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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004527 ID=TCONS_00004527|Name=TCONS_00004527|organism=Clytia hemisphaerica|type=transcript|length=1059bp
TTCCTAATCACGACGATGTCAGGTGCCAGGTAGTCCAAACGAAACTTCGG
ATGATTGGTGACGTTTTAGAGCTATCAAAGTGATCTAGACTTGCTGGTGC
AACCCTTTTGGTGTTCGCCAATAAACAAGATTTGCCAGGAGCTTTGAAAG
CTGATGAGATTGCAAAAGTATTAGAACTTGATGAAATCAAAACACATCAT
TGGCAAATTCTTGGTTGCAGTGCTGTGACTGGTGAGAAACTTTTAGATGG
agttgattggttgattggAGATATAGCTTCCCGGATATTTACCATGGATT
GAGGAGATTCAAATAACCAAAGGAGGTTAGGCGTGGTTTTGGAGACTGTT
TGCTTACATCTCCGACTGAAATTCGCCTTTGAATTAACTTGATtaaattt
cgaaggaaaagtAACATTGTTgttaaataaaaagtgaaaaaaaaatgaaa
tcattgGATGCGTGTCTTCGTAGACGTGTATTGGAAAAGCAATAACAGTA
TAATCTATTGATCACACATAATTAttttaatgatgaaatttaTTCAATGC
AATATTTCCAGTAATAAATCCATACAGATAGAactatttaaaattttatt
acatcTAGATAGGGAATATTTATTTTACtaaatttataatttgtaaataa
tcaaaatctatcaaaaaacaaaacttgGATAATGTATGGTTctcagagaa
gaaaaaaattctgctTCATTCTTTCCAGTCCTCTTTGATGATATCAGCAG
CTTTTTCAGCGATCATAATTGTAGGTGCATTAGTATTTCCACTGACAATG
GTTGGCATGATTGATGCATCGATAACACGTAATCCTTTGATACCATAAAC
TTTCAATGTTGAATCTACAACTGCTTGATCATCAGTATGTGGTCCCATCT
TGCACGTACCCACTGGGTGGTAAGTTGTTGTAGCTCCTCTCTTAGCAATG
CATCCAAGGTAGTCATCAGAATCTGAAAACAGATTTATTGTTATTACTGT
AAGATTCAAATACTTATTCTTAAACTCTTTAATTTGTTGGTTTGGTACAT
TTAGAAAAG Run BLAST on NCBI transcript from alignment at sc0000045:745086..754020+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004527 ID=TCONS_00004527|Name=TCONS_00004527|organism=Clytia hemisphaerica|type=transcript|length=8935bp|location=Sequence derived from alignment at sc0000045:745086..754020+ (Clytia hemisphaerica)
TTCCTAATCACGACGATGTCAGGTGCCAGGTAGTCCAAACGAAACTTCGG
ATGATTGGTGACGTTTTAGAGCTATCAAAGTGATCTGTAAGGTTGATTTT
GTTGGGGAGGGTCTAActtaattttgataatattttacaTTTTGCTTTGT
GTATGGTTTTGGACGGACAATAATAGTCTGATAGATAGTTGTTAGTCTGT
TAGGGAGAATGtaacggtcttttgaataactagtTACTCCAGTATCCCTC
AACCAGTACAAACAAGATGAGTTACTGTCAACCTTGGGATGATTGCTCAA
ATCTTGCCTTGGCCTGCCTCCTTGCACCTTGGGTAGCTTAAAATTATTAA
CCTTGGGATGGTTAATTTCTGGCAGTCTAGCAAAAAGTTAattcttcttt
caaaataaaactatAATAGACCAGTGTCCGagattcagaaaaggccttaa
aaatggttttcgtagggcaccccttagatcagggcaaatttttggatatt
atgctccttatattatatatatataaggtgtagaatacacctttcccgta
tttcgaaaaaaatatgcgCTCACATATTTTTTGCTCTCCATCGTTTCTTG
GacgggaggtaaacaaacctaTTTTTGCTGGCAATTGCTTAGGAAAAGgt
ggttttttggacttttctcacagttagtcacactaggaaatttagctttc
agaaaaaacaacatctagaccagtcaggcacatcctggcaaatgaacggg
ctGAGCATTTGCAttgggtattcgtcacccagtgtaaatgagatgacgtc
tcaggctaaaagcgtgaaaatgaataaaaatgaacttcaaactgaaaaag
ggaaaaaaggaagaaaactgggaactttattttttcgttaaaagtttctt
caatcttcgaagacaaaattgacccatggaaaaaaaatttcatcgatgca
gttctttgaaatgaagcaaaatatttccaacccggttcaattaaactggg
tattcggcgctattacgtcactttcgttttcgaccccattcatttgccaa
tggtcgcaagtgaaaaataccccgttcatttgccaggatatGCCTGACTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTGGTCAATTTGAAggtgctg
attcggaatttgaatgttaccaagcttgaaaacccgcagtttttacgtaa
tttgcgattttttgcgtttttagggaaaattcatgattttggagggggtc
ttcaaaatcaaaaaagacctataccacgtgatagagctcttcaaactgag
caaaaaaatgtattatatcaaagtctcaacttttcttaATCAAANNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNacttttcttaatcaaaagtta
tgggcgtttttgtggtaaaaaagtgctataattttgcataaattatgcag
attgtggggaaattccctgttttcaatcaattttttaccttaaaatcgtc
tataacttttgatctaaaaaagttgagactttgatataatacattttttg
ctcagtttgaagagctctatcacgtggtataggtcttttttgattttcaa
gaccccccaaaaatgacaaattttcagggcttacaattttgcctaaaaac
gcaaaaaatcgcaaattacgcaaaaactgcgggttttcaagcttggtaac
attcaaattccgaatcagcaccctcaaaNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNccctcaaattgaccaagaaagatat
caaaagtttattcaccgacattttgaattttttatttatttttgaaacaa
taacaatccactggccacggcctaatcagtcatctacaggatgtatttca
acaacaaggatgagagctacctgaatcaagttcaagatcccaagacaatc
aattaaaacttgaaaacttaaaatgatacaaaatgcgattgcgaacgtgc
agcagcgccaaatatcaaccaaccaaattttgccattcaattcccaagac
agCACTtagatttttaaggccttgtttatacgttacagtaaagtaaaaat
aattccgcacatgtaaatgggtcattgtttgaggtccgacAAAATatccg
ggaaacagcctatccggtggtgcgcagatctaggtgggttccgcctcccc
cgtagatctttttcttgggaagttgatcttcaaattagtttttaaggttg
gcttggctcaaatttttgCATCTATGGCTCAAATtttaggcaatttctca
aagtttttgaaaatgttaatttcattaaaaagcgccgggttattttttca
tgaatccctttagaagttttgcagcgcatttttttgcttgagagtcaagt
aaaggATATaacgctttcgcagcattaatttttgagaagcattttggcgg
gacgctagtgtgactaactgtctcaACTTACATCGTacagaattttttca
aattttggtatGTTTCTACTATCCTTGATACAATaccagacagtgtcaat
cgaacaacttcgaacaaaattgcaatcgaaccaatcgaaggTAATCAAAc
gtgatcgaataattgcgatttgattgtcgaacgtaatcgaatctcaatcg
aacggccgattcatgggtaatattcgattgtgttcgacgCGTTCAAGTaa
ggttcgattggttcgattggttcgattgataggtgactatgttcgattgg
ttcgattgattgtcaattacattggattttaaaatcttcaatttcgttcg
attacgattatgttcgatgagttagATTGGGATCAAATTAAATTGGAtga
ctctgttagagctttttagcgtggctGGGCGGCCGAGTGCTTGAGGTGcc
ataccaaagcgaataaaatctaatacaattgaatcaatcaaacgtaatcg
aatgcGATCGAACGTAATGGAATacaatcaaacataatcgaagCAATTGA
ACAGCAAATGCAATTGAACAGCAAATGCAATTGAACAGCAAATGCAATTG
AACAGCAAATGcaattatttgattgtgttcaattgtgttcgattgattcg
gtgttcaattcgttcgattgacaccatcTGGACAATACTTCCCtccaaat
tctttttcaaacaaacttgGGCATCGAAAGATAGAAGACAAAAACTGCTT
TCCCCTAAGCAAACGCAGGTAAAATCGAGTTTGTTTACCTCCCGTGAATT
CCCGTGTATTTTTATCACAACCGTGGAGAACAAGTTTTTTTCCGGGAAAt
ctgaattacgggaaaggtgtattgacaaaaaaaaattgcccctcgaatct
cctgcagttttcgagtgaatcaatttttggagttttttcgaagtctgaaa
atcaaatatctgaggctaccaagggattcagcgtgaaaattAGATaagga
aaatgggtttttttgtttatttcacacaaaatggggttatttgttaagtt
tcgaccacctagtgccgagaaatggcatttttaaggcaaaaaatcaatgt
ttttggcgttttctgatgacgtcagcatttttctgggagcattttcagaa
aaaatcattcctgCAGCTTGATAGCcatgaattagtagtatccgaaaatg
gtatggtttgttaactttcgatcttgacatattccatttttaaggtgagt
aaatatgctgaaaaactgctgactcagcaaaaaatatcgataattttcat
tatctaaaccaaaatatctcaagatctagacatcgaaagttaacaaacca
taccattttcggATACTACTAATGCAGGGCTATCCACAATCGtccactaa
atatttgagacaaaggggagttcccggtgtaattttgaacaccacaattg
atttagttccttaaactacagttggaaagtagagttttaactctgagttt
taacatgagacttaggaccttaggatcttaggatttaagctcaaatttgc
tcgaatgaggcagaatgaggcttggaatatagcctagaagccaccaaacc
cctctaaaatcgaaatattcaatggaagaaagcggaagtgctaaaatagc
aattctcgcccgaactttaaattctgaaaaacgttaaagtacactaaaat
ctcaatacaTTTCGAGAGAGATTGcagctgtgggaatgattttttctgaa
aatgctcccacaaaaatgctgacgtaatcagaaaacgccaaaaacatcga
tttttcaccttaaaaatgccatttctcggcaccaggtggctgaaacttaa
caaatgaccccattttctttatctacttttcacgctgaatccgttggtag
cttcagatatttgatttccaaacttcgaaaaaaccgttagtaaagggggg
acccttgataagttctatcaattaactaaaatttgattcactcgaaaact
gcaggagattcgaagggcaaattttttttgtcaattctacaccctctTAG
GAGAATACTATCAAAaattgccctgatctaaggggtgccctacgaagtga
cacaattcattacctcggccgctggtctataatttgtttacctttattct
tgcagcttcccagcattcaagctctcaaacatcataccgtgagattgggt
aacttgcatcagtggaggctaacatgcatagccctcaaatgaaagacctg
gctggtcattaaaatacaaagttaaatcaaaacaaaaagggtAGAGTAAA
GATGCGTagactgatgcaagttacccaatctcacggtatatttGACTATT
TTTATCCCCTTCTTTGTATTCTTGAGAAACAATCTttgtatctctaaaac
agcGCTCTCTTCTTGGAGCACAGattgtcaatctatatccacttgcacCA
TCAGCATCCTTTTATTGaccttgaaaaaatattttgttgtaaATTTGTGT
ACACAACTTATATTATGTGATTACgtcattatttttataatttaagTGTC
ACTTAATAAGGGGGGATACCTGTTTGAGGGCACAAAAGAAaaggtaattt
tgaatttaagggGAGAGTAATTCATGTGAATCCAAATCTCTTTTTACTCT
TTGTAATACCAAAAGCTGAAGTACTTTGTAATAAAATATAGATTTAAATG
ACTTCGTAAAAAGCCCTGTAAATTGTAGAGAGTTAAAGATTAAGATCCAA
AGTTTCAGACttttaaaagtaaacaaaatgTACTGGGTTCTGTCCTAAAT
ACTTAAACATGGGAATTAATGAATATCTTACTGTCTTAATCATGATCTGA
TTATATTAACATTGAGCAAGTCATAACCCTgctttttgtaatttccctga
tacaaacaaagaaaaaactttacttATGgctgaaagaataaaaaaatttt
caaccaaccaaattttaaaatgtagtgatcaaatgttttgattggccatg
gaaataaaaatagagatcaaatgaaaatcaaaaactcaTTACCCCAAAAA
AGGTTTGAACGTCTTCCCTAATTGATTTTCCAGGCATGTCAGACAGCTTC
ACCTACATTATTATTACtggttttgaaattgttttgttttggatgGAAAT
TTCCTGTCAGGTGctattacaaagtgtgtcagcTTTTTGTATTACAAAGC
GTGTTGATTTTTATTACAATTATTAAAGTGCTCTATCTGATTTGCACGCC
AGGGCCATGTATGTAAGAAATTCCATGTTCCAATCTAATATTGAAGACaa
atcatagtcattataaaaacacttgtctggaaggcttttgtctcttttta
ttgttaaaagatggagcttatgtaccaaaatcgatttattttgcaaactt
tttgatcatgtgattaaaaatagaccaatcccaagaggagattttggtaa
cgtgatcaaaaagtttgcaaatcgcaacttgtgttttgtttgtaacaaaa
gaaaattgaacaaaaagctaaaacaatacattgccagactggggtttttt
ataatgactaaaGACAAATCACAATCTCGAAAGCAAAAGAATTAAGGGGt
actttagaaaagaaaaaggaagatttAAGGGGGGGGTTAAGAAATAAGGG
CGCAGTACAAATGGAATTCCAAATTTAGGGGGGAGAAATGGGTAAGGGGT
AATTTGCTGTTTAAGGTGGGACTGAAAAACATGGATGAAACCATGCCCAG
GCGTAATTCTGTATGCCATTTGGTGTGCCATTTGGGGTGCCATTTTGGTA
TGCCATTTTGGGGCGCCAACCTATGTCGTAACCCCAAAATGCCAGGACTC
TGCCATGCACTTGTTGAAAtttattgtttattcttgctctATATTTGGCA
AACAtggtttttgaaacttttaggTATATACTGTATATCAGGCAAATTGA
AACAATTATTCTTGCCTGTGTCAAAGTTGTGCTCACAACACAATTCCAGG
GGGTGCAGGGATACTTGGTATATTCATCCCGAGCATCCAAACCCTATACT
AAAGAGGGTGATTTTTTGCTGACAAAGAGagactaaaattgctttaaagg
TGAGCCTTaaaagagatttaaaaaaattcaattattgAGAAAGAATCTTT
CTTTTTGACCTTGGTTGTTTTTGTAATGACCCCTGGATCACAACTGTTGA
GTGTCGCCTGAAATATTTCTCAATTAGGTGGCATCTAAAGGCGAATGTCT
AGATCTCTatggggggggtcggtactaaaatctcagacatcatgacattt
agtgacgtggtggtactgcaaaaaagctcaaaaatagttttagtaccatg
tgtactaaaataccaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNaaaataccaaaaagggtggtcccttaaagaaatat
ttgaaaaatcttagtattttgttctaaaatcagccaaaatggagcatttt
tttaacaattttagtaaaaaatttgatttttttttcaggaattttcgaaa
aaatcttcagaaatctttcagaattttccaattttttaaatattttttag
aaatatttttatgtacagtttagcacagtttagtaataaaattacattat
tttgcagattgatgcgctaaattcgactaggtttgtaacaatgaccccat
tttggtaaatttaaacccgtaaaagggcaaaaaatgggtggtatctatgt
tNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Ntgctcaaaataattttagtacatgtgtactaaaataacattttcgaaaa
ataggtggtggtatgcaagaaattcttgaaaatccttttagtactcatgt
atgtctgacattttagtactgacccccccccctggtaaATGACCATTTAA
CTATCTTACTAAAGCAACGCGAGTCCATAAAACAAACAAAGCAAGATTAT
AATGATTTTTCTCTTAATTCTATTTAGGGGGACACAATATGttcatattc
atgatatgcaccactgcaatgtcttctgacatcaTATCacagacccaata
gctgattggttgtaagtgacgtaaaatcagtcaatacgtcactttcaatc
aatcagctgtttggtccgtggaagacattgcaatggtacaTATCATAAAT
TACTACATTAAAGGTTTTCAAAGGAAGTGGAGTGTATTCAATTCTCACTT
TTGCATTTTTAGAGACTTGCTGGTGCAACCCTTTTGGTGTTCGCCAATAA
ACAAGATTTGCCAGGAGCTTTGAAAGCTGATGAGATTGCAAAAGTATTAG
AACTTGATGAAATCAAAACACATCATTGGCAAATTCTTGGTTGCAGTGCT
GTGACTGGTGAGAAACTTTTAGATGGagttgattggttgattggAGATAT
AGCTTCCCGGATATTTACCATGGATTGAGGAGATTCAAATAACCAAAGGA
GGTTAGGCGTGGTTTTGGAGACTGTTTGCTTACATCTCCGACTGAAATTC
GCCTTTGAATTAACTTGATtaaatttcgaaggaaaagtAACATTGTTgtt
aaataaaaagtgaaaaaaaaatgaaatcattgGATGCGTGTCTTCGTAGA
CGTGTATTGGAAAAGCAATAACAGTATAATCTATTGATCACACATAATTA
ttttaatgatgaaatttaTTCAATGCAATATTTCCAGTAATAAATCCATA
CAGATAGAactatttaaaattttattacatcTAGATAGGGAATATTTATT
TTACtaaatttataatttgtaaataatcaaaatctatcaaaaaacaaaac
ttgGATAATGTATGGTTctcagagaagaaaaaaattctgctTCATTCTTT
CCAGTCCTCTTTGATGATATCAGCAGCTTTTTCAGCGATCATAATTGTAG
GTGCATTAGTATTTCCACTGACAATGGTTGGCATGATTGATGCATCGATA
ACACGTAATCCTTTGATACCATAAACTTTCAATGTTGAATCTACAACTGC
TTGATCATCAGTATGTGGTCCCATCTTGCACGTACCCACTGGGTGGTAAG
TTGTTGTAGCTCCTCTCTTAGCAATGCATCCAAGGTAGTCATCAGAATCT
GAAAACAGATTTATTGTTATTACTGTAAGATTCAAATACTTATTCTTAAA
CTCTTTAATTTGTTGGTTTGGTACATTTAGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004527-exon-sc0000045-1491911889:745086..745171 | TCONS_00004527-exon-sc0000045-1491911889:745086..745171 | Clytia hemisphaerica | exon |
| TCONS_00004527-exon-sc0000045-1510915933:745086..745171 | TCONS_00004527-exon-sc0000045-1510915933:745086..745171 | Clytia hemisphaerica | exon |
| TCONS_00004527-exon-sc0000045-1575043694:745086..745171 | TCONS_00004527-exon-sc0000045-1575043694:745086..745171 | Clytia hemisphaerica | exon |
| TCONS_00004527-exon-sc0000045-1491911889:753048..754020 | TCONS_00004527-exon-sc0000045-1491911889:753048..754020 | Clytia hemisphaerica | exon |
| TCONS_00004527-exon-sc0000045-1510915933:753048..754020 | TCONS_00004527-exon-sc0000045-1510915933:753048..754020 | Clytia hemisphaerica | exon |
| TCONS_00004527-exon-sc0000045-1575043694:753048..754020 | TCONS_00004527-exon-sc0000045-1575043694:753048..754020 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:745086..754020 + |
Blast
BLAST of TCONS_00004527 vs. Swiss-Prot (Human)
Match: ARL2 (ADP-ribosylation factor-like protein 2 OS=Homo sapiens GN=ARL2 PE=1 SV=4) HSP 1 Score: 112.079 bits (279), Expect = 5.603e-29 Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 3
Query: 87 RLAGATLLVFANKQDLPGALKADEIAKVLELDEIKTHHWQILGCSAVTGEKLLDGVDWLIGDIASRIFTMD 299
RLAGATLL+FANKQDLPGAL ++ I +VLELD I++HHW I GCSAVTGE LL G+DWL+ DI+SRIFT D
Sbjct: 114 RLAGATLLIFANKQDLPGALSSNAIREVLELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSRIFTAD 184
The following BLAST results are available for this feature:
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