TCONS_00004506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004506
Unique NameTCONS_00004506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length763

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004506 ID=TCONS_00004506|Name=TCONS_00004506|organism=Clytia hemisphaerica|type=transcript|length=763bp
ACCGTATTGGCAAGGATCAGCACCAGATATACCATGACCAGCTCAATGCT
GGTCGAAATGAACTACCCAATCAACGCATgctttcaatgacgtcatccaa
TTTTCATAGACCGCCATTGGTTCACAATAAATATGATTTCGAAATTCCAA
CCAATAACCATTTATCTGGCAACTTTGATTGCATGCGGTCAGCGATTTCT
GAAGCCCATGAGAAGTACACGCCACACCAAAGTTCATCCCTCAAAACTCG
ACAAGAATGTCACGACAGACGCCGCGATAACAAATCAACGCACTTCTCCC
TCTGGAACGGCCCGCTAGATAGGAAGATAACCGAACAAGAGTCTCAATTC
CGTGATCGACCGCCTCTTGATCCGAGCGTTCCACCAGCTGGAAAATATCA
ACCTGTAGGTCACAAATATCAGCATATTTTCTCAACATCAAAACCAACCA
TTCAAAACATTCCACAGTCATCCTTTATGATGGATTTCAAGAACCCTTCT
TCATATAAAACACCATACGATGCTATCAGCAAGAGCAGATCATGTCGCTG
GGAAGAACCATTAGCGAGCTATTTGTTCCATACTGGAGATGGTCAGTCAA
AAGatatACAGAAAACAACGACTGAACGACATTTTATTTCTCCTATCGAA
CAGTTGATGAAACAAAAGAGATTTCTCGGCTCCCGTACACTTTGACCCGA
CCACCAATACTTTCACCATTTTTAGTAGAATAGCTATTAGAATTTTTCTT
TGGTAATTTTATA
Run BLAST on NCBI

transcript from alignment at sc0000045:464869..466668+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004506 ID=TCONS_00004506|Name=TCONS_00004506|organism=Clytia hemisphaerica|type=transcript|length=1800bp|location=Sequence derived from alignment at sc0000045:464869..466668+ (Clytia hemisphaerica)
ACCGTATTGGCAAGGATCAGCACCAGATATACCATGACCAGCTCAATGCT
GGTCGAAATGAACTACCCAATCAACGCATgctttcaatgacgtcatccaa
TTTTCATAGACCGCCATTGGTTCACAATAAATATGATTTCGAAATTCCAA
CCAATAACCATTTATCTGGCAACTTTGATTGCATGCGGTCAGCGATTTCT
GAAGCCCATGAGAAGTACACGCCACACCAAAGTTCATCCCTCAAAACTCG
ACAAGAATGTCACGACAGACGCCGCGATAACAAATCAACGCACTTCTCCC
TCTGGAACGGCCCGCTAGATAGGAAGATAACCGAACAAGAGTCTCAATTC
CGTGATCGACCGCCTCTTGATCCGAGCGTTCCACCAGCTGGAAAATATCA
ACCTGTAGGTCACAAATATCAGCATATTTTCTCAACATCAAAACCAACCA
TTCAAAACATTCCACAGTCATCCTTTATGATGGATTTCAAGAACCCTTCT
TCATAGTAAGTGAATTATGTTGACCTACGAAAAAGTTTAACGGTTCGTTT
GCTCGTCACTAACTGCTCTTTAGATACCATCTTCCCACGTGTTTTGGACT
CAAAAGCCCTGtgatatttcaaatttcaagtttATCTTTCATTTTCGCAA
TCAATGAAGAACATCACATAATCAAGGACACAAAGACCACAAAGCTTTAC
TTTTATGTGGGCCACCTGATAAATTTAGGCGCTGGTTTAAGAAGTAACTT
AGAGCGTCATGATGAGGCTCTATTATGCCGCATATGATGAATTTAATGAC
TTAAGCAATCATCTTTGAAATCTTCTGCATATCCTTAACAGCTCTGAGAA
TGAAAAATACTTCCAATACTAAAAAAATACTTAGTAGTGAATCTACATCA
ATAAGCATCCCTGTATCACAGACCATCTGGCCAAAATTCATCTCAAGTTG
GAAAAATAGTTTAAAAGATTGAAATCTTGGGATTACTTGCTGGATTTTTG
AAACCCCAACACTTTGAAATAGTGTAGAATTCTCCCGTTGGCATTCGGCT
TCAACTCATTGACTTAGTTTGCACAGAGTCAGAGAGACAGAGGTGTTACA
TTCAATCATAAACCATCATAAATTCAATTCATTAGCCTTCTTCGACATGT
CAAAACTTTCATATTAATTTAATTCATGTTCTCAGTAAAACACCATACGA
TGCTATCAGCAAGAGCAGATCATGTCGCTGGGAAGAACCATTAGCGAGCT
ATTTGTTCCATACTGGAGATGGTCAGTCAAAAGGTATATCCAATTTTTAG
ATTGTCTCTTTCGAAAATAGGCCCGCTAATAATATGAAATGGTTGGTGTA
TTTACAAATAAGTTCTACTATAGGTATTATAATAGGTTTTGTTAGCGTAA
AAGGGTTTTATACCCTTGCAAGGGGTTATTAAgtcaaaaaaatcgaaaat
cggcttgagaaaatttttgaatattctcGGAAACTTAGGAAGATTTTTCG
tcgatttttccaaaatatttatcCTTTGAGAGAAACATTTACTGACTTAC
GATTCACTTCTAAGACGTACTGTCGTTTAGGACGATATTCAGCTGTCTCG
TAGTACAAGGATTTAAAAtgaatttcctttttcttttcagatatACAGAA
AACAACGACTGAACGACATTTTATTTCTCCTATCGAACAGTTGATGAAAC
AAAAGAGATTTCTCGGCTCCCGTACACTTTGACCCGACCACCAATACTTT
CACCATTTTTAGTAGAATAGCTATTAGAATTTTTCTTTGGTAATTTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002534XLOC_002534Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004506-exon-sc0000045-1491911889:464869..465373TCONS_00004506-exon-sc0000045-1491911889:464869..465373Clytia hemisphaericaexon
TCONS_00004506-exon-sc0000045-1510915933:464869..465373TCONS_00004506-exon-sc0000045-1510915933:464869..465373Clytia hemisphaericaexon
TCONS_00004506-exon-sc0000045-1575043694:464869..465373TCONS_00004506-exon-sc0000045-1575043694:464869..465373Clytia hemisphaericaexon
TCONS_00004506-exon-sc0000045-1491911889:466054..466151TCONS_00004506-exon-sc0000045-1491911889:466054..466151Clytia hemisphaericaexon
TCONS_00004506-exon-sc0000045-1510915933:466054..466151TCONS_00004506-exon-sc0000045-1510915933:466054..466151Clytia hemisphaericaexon
TCONS_00004506-exon-sc0000045-1575043694:466054..466151TCONS_00004506-exon-sc0000045-1575043694:466054..466151Clytia hemisphaericaexon
TCONS_00004506-exon-sc0000045-1491911889:466509..466668TCONS_00004506-exon-sc0000045-1491911889:466509..466668Clytia hemisphaericaexon
TCONS_00004506-exon-sc0000045-1510915933:466509..466668TCONS_00004506-exon-sc0000045-1510915933:466509..466668Clytia hemisphaericaexon
TCONS_00004506-exon-sc0000045-1575043694:466509..466668TCONS_00004506-exon-sc0000045-1575043694:466509..466668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:464869..466668 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.288993	0	0	0.00999801	0.0664222	0	0.235478	0.166987	0.138352	0.477328	0.353744	0	0.425794	0.872086	0.0868617	0.323949	0.346769	0.403304	0.996559	0.594628	0.258191	0.744639	0.328008	0.219082	76.351	27.1689	0.467983	0.593944	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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