTTGGTAGCCGAGAAAATCATCCCTGCTAATCTTGC
TGATTTTGTTTTGATCAATCGAAAAACGGTGGACAGATGGTATGTAGTCA
GATACATTTGCTGGTGGCTTTGTCAGAAGATTTTGTCCAAGTTCAATAAT
CTCCAACTTGCTGAATTTGGTGAAAGCTTCAGCTGGGAAATCAGTAATCA
AATTGACTTTCAGTATTAACTCTTCTGCTGTAAGTGGGTCACCAGTACGG
GCAATTTCAAGTAACACAGTATCATTGATGTTTTGTCCTCCGCAAGTCCA
TTTCAATCGTGAACATTGGCATTGTTCAGGACATGTTTGCGCTTGTGAAT
AAATGATGAAGACCACAAGCAAAATGAATAGAAATCCCTTCATTGTTACT
GCCTGGTACGCTCCTCATTGGCCGGATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004547-exon-sc0000045-1575043694:323045..324587 | TCONS_00004547-exon-sc0000045-1575043694:323045..324587 | Clytia hemisphaerica | exon |
TCONS_00004547-exon-sc0000045-1575043694:320623..323014 | TCONS_00004547-exon-sc0000045-1575043694:320623..323014 | Clytia hemisphaerica | exon |
TCONS_00004547-exon-sc0000045-1575043694:318659..320592 | TCONS_00004547-exon-sc0000045-1575043694:318659..320592 | Clytia hemisphaerica | exon |
TCONS_00004547-exon-sc0000045-1510915933:323045..324587 | TCONS_00004547-exon-sc0000045-1510915933:323045..324587 | Clytia hemisphaerica | exon |
TCONS_00004547-exon-sc0000045-1510915933:320623..323014 | TCONS_00004547-exon-sc0000045-1510915933:320623..323014 | Clytia hemisphaerica | exon |
TCONS_00004547-exon-sc0000045-1510915933:318659..320592 | TCONS_00004547-exon-sc0000045-1510915933:318659..320592 | Clytia hemisphaerica | exon |
TCONS_00004547-exon-sc0000045-1491911889:323045..324587 | TCONS_00004547-exon-sc0000045-1491911889:323045..324587 | Clytia hemisphaerica | exon |
TCONS_00004547-exon-sc0000045-1491911889:320623..323014 | TCONS_00004547-exon-sc0000045-1491911889:320623..323014 | Clytia hemisphaerica | exon |
TCONS_00004547-exon-sc0000045-1491911889:318659..320592 | TCONS_00004547-exon-sc0000045-1491911889:318659..320592 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000045 | supercontig | sc0000045:318659..324587 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005509 | calcium ion binding |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005509 |
calcium ion binding |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00004547 vs. Swiss-Prot (Human)
Match: SLIT3 (Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3) HSP 1 Score: 142.124 bits (357), Expect = 1.778e-33 Identity = 104/344 (30.23%), Postives = 156/344 (45.35%), Query Frame = -1
Query: 4352 QNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRNQR-LVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALYNTMQYFFNGNDKFLIFGNCKTPAELKDDDIYEDLYRTNK----------LKCTACSLNECQNNSTCKVVDKLDYTCVCSEKNQGRFCQFE-NACLDNPCQHNGTCL---KIVDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLRIVDTFMCNCSSGFLGEKCE--IEKACYFNNPCQNNGTCQPLDETSDKYQCLCVGGYSGQNCE 5332
+++ +++ E N + + L+ +L I N++ + F+ + L L LSYN+L +P F R L +L + N + P +FN DLT+ S L L NPLHCDC+L ++ G + I C +P + D + + KC AC + C+NN TC Y C C +G+ C N C+ NPCQH GTC D F C+C GF G++CEI +N C+NN TC+ ++ ++C C + GE C+ I+ N CQ+ C PLD+ + C CV GYSG+ CE
Sbjct: 752 KDVTELYLEGNHLTAVPR-ELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFN----DLTSLS--------------HLALGTNPLHCDCSLRWLSEWVKAGYKEPGI-ARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDK---GFSCECVPGYSGKLCE 1072 HSP 2 Score: 138.272 bits (347), Expect = 2.660e-32 Identity = 103/344 (29.94%), Postives = 156/344 (45.35%), Query Frame = -2
Query: 1960 QNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRNQR-LVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALFNTMQYFFNGNDKFLIFGNCKTPADLKDDDIYEDLYRTNK----------LKCTACSLNECQNNSTCKVVDKLDYTCVCSEKNQGRFCQFE-NACLDNPCQNNGTCL---KIVDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLEIVDTFMCNCSSGFLGEKCG--IEKACYFNNPCQNNGTCQPLDETSDKYQCLCVGGYSGQNCE 2940
+++ +++ E N + + L+ +L I N++ + F+ + L L LSYN+L +P F R L +L + N + P +FN DLT+ S L L NPLHCDC+L ++ G + I C +P + D + + KC AC + C+NN TC Y C C +G+ C N C+ NPCQ+ GTC D F C+C GF G++CEI +N C+NN TC++ ++ ++C C + GE C I+ N CQ+ C PLD+ + C CV GYSG+ CE
Sbjct: 752 KDVTELYLEGNHLTAVPR-ELSALRHLTLIDLSNNSISMLTNYTFSNMSHLSTLILSYNRLRCIPVHAFNGLRSLRVLTLHGNDISSVPEGSFN----DLTSLS--------------HLALGTNPLHCDCSLRWLSEWVKAGYKEPGI-ARCSSPEPMADRLLLTTPTHRFQCKGPVDINIVAKCNACLSSPCKNNGTCTQDPVELYRCACPYSYKGKDCTVPINTCIQNPCQHGGTCHLSDSHKDGFSCSCPLGFEGQRCEINPDDCEDNDCENNATCVDGINNYVCICPPNYTGELCDEVIDHCVPELNLCQHEAKCIPLDK---GFSCECVPGYSGKLCE 1072
The following BLAST results are available for this feature:
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