TCONS_00004524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004524
Unique NameTCONS_00004524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004524 ID=TCONS_00004524|Name=TCONS_00004524|organism=Clytia hemisphaerica|type=transcript|length=3280bp
CAAGAACGATAAAAAATCTATGATTGCGTTATGCCTCTTAAAGCAATTTA
AAAGTCATTATAAAAGATAGCGTAGAGCGAGGGAATATGCCACTTTGAGA
AAAACGTAGGAATTAAGAaaaaaagctatttcaaaaaaatggagaGGTTT
ATTCTCAGTATTTGGCTTGTTTTGGTATGTGTGGGGTATTCATCATCCCG
ATGCATAAGTGAATACTCAAAAGGGCGTTTCACTGCATCAAGGGATTCCA
ATTGTTCCAACTCTGGATACACGTCCATACCGTGGAAAGAAATACCTTAT
TACAGACGTGCTATACTCTTCATGAATAATAACAAAATTACTCAATTGCG
CCGTGAAGATTTTGCTGTGGAAGGAAAGAAGATAGTTCTTTATTTGCATG
GAAACCCTATCAAAACACTCCAAGCTAACGTATTTTATGATCTCAAAGAC
CTTAGAGAACTTTCTGTTTCTGCAGAGGAAATTGAGGATGGAGCCTTTAA
CGGTTTGACAAACCTGCAATACTTATGGATCATTGGTAGTGAGAAGTTAA
CGTCTTTACCTCGTAACATTTTAAAATCATTACCAAATTTGAAAGAACTG
TCTATCAATAGTACTGGTATCACAACGATTCAAAGTCGCTTCTTAGCAGG
CTTCGAACATCTAACCTTCGTAGATCTATCGCACAATAAGATTCGTACCA
TCGAAAAAAATGTAATGGAGAAAACTTTTCATGTTGATCAGATCAGACTG
AATGGAAACCAACTCAACAAAATACCCAGCGATTTAGTCAAAAGATTGAA
AAGACTCGATTTGAGCAAGAATCATTTCACTCGTATTGGAGAAGACCAAT
TTTCAATGTTTACAGAGCTGACACACCTTGATCTGTCTGTCAATAACCTA
CAGGAACTACcgtcaaacattttcaaacatAATACACAACTCCAGTCATT
AAAATTACAAAGGACAAACATCAGTTTCATTCCCAGTATTAACTTACTCA
ATAACTTGCATTATCTCGACATAAGTTTTAACCATTTGGAGAAATTATCT
ATCAATACGAACGGAAAGATTCTATCTGGGGGTGGCTATCAATTGAGATT
TCTTAAAATTAGAAACTCTGGATTAAAGAAATTATACTTCTCAGGTGGGC
AACGAAGTTTTAAGGAGCTTGATATTTCAGAAAACTGTTTTGTTAAACAT
CCTTACACTAGATTTTCAATTAAGGTCCTCAACGTGTCAAATAGTTGCTT
GAATGAAACCATTGAACCATATTATAATGGTGCTGATTGGGTCATGGATT
TACACGGTAATAACTATCGAAATGTCATTGTGAATAGAAGTCGAACACAT
TACCAAGGGAGTATTATTCTCAGTCATAATAAGATTGAACGGATTCAAAT
ACGATCTGATTCATTGAAATTACTCGACCTCAGCTACAACGTACTGTCTT
CCACTTCGAATATCTTAATCCCAACCTATCTTAACATCGACATTGGAAAA
TTTATCCTCAAAGGGAATCAAATCCATGATCTTCAATCAAAACACATGAA
GAAAATACAAGTTACTCACCTGGACTTATCAGACAACAACATTTCGCAAT
TCCCAAACACTATGCTCAATCCATCTGCTATAAAATATATGAATTTTGCA
AATAACAAAATCGCACATGTACCAAAGACGATATCGACTAGTTTTAGCAA
TTTAATCGAGCTAAATCTTCGGAATAACTCTTTAGTCAGTTTACCATATG
CCATCTTCAGCGATGCCtctactttgaaaaaattcgattTATCAAGTAAT
GATCTTAAATGTTCTTGCAATCTAACAATCACCTTGAACCTAATGCAAAA
CAAAGACAGTATTGTTGGCTCGTGTGTGGATGATACATTCAATAAGCAAA
ACCTGACCAGCTTCACCGGAGATATTGCGGAAATCTCCAAGGATACCAAA
TGCAACTTATGCCCGATTGATCCATGCAGCTGTCGTGGTGAATGCAAAGC
TAGCGAGCAAAAGGGTTTCCTCTGCAAATGTGATGAAGGTTATACTGGCA
GGCATTGCCAATTCAGCAAATCGAGCTGCTTTTTAACACAAACCTGTGGC
TTGTGCAATGACACTATTTGTGGAGAACATGGAACTTGTAAAGAGGTTAG
TCCTACTGACTATAAATGTAAATGTAAGGCCGGCTACACTGGCACCTATT
GCAATATACCTCAGTGCATACTAGAGCAGAATTGTGGTCTATGTAGTAAA
AATTCTCCATGTAACGGTAACGGAACATGTCAAGAGATTTTGAAAAAGGA
CGGCTCCATTTCTAACAACTGCACTTGTTATGAGGGTTATAGTGGTAATC
GCTGCCAACATTTAAGCTTGTGTAAAGCTTGCAAGATTCATCAACCCGTT
TGCGAATCCTATACTCATGGATGTAAATGTTCTGGTAAAGTTTGTATTCT
AAACTGTGTTGAAACTCAGTCATGTGGCTTGTGCACTGAAGGTTATTGTA
TGTCTTAATGGAGGAACCTGCTTTGAAAATTATTATGGGCCCATTTACAC
TGAAGGACATGAGTTGCAGAATGCAAATCACTCTTGTCGGTGTATGAAAG
GATTCTTCGGGAAACGTTGCGAAGCTGTTGATAAAAAGCGCACGGAATCG
AATAATATTGTCTGCAGTAATTGTGTGGTGAGAGATCCTGACAATTTGTG
GAAGAATTTCACCATCACAGATTTGGTGATTATCATTGGATTTGTCACCT
TGGTGTTGTATAAGGTTCGACGGAAGCTCTACCGAACGAACAATGTTGAA
CGCTTCAGCAATCACGCGATGTCctagatttttcatttttggaaatttaa
taCGTATGTAGAATTATTTTGTAAggtttttatctataagaaagGAAGAT
AAAAAGCAAAATGTATACTTTTTATTCTGTTATGTCAGCATGATGCAGGC
GTTCGGTGCGGAGGGAAAACCCTTCCAAAATGTAGAACGTAGAGCTTTCC
AAATCTATCCTAAAACAACAATTGTTGACAAGTCTTGCATCTTCTACTAG
TACATTACTCGTATAAGAACGATTAACAATTTACTGATCAATCCTAACTA
TGCAGCCGTAAGCTTCATGGACATTTACTTTACAACAGCTGGCGAGCAGC
AAAGACCATATTTCAGTAAAATCTCTATTCATGGGAACTATTTcagcatt
tttttgaaaactagtTTTGGAAAGTTTAGTGCAAACTATTTCTTAGAGAT
AATTTTTCTAGAGCTCAATGAAAAATGTGG
Run BLAST on NCBI

protein sequence of TCONS_00004524-protein

>TCONS_00004524-protein ID=TCONS_00004524-protein|Name=TCONS_00004524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=789bp
MERFILSIWLVLVCVGYSSSRCISEYSKGRFTASRDSNCSNSGYTSIPWK
EIPYYRRAILFMNNNKITQLRREDFAVEGKKIVLYLHGNPIKTLQANVFY
DLKDLRELSVSAEEIEDGAFNGLTNLQYLWIIGSEKLTSLPRNILKSLPN
LKELSINSTGITTIQSRFLAGFEHLTFVDLSHNKIRTIEKNVMEKTFHVD
QIRLNGNQLNKIPSDLVKRLKRLDLSKNHFTRIGEDQFSMFTELTHLDLS
VNNLQELPSNIFKHNTQLQSLKLQRTNISFIPSINLLNNLHYLDISFNHL
EKLSINTNGKILSGGGYQLRFLKIRNSGLKKLYFSGGQRSFKELDISENC
FVKHPYTRFSIKVLNVSNSCLNETIEPYYNGADWVMDLHGNNYRNVIVNR
SRTHYQGSIILSHNKIERIQIRSDSLKLLDLSYNVLSSTSNILIPTYLNI
DIGKFILKGNQIHDLQSKHMKKIQVTHLDLSDNNISQFPNTMLNPSAIKY
MNFANNKIAHVPKTISTSFSNLIELNLRNNSLVSLPYAIFSDASTLKKFD
LSSNDLKCSCNLTITLNLMQNKDSIVGSCVDDTFNKQNLTSFTGDIAEIS
KDTKCNLCPIDPCSCRGECKASEQKGFLCKCDEGYTGRHCQFSKSSCFLT
QTCGLCNDTICGEHGTCKEVSPTDYKCKCKAGYTGTYCNIPQCILEQNCG
LCSKNSPCNGNGTCQEILKKDGSISNNCTCYEGYSGNRCQHLSLCKACKI
HQPVCESYTHGCKCSGKVCILNCVETQSCGLCTEGYCMS
Run BLAST on NCBI

transcript from alignment at sc0000045:636649..640923+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004524 ID=TCONS_00004524|Name=TCONS_00004524|organism=Clytia hemisphaerica|type=transcript|length=4275bp|location=Sequence derived from alignment at sc0000045:636649..640923+ (Clytia hemisphaerica)
CAAGAACGATAAAAAATCTATGATTGCGTTATGCCTCTTAAAGCAATTTA
AAAGTCATTATAAAAGATAGCGTAGAGCGAGGGAATATGCCACTTTGAGA
AAAACGTAGGAATTAAGAaaaaaagctatttcaaaaaaatggagaGGTTT
ATTCTCAGTATTTGGCTTGTTTTGGTATGTGTGGGGTATTCATCATCCCG
ATGCATAAGTGAATACTCAAGTACGTAGAAGTATGATAATTTTAATGATG
AATTTTACATTATTTGTTTCTTCCATGGTTTCAgtccacttttcaggtgc
ccccattgaagcatggtgcccccaacgagttaggtccccttgagaaattg
ctttgagttaggtacccctattcagccgataatttttttgaattgacact
ttttgttcttttgtcattcctaaaatctTAATGATGCTGGGGTAaataaa
ttcaataatttgaaatattttgaagtattcgatttggaaaatataaccag
ctcccagagcctccatcaagacagctaggtacccttcATGAATAGGTagc
cccaaagaattgcaaaacATTAGCCCCCTactactaacctggcctagttg
cccttcagatttctgggggggctgaaaccatgttCTTCCAGGAAAAAATC
CGTTGACCATGAATATCTCGATTTTCATCCCCGgagggggggcactcgat
ctgaaaacgaccatacgttcggcccaaaatttggcttctaaaatcggacc
ctgtgcagtgaatttccatgaaaaatcatacccttacagtgcactttttc
aaaatttccaagaaaatatggaatttgtcctccaaaattgaccaattttg
tgccaattttacNcatgaaaaaaaattggcctacccttacagtgcactag
ctgaactatgaaaaacctacccttaagggccgaacgtctggtaggtcatt
taccttgagtgccccccccgggttttcACCAAATCAAATGGAACCTCTaa
actttcacatttttcaagattataaatataaatatatcTTCCGACCTCTT
TGTAAAACTTTTTCTTAGAAAAGCTCGATACCATACTTGAAGTTTTACCC
TTTTTATATGCCCAGAAGGAAAAAAAGGCTCAAAGTAAAATTCGCAGCTA
TAAAACTCACCAAGACAGATGAATCTCTTTTAATTGTAcatacatatttt
ttatttgtcttATAGAAGGGCGTTTCACTGCATCAAGGGATTCCAATTGT
TCCAACTCTGGATACACGTCCATACCGTGGAAAGAAATACCTTATTACAG
ACGTGCTATACTCTTCATGAATAATAACAAAATTACTCAATTGCGCCGTG
AAGATTTTGCTGTGGAAGGAAAGAAGATAGTTCTTTATTTGCATGGAAAC
CCTATCAAAACACTCCAAGCTAACGTATTTTATGATCTCAAAGACCTTAG
AGAACTTTCTGTTTCTGCAGAGGAAATTGAGGATGGAGCCTTTAACGGTT
TGACAAACCTGCAATACTTATGGATCATTGGTAGTGAGAAGTTAACGTCT
TTACCTCGTAACATTTTAAAATCATTACCAAATTTGAAAGAACTGTCTAT
CAATAGTACTGGTATCACAACGATTCAAAGTCGCTTCTTAGCAGGCTTCG
AACATCTAACCTTCGTAGATCTATCGCACAATAAGATTCGTACCATCGAA
AAAAATGTAATGGAGAAAACTTTTCATGTTGATCAGATCAGACTGAATGG
AAACCAACTCAACAAAATACCCAGCGATTTAGTCAAAAGATTGAAAAGAC
TCGATTTGAGCAAGAATCATTTCACTCGTATTGGAGAAGACCAATTTTCA
ATGTTTACAGAGCTGACACACCTTGATCTGTCTGTCAATAACCTACAGGA
ACTACcgtcaaacattttcaaacatAATACACAACTCCAGTCATTAAAAT
TACAAAGGACAAACATCAGTTTCATTCCCAGTATTAACTTACTCAATAAC
TTGCATTATCTCGACATAAGTTTTAACCATTTGGAGAAATTATCTATCAA
TACGAACGGAAAGATTCTATCTGGGGGTGGCTATCAATTGAGATTTCTTA
AAATTAGAAACTCTGGATTAAAGAAATTATACTTCTCAGGTGGGCAACGA
AGTTTTAAGGAGCTTGATATTTCAGAAAACTGTTTTGTTAAACATCCTTA
CACTAGATTTTCAATTAAGGTCCTCAACGTGTCAAATAGTTGCTTGAATG
AAACCATTGAACCATATTATAATGGTGCTGATTGGGTCATGGATTTACAC
GGTAATAACTATCGAAATGTCATTGTGAATAGAAGTCGAACACATTACCA
AGGGAGTATTATTCTCAGTCATAATAAGATTGAACGGATTCAAATACGAT
CTGATTCATTGAAATTACTCGACCTCAGCTACAACGTACTGTCTTCCACT
TCGAATATCTTAATCCCAACCTATCTTAACATCGACATTGGAAAATTTAT
CCTCAAAGGGAATCAAATCCATGATCTTCAATCAAAACACATGAAGAAAA
TACAAGTTACTCACCTGGACTTATCAGACAACAACATTTCGCAATTCCCA
AACACTATGCTCAATCCATCTGCTATAAAATATATGAATTTTGCAAATAA
CAAAATCGCACATGTACCAAAGACGATATCGACTAGTTTTAGCAATTTAA
TCGAGCTAAATCTTCGGAATAACTCTTTAGTCAGTTTACCATATGCCATC
TTCAGCGATGCCtctactttgaaaaaattcgattTATCAAGTAATGATCT
TAAATGTTCTTGCAATCTAACAATCACCTTGAACCTAATGCAAAACAAAG
ACAGTATTGTTGGCTCGTGTGTGGATGATACATTCAATAAGCAAAACCTG
ACCAGCTTCACCGGAGATATTGCGGAAATCTCCAAGGATACCAAATGCAA
CTTATGCCCGATTGATCCATGCAGCTGTCGTGGTGAATGCAAAGCTAGCG
AGCAAAAGGGTTTCCTCTGCAAATGTGATGAAGGTTATACTGGCAGGCAT
TGCCAATTCAGCAAATCGAGCTGCTTTTTAACACAAACCTGTGGCTTGTG
CAATGACACTATTTGTGGAGAACATGGAACTTGTAAAGAGGTTAGTCCTA
CTGACTATAAATGTAAATGTAAGGCCGGCTACACTGGCACCTATTGCAAT
ATACCTCAGTGCATACTAGAGCAGAATTGTGGTCTATGTAGTAAAAATTC
TCCATGTAACGGTAACGGAACATGTCAAGAGATTTTGAAAAAGGACGGCT
CCATTTCTAACAACTGCACTTGTTATGAGGGTTATAGTGGTAATCGCTGC
CAACATTTAAGCTTGTGTAAAGCTTGCAAGATTCATCAACCCGTTTGCGA
ATCCTATACTCATGGATGTAAATGTTCTGGTAAAGTTTGTATTCTAAACT
GTGTTGAAACTCAGTCATGTGGCTTGTGCACTGAAGGTTATTGTATGTCT
TAATGGAGGAACCTGCTTTGAAAATTATTATGGGCCCATTTACACTGAAG
GACATGAGTTGCAGAATGCAAATCACTCTTGTCGGTGTATGAAAGGATTC
TTCGGGAAACGTTGCGAAGCTGTTGATAAAAAGCGCACGGAATCGAATAA
TATTGTCTGCAGTAATTGTGTGGTGAGAGATCCTGACAATTTGTGGAAGA
ATTTCACCATCACAGATTTGGTGATTATCATTGGATTTGTCACCTTGGTG
TTGTATAAGGTTCGACGGAAGCTCTACCGAACGAACAATGTTGAACGCTT
CAGCAATCACGCGATGTCctagatttttcatttttggaaatttaataCGT
ATGTAGAATTATTTTGTAAggtttttatctataagaaagGAAGATAAAAA
GCAAAATGTATACTTTTTATTCTGTTATGTCAGCATGATGCAGGCGTTCG
GTGCGGAGGGAAAACCCTTCCAAAATGTAGAACGTAGAGCTTTCCAAATC
TATCCTAAAACAACAATTGTTGACAAGTCTTGCATCTTCTACTAGTACAT
TACTCGTATAAGAACGATTAACAATTTACTGATCAATCCTAACTATGCAG
CCGTAAGCTTCATGGACATTTACTTTACAACAGCTGGCGAGCAGCAAAGA
CCATATTTCAGTAAAATCTCTATTCATGGGAACTATTTcagcattttttt
gaaaactagtTTTGGAAAGTTTAGTGCAAACTATTTCTTAGAGATAATTT
TTCTAGAGCTCAATGAAAAATGTGG

Coding sequence (CDS) from alignment at sc0000045:636649..640923+

>TCONS_00004524 ID=TCONS_00004524|Name=TCONS_00004524|organism=Clytia hemisphaerica|type=CDS|length=4740bp|location=Sequence derived from alignment at sc0000045:636649..640923+ (Clytia hemisphaerica)
atggagaGGTTTATTCTCAGTATTTGGCTTGTTTTGGTATGTGTGGGGTA
TTCATCATCCCGATGCATAAGTGAATACTCAAAAGGGCGTTTCACTGCAT
CAAGGGATTCCAATTGTTCCAACTCTGGATACACGTCCATACCGTGGAAA
GAAATACCTTATTACAGACGTGCTATACTCTTCATGAATAATAACAAAAT
TACTCAATTGCGCCGTGAAGATTTTGCTGTGGAAGGAAAGAAGATAGTTC
TTTATTTGCATGGAAACCCTATCAAAACACTCCAAGCTAACGTATTTTAT
GATCTCAAAGACCTTAGAGAACTTTCTGTTTCTGCAGAGGAAATTGAGGA
TGGAGCCTTTAACGGTTTGACAAACCTGCAATACTTATGGATCATTGGTA
GTGAGAAGTTAACGTCTTTACCTCGTAACATTTTAAAATCATTACCAAAT
TTGAAAGAACTGTCTATCAATAGTACTGGTATCACAACGATTCAAAGTCG
CTTCTTAGCAGGCTTCGAACATCTAACCTTCGTAGATCTATCGCACAATA
AGATTCGTACCATCGAAAAAAATGTAATGGAGAAAACTTTTCATGTTGAT
CAGATCAGACTGAATGGAAACCAACTCAACAAAATACCCAGCGATTTAGT
CAAAAGATTGAAAAGACTCGATTTGAGCAAGAATCATTTCACTCGTATTG
GAGAAGACCAATTTTCAATGTTTACAGAGCTGACACACCTTGATCTGTCT
GTCAATAACCTACAGGAACTACcgtcaaacattttcaaacatAATACACA
ACTCCAGTCATTAAAATTACAAAGGACAAACATCAGTTTCATTCCCAGTA
TTAACTTACTCAATAACTTGCATTATCTCGACATAAGTTTTAACCATTTG
GAGAAATTATCTATCAATACGAACGGAAAGATTCTATCTGGGGGTGGCTA
TCAATTGAGATTTCTTAAAATTAGAAACTCTGGATTAAAGAAATTATACT
TCTCAGGTGGGCAACGAAGTTTTAAGGAGCTTGATATTTCAGAAAACTGT
TTTGTTAAACATCCTTACACTAGATTTTCAATTAAGGTCCTCAACGTGTC
AAATAGTTGCTTGAATGAAACCATTGAACCATATTATAATGGTGCTGATT
GGGTCATGGATTTACACGGTAATAACTATCGAAATGTCATTGTGAATAGA
AGTCGAACACATTACCAAGGGAGTATTATTCTCAGTCATAATAAGATTGA
ACGGATTCAAATACGATCTGATTCATTGAAATTACTCGACCTCAGCTACA
ACGTACTGTCTTCCACTTCGAATATCTTAATCCCAACCTATCTTAACATC
GACATTGGAAAATTTATCCTCAAAGGGAATCAAATCCATGATCTTCAATC
AAAACACATGAAGAAAATACAAGTTACTCACCTGGACTTATCAGACAACA
ACATTTCGCAATTCCCAAACACTATGCTCAATCCATCTGCTATAAAATAT
ATGAATTTTGCAAATAACAAAATCGCACATGTACCAAAGACGATATCGAC
TAGTTTTAGCAATTTAATCGAGCTAAATCTTCGGAATAACTCTTTAGTCA
GTTTACCATATGCCATCTTCAGCGATGCCtctactttgaaaaaattcgat
tTATCAAGTAATGATCTTAAATGTTCTTGCAATCTAACAATCACCTTGAA
CCTAATGCAAAACAAAGACAGTATTGTTGGCTCGTGTGTGGATGATACAT
TCAATAAGCAAAACCTGACCAGCTTCACCGGAGATATTGCGGAAATCTCC
AAGGATACCAAATGCAACTTATGCCCGATTGATCCATGCAGCTGTCGTGG
TGAATGCAAAGCTAGCGAGCAAAAGGGTTTCCTCTGCAAATGTGATGAAG
GTTATACTGGCAGGCATTGCCAATTCAGCAAATCGAGCTGCTTTTTAACA
CAAACCTGTGGCTTGTGCAATGACACTATTTGTGGAGAACATGGAACTTG
TAAAGAGGTTAGTCCTACTGACTATAAATGTAAATGTAAGGCCGGCTACA
CTGGCACCTATTGCAATATACCTCAGTGCATACTAGAGCAGAATTGTGGT
CTATGTAGTAAAAATTCTCCATGTAACGGTAACGGAACATGTCAAGAGAT
TTTGAAAAAGGACGGCTCCATTTCTAACAACTGCACTTGTTATGAGGGTT
ATAGTGGTAATCGCTGCCAACATTTAAGCTTGTGTAAAGCTTGCAAGATT
CATCAACCCGTTTGCGAATCCTATACTCATGGATGTAAATGTTCTGGTAA
AGTTTGTATTCTAAACTGTGTTGAAACTCAGTCATGTGGCTTGTGCACTG
AAGGTTATTGTATGTCTTAAatggagaGGTTTATTCTCAGTATTTGGCTT
GTTTTGGTATGTGTGGGGTATTCATCATCCCGATGCATAAGTGAATACTC
AAAAGGGCGTTTCACTGCATCAAGGGATTCCAATTGTTCCAACTCTGGAT
ACACGTCCATACCGTGGAAAGAAATACCTTATTACAGACGTGCTATACTC
TTCATGAATAATAACAAAATTACTCAATTGCGCCGTGAAGATTTTGCTGT
GGAAGGAAAGAAGATAGTTCTTTATTTGCATGGAAACCCTATCAAAACAC
TCCAAGCTAACGTATTTTATGATCTCAAAGACCTTAGAGAACTTTCTGTT
TCTGCAGAGGAAATTGAGGATGGAGCCTTTAACGGTTTGACAAACCTGCA
ATACTTATGGATCATTGGTAGTGAGAAGTTAACGTCTTTACCTCGTAACA
TTTTAAAATCATTACCAAATTTGAAAGAACTGTCTATCAATAGTACTGGT
ATCACAACGATTCAAAGTCGCTTCTTAGCAGGCTTCGAACATCTAACCTT
CGTAGATCTATCGCACAATAAGATTCGTACCATCGAAAAAAATGTAATGG
AGAAAACTTTTCATGTTGATCAGATCAGACTGAATGGAAACCAACTCAAC
AAAATACCCAGCGATTTAGTCAAAAGATTGAAAAGACTCGATTTGAGCAA
GAATCATTTCACTCGTATTGGAGAAGACCAATTTTCAATGTTTACAGAGC
TGACACACCTTGATCTGTCTGTCAATAACCTACAGGAACTACcgtcaaac
attttcaaacatAATACACAACTCCAGTCATTAAAATTACAAAGGACAAA
CATCAGTTTCATTCCCAGTATTAACTTACTCAATAACTTGCATTATCTCG
ACATAAGTTTTAACCATTTGGAGAAATTATCTATCAATACGAACGGAAAG
ATTCTATCTGGGGGTGGCTATCAATTGAGATTTCTTAAAATTAGAAACTC
TGGATTAAAGAAATTATACTTCTCAGGTGGGCAACGAAGTTTTAAGGAGC
TTGATATTTCAGAAAACTGTTTTGTTAAACATCCTTACACTAGATTTTCA
ATTAAGGTCCTCAACGTGTCAAATAGTTGCTTGAATGAAACCATTGAACC
ATATTATAATGGTGCTGATTGGGTCATGGATTTACACGGTAATAACTATC
GAAATGTCATTGTGAATAGAAGTCGAACACATTACCAAGGGAGTATTATT
CTCAGTCATAATAAGATTGAACGGATTCAAATACGATCTGATTCATTGAA
ATTACTCGACCTCAGCTACAACGTACTGTCTTCCACTTCGAATATCTTAA
TCCCAACCTATCTTAACATCGACATTGGAAAATTTATCCTCAAAGGGAAT
CAAATCCATGATCTTCAATCAAAACACATGAAGAAAATACAAGTTACTCA
CCTGGACTTATCAGACAACAACATTTCGCAATTCCCAAACACTATGCTCA
ATCCATCTGCTATAAAATATATGAATTTTGCAAATAACAAAATCGCACAT
GTACCAAAGACGATATCGACTAGTTTTAGCAATTTAATCGAGCTAAATCT
TCGGAATAACTCTTTAGTCAGTTTACCATATGCCATCTTCAGCGATGCCt
ctactttgaaaaaattcgattTATCAAGTAATGATCTTAAATGTTCTTGC
AATCTAACAATCACCTTGAACCTAATGCAAAACAAAGACAGTATTGTTGG
CTCGTGTGTGGATGATACATTCAATAAGCAAAACCTGACCAGCTTCACCG
GAGATATTGCGGAAATCTCCAAGGATACCAAATGCAACTTATGCCCGATT
GATCCATGCAGCTGTCGTGGTGAATGCAAAGCTAGCGAGCAAAAGGGTTT
CCTCTGCAAATGTGATGAAGGTTATACTGGCAGGCATTGCCAATTCAGCA
AATCGAGCTGCTTTTTAACACAAACCTGTGGCTTGTGCAATGACACTATT
TGTGGAGAACATGGAACTTGTAAAGAGGTTAGTCCTACTGACTATAAATG
TAAATGTAAGGCCGGCTACACTGGCACCTATTGCAATATACCTCAGTGCA
TACTAGAGCAGAATTGTGGTCTATGTAGTAAAAATTCTCCATGTAACGGT
AACGGAACATGTCAAGAGATTTTGAAAAAGGACGGCTCCATTTCTAACAA
CTGCACTTGTTATGAGGGTTATAGTGGTAATCGCTGCCAACATTTAAGCT
TGTGTAAAGCTTGCAAGATTCATCAACCCGTTTGCGAATCCTATACTCAT
GGATGTAAATGTTCTGGTAAAGTTTGTATTCTAAACTGTGTTGAAACTCA
GTCATGTGGCTTGTGCACTGAAGGTTATTGTATGTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002545XLOC_002545Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004524-proteinTCONS_00004524-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004524-exon-sc0000045-1491911889:636649..636868TCONS_00004524-exon-sc0000045-1491911889:636649..636868Clytia hemisphaericaexon
TCONS_00004524-exon-sc0000045-1510915933:636649..636868TCONS_00004524-exon-sc0000045-1510915933:636649..636868Clytia hemisphaericaexon
TCONS_00004524-exon-sc0000045-1575043694:636649..636868TCONS_00004524-exon-sc0000045-1575043694:636649..636868Clytia hemisphaericaexon
TCONS_00004524-exon-sc0000045-1491911889:637864..640923TCONS_00004524-exon-sc0000045-1491911889:637864..640923Clytia hemisphaericaexon
TCONS_00004524-exon-sc0000045-1510915933:637864..640923TCONS_00004524-exon-sc0000045-1510915933:637864..640923Clytia hemisphaericaexon
TCONS_00004524-exon-sc0000045-1575043694:637864..640923TCONS_00004524-exon-sc0000045-1575043694:637864..640923Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:636649..640923 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115525	0.112655	0.209285	0.198603	1.07133	0.627855	2.78191	3.30934	3.61688	5.99095	13.384	2.45659	21.9489	13.1954	4.78718	18.0572	1.97595	4.37224	8.73148	16.1375	0.178714	0.212478	0.0132459	0.120424	0.285278	0.531348	2.09008	0.540983	0.0641119	0.0653199
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00004524 vs. Swiss-Prot (Human)
Match: SLIT1 (Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4)

HSP 1 Score: 83.9593 bits (206), Expect = 2.189e-17
Identity = 96/386 (24.87%), Postives = 150/386 (38.86%), Query Frame = 1 
Query: 1468 IPTYLNIDIGKFILKGNQIHDLQSKHMKKIQVTHLDLSDNNISQFPNTML-NPSAIKYMNFANNKIAHVPKTISTSFSNLIELNLRNNSLVSLPYAIFSDASTLKKFDLSSNDLKCSCNLTITLNLMQN--KDSIVGSCV--DDTFNKQNLTSFTGDI-----AEISKDTKCNLCPIDPCSCRGECKASEQKGFLCKCDEGYTGRHCQFSKSSC----------------------------FLTQTCGL----CNDTICGEHGTCKEVSPTDYKCKCKAGYTGTYCNIPQCILEQNCGLCSKN-SPCNGNGTCQEILKKDGSISNNCTCYEGYSGNRCQHLSLCKACKIHQPVCESYTHGCKCSGKVCILNCVETQSCGLCTEGY 2496
            +P  +  ++ +  L GNQ   +  +      +  +DLS+N IS   N+   N S +  +  + N +  +P        +L  L+L  N + +L   IF+D ++L    + +N L C C+L    + ++   K+  +  C    D   K  LT+            ++   KC+LC   PC  +G C     + + C C  GY GR C+ S  SC                            F   TCG+    C D  C   G C +    +Y C+C   Y G  C       EQ   LCS + +PC     C  +   DG     C C  GY+G+ C           +Q  C  +    +C      ++ V + SC LC EGY
Sbjct:  755 LPKGIPKNVTELYLDGNQFTLVPGQLSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLHGNDISTLQEGIFADVTSLSHLAIGANPLYCDCHLRWLSSWVKTGYKEPGIARCAGPQDMEGKLLLTTPAKKFECQGPPTLAVQAKCDLCLSSPCQNQGTCHNDPLEVYRCACPSGYKGRDCEVSLDSCSSGPCENGGTCHAQEGEDAPFTCSCPTGFEGPTCGVNTDDCVDHACANGGVCVD-GVGNYTCQCPLQYEGKAC-------EQLVDLCSPDLNPCQHEAQC--VGTPDGP---RCECMPGYAGDNCSE---------NQDDCRDH----RCQNGAQCMDEVNSYSC-LCAEGY 1113

HSP 2 Score: 24.6386 bits (52), Expect = 2.189e-17
Identity = 12/43 (27.91%), Postives = 17/43 (39.53%), Query Frame = 2 
Query: 2501 CLNGGTCFENYYGPIYTEGHELQNANHSCRCMKGFFGKRCEAV 2629
            C NG  C +    P+             C+C+ GF G  CE +
Sbjct: 1136 CQNGANCVDQGNRPV-------------CQCLPGFGGPECEKL 1165
The following BLAST results are available for this feature:
BLAST of TCONS_00004524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT12.189e-1724.87Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE... [more]
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