|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004508 ID=TCONS_00004508|Name=TCONS_00004508|organism=Clytia hemisphaerica|type=transcript|length=2402bp
TTATAAATACCTATACATAAAAACAGCACCAAGGTAAAAAGTTAATTTAC
ATTTGGAAAGTTACAACAATaaccacaaaaaaaattaacaacaaaCAATT
CtcagatttcaaattaatgCAAACTAAAACAAAACAACGCGTAAAATCAA
CTTCGCAAGCGTAAATCGTAATATTTCATATAATTGATTTCCAAGACTGT
TTCCTCTTGAATTGATTTCTCAGAAGAGTCTAGAAGTGATGAATTTTCTC
GTCAAAAACATGTTTaatttttacaaactttcacATTTCGCGATACTGGA
TTTCATAAAAAAGGCAAGAAATCGcgaaattcgaaaatttaatccgatta
aaacAACACACTACTTCATTATATTATTCACATAATGTTTTNATTTAACA
ACAAACATTTCtcagatttcaaattaatgCAAACTAAAACAAAACAACGC
GTAAAATCAACTTCGCAAGCGTAAATCGTAATATTTCATATAATTGATTT
CCAAGACTGTTTCCTCTTGAATTGATTTCTCAGAAGAGTCTAGAAGTGAT
GAATTTTCTCGTCAAAAACATGTTTaatttttacaaactttcacATTTCG
CGATACTGGATTTCATAAAAAAGGCAAGAAATCGcgaaattcgaaaattt
aatccgattaaaacAACACACTACTTCATTATATTATTCACATAATGTTT
TGGGACTTTAACGACGGAACACCTCAGTCCCATTAACTTACAAGGAAGAG
GTGTCTCGAAATTCCACTTATTCGTATCAATATCATAACTTTCAACTGTG
TCAAGGTATTGCCATGTGGAATCCCTACCACCTATAATGTAAATGGTATT
TTCTGAGATTGCATAGCCTGCTCTCCACCTGGCAACAGACGCTGAAGCCC
CTTGTGTCCAAGTGTCATGATCGATATTATAGATTTCAAGAGAATTGACA
CACTCTGAATTATAACCTCCACACACATAAATTTGATGACCATGAATGAC
GTTGGTTGCACCAGCTCTAGGGTTTGACATTTCTGCAACCATTCGCCACT
CTCCATCGACACATCGCTCAACCGTTGCGCATTTCCAACCACCaattgaa
aacaaaccataCTGGTTGCTTCCTACAAAACCATGACTATATCTTGCTTG
ATTCATGTTTGGAAATACTTTCCAGCATCTTGATTCATCATCGTAGAATT
CAACACTATCTAATGCATTATAATTCTCATCCAATCCACCACTAACAAAA
AGTTTGTCCTGATAAACTGATATACCCAaggattttcttttaaaatgcaT
TTGTCCCAAGCCTCTCCATTTATTACTCATTGAGTTATAGTGCTCTGTTG
TGTTCAAAGGACCTTTTCGACTATTAAATCCTCCTGCAACAAACAGATCA
TTCCCAATTGATACTGTTCCATGATCGTGTCGTGATGTTTGCATTGGTGC
AAGATGGGCCCAGTTGCATTCGTTTGGTAGAAATGCAAAAGAAGATACAA
GGCAAGAGTTTCCATCATATCCACCTGTTGTCATGATTACAGTTGAAGTG
TCTAAACAGTGTCGTGGTTGTAAATTCTCTTTACTAGCATCTAGGGTGGC
TGAATCATCGACACACATTGCATCATTGGTAATCATCAATATGTTTTCAG
GGGTACTCAGAGAAAGTGAATAGAATCGAGATGTAAGCATATCAAAGCAT
TGCCCACTTAAAAATCCAGTTCTTACACATTTGAAAACATCATTGAAATA
ATTAGATCTTTGCTTCCAATCATGATCCAACCATTTGAGGTATGTGAGCA
AAACAAGATCTTCACTTTCAACCTGTATTCCATCACTTGATAGCACCTCT
AAGATTGTATTATTCCGCATGCGAAGAAAGTTTTCATACttaattatttt
gtcaaaattttcttcaatcatTTTCATGCACTTTTCTTTCAATTCAAAGC
ATTGGAAATGGGAAGCAATGTCAAAAATATCAAGAGAATTTGACAGCTGT
AGAGCCTTCTCCAAAAATCTGCAGCACTTTTGCTTCAAATTCAACATCAT
AAAATAACTCGAGAAGGATAGAAAACCTTCAATGTTATGTTCATCAAGGG
ATATAAAACCTGTGTATATGTAAGTGATAAATTCCTTCGATAAATCTGTT
TCACCGTAGATTGTGGAAAGGTCAACAATACCTTCATTTGTTTCTTTCAT
GTTTGTCTGGAACATTGCAGCAAAAACTTCAGAAGCCGCTGAAAGTATGA
CTCGATGAGCCAGGATCTCTTTACTCTTGAATTTAAGTAGCACATCTGTG
AAATTTCCATCAATTTGGTACTGAGATAAGCTGTTAAGCAAGCCTTCTCT
GTGCTGCTTATCAAATTTTGATTCTACCAcggccgccatcttgaaaaggt
tt Run BLAST on NCBI transcript from alignment at sc0000045:472891..475292+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004508 ID=TCONS_00004508|Name=TCONS_00004508|organism=Clytia hemisphaerica|type=transcript|length=2402bp|location=Sequence derived from alignment at sc0000045:472891..475292+ (Clytia hemisphaerica)
TTATAAATACCTATACATAAAAACAGCACCAAGGTAAAAAGTTAATTTAC
ATTTGGAAAGTTACAACAATaaccacaaaaaaaattaacaacaaaCAATT
CtcagatttcaaattaatgCAAACTAAAACAAAACAACGCGTAAAATCAA
CTTCGCAAGCGTAAATCGTAATATTTCATATAATTGATTTCCAAGACTGT
TTCCTCTTGAATTGATTTCTCAGAAGAGTCTAGAAGTGATGAATTTTCTC
GTCAAAAACATGTTTaatttttacaaactttcacATTTCGCGATACTGGA
TTTCATAAAAAAGGCAAGAAATCGcgaaattcgaaaatttaatccgatta
aaacAACACACTACTTCATTATATTATTCACATAATGTTTTNATTTAACA
ACAAACATTTCtcagatttcaaattaatgCAAACTAAAACAAAACAACGC
GTAAAATCAACTTCGCAAGCGTAAATCGTAATATTTCATATAATTGATTT
CCAAGACTGTTTCCTCTTGAATTGATTTCTCAGAAGAGTCTAGAAGTGAT
GAATTTTCTCGTCAAAAACATGTTTaatttttacaaactttcacATTTCG
CGATACTGGATTTCATAAAAAAGGCAAGAAATCGcgaaattcgaaaattt
aatccgattaaaacAACACACTACTTCATTATATTATTCACATAATGTTT
TGGGACTTTAACGACGGAACACCTCAGTCCCATTAACTTACAAGGAAGAG
GTGTCTCGAAATTCCACTTATTCGTATCAATATCATAACTTTCAACTGTG
TCAAGGTATTGCCATGTGGAATCCCTACCACCTATAATGTAAATGGTATT
TTCTGAGATTGCATAGCCTGCTCTCCACCTGGCAACAGACGCTGAAGCCC
CTTGTGTCCAAGTGTCATGATCGATATTATAGATTTCAAGAGAATTGACA
CACTCTGAATTATAACCTCCACACACATAAATTTGATGACCATGAATGAC
GTTGGTTGCACCAGCTCTAGGGTTTGACATTTCTGCAACCATTCGCCACT
CTCCATCGACACATCGCTCAACCGTTGCGCATTTCCAACCACCaattgaa
aacaaaccataCTGGTTGCTTCCTACAAAACCATGACTATATCTTGCTTG
ATTCATGTTTGGAAATACTTTCCAGCATCTTGATTCATCATCGTAGAATT
CAACACTATCTAATGCATTATAATTCTCATCCAATCCACCACTAACAAAA
AGTTTGTCCTGATAAACTGATATACCCAaggattttcttttaaaatgcaT
TTGTCCCAAGCCTCTCCATTTATTACTCATTGAGTTATAGTGCTCTGTTG
TGTTCAAAGGACCTTTTCGACTATTAAATCCTCCTGCAACAAACAGATCA
TTCCCAATTGATACTGTTCCATGATCGTGTCGTGATGTTTGCATTGGTGC
AAGATGGGCCCAGTTGCATTCGTTTGGTAGAAATGCAAAAGAAGATACAA
GGCAAGAGTTTCCATCATATCCACCTGTTGTCATGATTACAGTTGAAGTG
TCTAAACAGTGTCGTGGTTGTAAATTCTCTTTACTAGCATCTAGGGTGGC
TGAATCATCGACACACATTGCATCATTGGTAATCATCAATATGTTTTCAG
GGGTACTCAGAGAAAGTGAATAGAATCGAGATGTAAGCATATCAAAGCAT
TGCCCACTTAAAAATCCAGTTCTTACACATTTGAAAACATCATTGAAATA
ATTAGATCTTTGCTTCCAATCATGATCCAACCATTTGAGGTATGTGAGCA
AAACAAGATCTTCACTTTCAACCTGTATTCCATCACTTGATAGCACCTCT
AAGATTGTATTATTCCGCATGCGAAGAAAGTTTTCATACttaattatttt
gtcaaaattttcttcaatcatTTTCATGCACTTTTCTTTCAATTCAAAGC
ATTGGAAATGGGAAGCAATGTCAAAAATATCAAGAGAATTTGACAGCTGT
AGAGCCTTCTCCAAAAATCTGCAGCACTTTTGCTTCAAATTCAACATCAT
AAAATAACTCGAGAAGGATAGAAAACCTTCAATGTTATGTTCATCAAGGG
ATATAAAACCTGTGTATATGTAAGTGATAAATTCCTTCGATAAATCTGTT
TCACCGTAGATTGTGGAAAGGTCAACAATACCTTCATTTGTTTCTTTCAT
GTTTGTCTGGAACATTGCAGCAAAAACTTCAGAAGCCGCTGAAAGTATGA
CTCGATGAGCCAGGATCTCTTTACTCTTGAATTTAAGTAGCACATCTGTG
AAATTTCCATCAATTTGGTACTGAGATAAGCTGTTAAGCAAGCCTTCTCT
GTGCTGCTTATCAAATTTTGATTCTACCAcggccgccatcttgaaaaggt
tt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004508-exon-sc0000045-1491911889:472891..475292 | TCONS_00004508-exon-sc0000045-1491911889:472891..475292 | Clytia hemisphaerica | exon |
| TCONS_00004508-exon-sc0000045-1510915933:472891..475292 | TCONS_00004508-exon-sc0000045-1510915933:472891..475292 | Clytia hemisphaerica | exon |
| TCONS_00004508-exon-sc0000045-1575043694:472891..475292 | TCONS_00004508-exon-sc0000045-1575043694:472891..475292 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:472891..475292 + |
Blast
BLAST of TCONS_00004508 vs. Swiss-Prot (Human)
Match: KLHL3 (Kelch-like protein 3 OS=Homo sapiens GN=KLHL3 PE=1 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 6.975e-61 Identity = 160/552 (28.99%), Postives = 267/552 (48.37%), Query Frame = -2
Query: 758 LLNSLSQYQIDGNFTDVLLKFKSKEILAHRVILSAASEVFAAMFQTNMKETNEGIVDLSTIYGETDLSKEFITYIYTGFISLDEHNIEGFLSFSSYFMMLNLKQKCCRFLEKALQLSNSLDIFDIASHFQCFELKEKCMKMIEENFDKIIKYENFLRMRNNTILEVLSSDGIQVESEDLVLLTYLKWLDHDWKQRSNYFNDVFKCVRTGFLSGQCFDMLTSRFYSLSLSTPENILMITNDAMCVDDSATLDASKENL--------------QPRHCLDTSTVIMTTGGYDGNSCL-VSSFAFLPNECNWAHLAPMQTSRHDHGTVSIGNDLFVAGGFNSRKGPLNTTEHYNSMSNKWRGLGQMHFKRKSLGISVYQDKLFVSGGLDENYNALDSVEFYDDESRCWKVFPNMNQARYSHGFVGSNQYGLFSIGGWKCA------TVER--CVDGEWRMVAEMSNPRAGATNVIHGHQIYVCGGYNSECV-NSLEIYNIDHDTWTQGASASVARWRAGYAISENTIYIIGGRDSTWQYLDTVESYDIDTNKWNF 2341
++N L Q+ DV++ + EI AHRV+L+A S F AMF +M E+ +++ + G+T LSK I YIYT I + E N++ L +S +++++Q CC FL+ L +N L I A C +L ++ E++F +++ E FL + + + ++SSD + V SE+ V + W++++ + R + + + VR L R Y + T E +I N+ C D ++A K +L +PR + V++ GG + V + F E W +A + + R G V + ++ GGFN + T + Y+ + ++W + M +R +LG +V D L+ GG D + L SVE Y ++ W MN R S G VG + L+++GG+ A TVE+ EW VA+MS R+GA + Q+Y GG++ V S+E+Y+ +TW Q A ++ R AG +Y++GG D + L +VE Y+ T+KW
Sbjct: 39 VMNELRSKQL---LCDVMIVAEDVEIEAHRVVLAACSPYFCAMFTGDMSESKAKKIEIKDVDGQT-LSK-LIDYIYTAEIEVTEENVQVLLPAASLLQLMDVRQNCCDFLQSQLHPTNCLGIRAFADVHTCTDLLQQANAYAEQHFPEVMLGEEFLSLSLDQVCSLISSDKLTVSSEEKVFEAVISWINYEKETRLEHMAKLMEHVRLPLL---------PRDY--LVQTVEEEALIKNNNTCKD--FLIEAMKYHLLPLDQRLLIKNPRTKPRTPVSLPKVMIVVGGQAPKAIRSVECYDF--EEDRWDQIAELPSRRCRAGVVFMAGHVYAVGGFNGSLR-VRTVDVYDGVKDQWTSIASMQERRSTLGAAVLNDLLYAVGGFDGS-TGLASVEAYSYKTNEWFFVAPMNTRRSSVG-VGVVEGKLYAVGGYDGASRQCLSTVEQYNPATNEWIYVADMSTRRSGAGVGVLSGQLYATGGHDGPLVRKSVEVYDPGTNTWKQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCN-LASVEYYNPVTDKWTL 566
The following BLAST results are available for this feature:
|
