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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004526 ID=TCONS_00004526|Name=TCONS_00004526|organism=Clytia hemisphaerica|type=transcript|length=2254bp
AGCCTTTGGGAAATCACTGTAACAGCTCCTGGTACCATATTGAATTCGAT
TTGAATTATGTTCATCAAGATCGATTCCTTTGAACATGGTAGGGATTTTG
AGAACATCATTCATGAAAACAAGGCAGTCTTTGACACCAGCGCTTTGAAA
GAATGCACCGATCAAAGCTTCCATACAGTCAGCCAAAGACTTGTCTTGCA
CCACTTGGTATGAATAGGGACTTGAGAACAGTTCTTTTTCAGGTGTGTCT
TCCTCCATTGGTTCGTCAGGTATGGATCTCTTGAATGCAGGCGGTAGCCA
GACGGTCAGTGGGTTTTTGTTGTCACTTCCACGATTCGTATCACCAAAAt
gtgaattgttcacataagAAGCTGCATTCAATTGGACGGCAATGTTGCGG
AGATTCTTGTTACTGATCTGTTGTTTCCTGATCAAAGTCAACCGACCTTC
ATCATAAGTTGGGTGCTTGAAAAANTCCTTGATTTGACGAAGATTCCCGA
CCTCTTCACTATCTCCTCTGAGTCTTGGATCACGAACAGCCGAAGCAGCC
TTTGGGAAATCACTGTAACAGCTCCTGGTACCATATTGAATTCGATTTGA
ATTATGTTCATCAGGATGGATTCCTTTGAACATGGTAGGGATTTTGAGAA
CATCGTTCATGAAAACAAGGCAATCTTTGACACCAGCGCTTTGAAAGAAT
GCACCGATCAAAGCTTCCATACAGTCAGCCAAAGACTTGTCTTGCACAAC
TTGGTATGAATAAGGACTTGAGAACGGTAGTTCTTTTTCAGGTGTGTCTT
CCTCCATTGGTTCGTCAGGTATGGATCTCTTGAATGCAGGTGGTAGCCAG
ACGGTCAGTGGGTTTTTGTTGTCACTTCCACGATTCGTATCACCAAAAtg
tgaattgttcacataagAAGCTGCATTCAATTGGACGGCAATGTTGCGGA
GATTCTTGTTACTGATCTGTTGTTTCCTGATCAAAGTCAACCGACCTTCA
TCATAAGTTGGGTGcttgaaaaacaagaaaatcgACACAGCTTGTTTCAA
GAATGCATCACCGAGCATCTCCAGACGTTCTAAGTTGACATCAAACAAAG
CTTGCCTTGTTGTCAATGCTTCGAAGATTTCAGACGGTGCTGGAGATTTT
GGAAATCTTGGATGCAATAATAATCTCATCTTCTGTATCTCTGAAGCACT
TGATCCCTGGTTCATCTCCATTTCACCTGCGTCTGGTAAATCCATATAGG
ATAGAATCTTGTTCCGGAATTCATCAGCATTCAATCCACATTCGAATCGG
TACAGAAAGTAAGGAAACAGGATAGCTTGCATATGAAGTTGAGAAGACAA
GGAGCTAACTACTTGACATAGCTCTGGAACCAACTCTTCTTTGTGTCGAC
CACTTTCTTTCTTGCTGTCTCTCATGGTTTCTACTTCATGGTAATTGACA
GATCTGGAGACTGGGACGACTTGCATTAGTAATGAATTGACATCGACAGG
ACGGTTGTATCTTTTCTGGTAATAATGTGCAAAAGTTTTGTTTCCTTCCA
TAAAGTCACCAGCTATTTTGGTTGACGGCTCAACGACATAGTAAGGACGT
CTATTCATTTTCTCATCGTCTAGGTAAGTCTTCCTAATAACCTGTTGTTG
GTTAGGATCAGGAATTTGATTGAGATTCAGTGACTTTGAGACTGTATCCA
TCTGCATGAAGTCGATTGGTTGCGACTTGAATCTAAAGACATCACGTTGG
ATTTGAGACATTGCTTTTGGTGTTAGTATCACAACGAAAGCTTTGGAGAT
TTCAAAATCTGTATCATCTCTGTAAAGCGTCAAATCTTCGGGAATGTATT
GCTTGTAGAAGTCTGTAGACATATACTGACTGAATCTTTCAATAGATTCT
TGATGTTTGGTGGAGAGCTGAAATGATGGTGATTCAAGTTTTCTCAACGT
GACAGTTATTTCGCCAGATCGTGTGTACAACTTCACTGGTTGAAACTATT
AAAAACGAataaaagtaagtaagtctgcgaccgcagtcggaggcgacccg
aaggctcctctttcgatagctatatacccgaaggtaggggagggcgccac
tctttctccctggattttcCACTTCCACTTTccatccttctcttaattgc
tgagcatcaagcagagaggcatcaagtaccattttgagaatctttggtat
gacccagctgggggttgaacccacaaccttgcaaaccgtagccggatgtt
ctac Run BLAST on NCBI transcript from alignment at sc0000045:707656..709909+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004526 ID=TCONS_00004526|Name=TCONS_00004526|organism=Clytia hemisphaerica|type=transcript|length=2254bp|location=Sequence derived from alignment at sc0000045:707656..709909+ (Clytia hemisphaerica)
AGCCTTTGGGAAATCACTGTAACAGCTCCTGGTACCATATTGAATTCGAT
TTGAATTATGTTCATCAAGATCGATTCCTTTGAACATGGTAGGGATTTTG
AGAACATCATTCATGAAAACAAGGCAGTCTTTGACACCAGCGCTTTGAAA
GAATGCACCGATCAAAGCTTCCATACAGTCAGCCAAAGACTTGTCTTGCA
CCACTTGGTATGAATAGGGACTTGAGAACAGTTCTTTTTCAGGTGTGTCT
TCCTCCATTGGTTCGTCAGGTATGGATCTCTTGAATGCAGGCGGTAGCCA
GACGGTCAGTGGGTTTTTGTTGTCACTTCCACGATTCGTATCACCAAAAt
gtgaattgttcacataagAAGCTGCATTCAATTGGACGGCAATGTTGCGG
AGATTCTTGTTACTGATCTGTTGTTTCCTGATCAAAGTCAACCGACCTTC
ATCATAAGTTGGGTGCTTGAAAAANTCCTTGATTTGACGAAGATTCCCGA
CCTCTTCACTATCTCCTCTGAGTCTTGGATCACGAACAGCCGAAGCAGCC
TTTGGGAAATCACTGTAACAGCTCCTGGTACCATATTGAATTCGATTTGA
ATTATGTTCATCAGGATGGATTCCTTTGAACATGGTAGGGATTTTGAGAA
CATCGTTCATGAAAACAAGGCAATCTTTGACACCAGCGCTTTGAAAGAAT
GCACCGATCAAAGCTTCCATACAGTCAGCCAAAGACTTGTCTTGCACAAC
TTGGTATGAATAAGGACTTGAGAACGGTAGTTCTTTTTCAGGTGTGTCTT
CCTCCATTGGTTCGTCAGGTATGGATCTCTTGAATGCAGGTGGTAGCCAG
ACGGTCAGTGGGTTTTTGTTGTCACTTCCACGATTCGTATCACCAAAAtg
tgaattgttcacataagAAGCTGCATTCAATTGGACGGCAATGTTGCGGA
GATTCTTGTTACTGATCTGTTGTTTCCTGATCAAAGTCAACCGACCTTCA
TCATAAGTTGGGTGcttgaaaaacaagaaaatcgACACAGCTTGTTTCAA
GAATGCATCACCGAGCATCTCCAGACGTTCTAAGTTGACATCAAACAAAG
CTTGCCTTGTTGTCAATGCTTCGAAGATTTCAGACGGTGCTGGAGATTTT
GGAAATCTTGGATGCAATAATAATCTCATCTTCTGTATCTCTGAAGCACT
TGATCCCTGGTTCATCTCCATTTCACCTGCGTCTGGTAAATCCATATAGG
ATAGAATCTTGTTCCGGAATTCATCAGCATTCAATCCACATTCGAATCGG
TACAGAAAGTAAGGAAACAGGATAGCTTGCATATGAAGTTGAGAAGACAA
GGAGCTAACTACTTGACATAGCTCTGGAACCAACTCTTCTTTGTGTCGAC
CACTTTCTTTCTTGCTGTCTCTCATGGTTTCTACTTCATGGTAATTGACA
GATCTGGAGACTGGGACGACTTGCATTAGTAATGAATTGACATCGACAGG
ACGGTTGTATCTTTTCTGGTAATAATGTGCAAAAGTTTTGTTTCCTTCCA
TAAAGTCACCAGCTATTTTGGTTGACGGCTCAACGACATAGTAAGGACGT
CTATTCATTTTCTCATCGTCTAGGTAAGTCTTCCTAATAACCTGTTGTTG
GTTAGGATCAGGAATTTGATTGAGATTCAGTGACTTTGAGACTGTATCCA
TCTGCATGAAGTCGATTGGTTGCGACTTGAATCTAAAGACATCACGTTGG
ATTTGAGACATTGCTTTTGGTGTTAGTATCACAACGAAAGCTTTGGAGAT
TTCAAAATCTGTATCATCTCTGTAAAGCGTCAAATCTTCGGGAATGTATT
GCTTGTAGAAGTCTGTAGACATATACTGACTGAATCTTTCAATAGATTCT
TGATGTTTGGTGGAGAGCTGAAATGATGGTGATTCAAGTTTTCTCAACGT
GACAGTTATTTCGCCAGATCGTGTGTACAACTTCACTGGTTGAAACTATT
AAAAACGAataaaagtaagtaagtctgcgaccgcagtcggaggcgacccg
aaggctcctctttcgatagctatatacccgaaggtaggggagggcgccac
tctttctccctggattttcCACTTCCACTTTccatccttctcttaattgc
tgagcatcaagcagagaggcatcaagtaccattttgagaatctttggtat
gacccagctgggggttgaacccacaaccttgcaaaccgtagccggatgtt
ctac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004526-exon-sc0000045-1491911889:707656..709909 | TCONS_00004526-exon-sc0000045-1491911889:707656..709909 | Clytia hemisphaerica | exon |
| TCONS_00004526-exon-sc0000045-1510915933:707656..709909 | TCONS_00004526-exon-sc0000045-1510915933:707656..709909 | Clytia hemisphaerica | exon |
| TCONS_00004526-exon-sc0000045-1575043694:707656..709909 | TCONS_00004526-exon-sc0000045-1575043694:707656..709909 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:707656..709909 + |
Blast
The following BLAST results are available for this feature:
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