TCONS_00004490 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004490
Unique Name	TCONS_00004490
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2093

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000045:310425..322930+
coding sequence from alignment at sc0000045:310425..322930+

transcript sequence

>TCONS_00004490 ID=TCONS_00004490|Name=TCONS_00004490|organism=Clytia hemisphaerica|type=transcript|length=2093bp
CTACTGCGTTCTTCTCACTTCTAAGTCCAAGTCGGTGTACGTCCAAGTCA
ACGTGAAGTGAAACACAAAGCTACAGTAGAAATCAGGGCAGACATTCAAT
CAGTTCAGAAAATAAGGAACGAAGCACAAGgATCCGGCCAATGAGGAGCG
TACCAGGCAGTAACAATGAAGGGATTTCTATTCATTTTGCTTGTGGTCTT
CATCATTTATTCACAAGCGCAAACATGTCCTGAACAATGCCAATGTTCAC
GATTGAAATGGACTTGCGGAGGACAAAACATCAATGATACTGTGTTACTT
GAAATTGCCCGTACTGGTGACCCACTTACAGCAGAAGAGTTAATACTGAA
AGTCAATTTGATTACTGATTTCCCAGCTGAAGCTTTCACCAAATTCAGCA
AGTTGGAGATTATTGAACTTGGACAAAATCTTCTGACAAAGCCACCAGCA
AATGTATCTGACTACATACCATCTGTCCACCGTTTTTCGAttgatcaaaa
caaaatcaGCAAGATTAGCAGGGATGATTTTCTCGGCTACCAAAATATCA
AGATCNAAATCAGCAAGATTAGCAGGAATGATTTTCTCGGCTACCAAAAT
ATCAAGATCCTTGACATTTTCAGCAACACTCTTACAGAGATTGAACCAAA
CATTTTTGAGAACCTACAAAACCTCCAAAAGGTCTTTGCAGAGAATAATC
AGATTGAAATGTTGAAAAACGGTACACTAAATGGTGCCGAGAACCTGCTG
TGGATTAGTTTTGATGGAAATGCTCTTGGGAAAATTGAAAGAGATGCGTT
TGCAGCGGCTACCAAGTTAGAAAGGTTATGGCTCAGTTATAATAAGCTGA
CCTCCCTCCCTGAAGGTGTGTTCCGGAACCAACGGTTAGTGATTCTGAAG
ATGAAAAGTAATCAATTTACAGACTTTCCACCAAAGACTTTCAATTCTCT
ATCCGTAGATCTTACCAACAACAGTTTGACAACGCTTCAAAAAAATTGGT
TTGCTTTGAAACCTAATGAGCTTTATCTTGAGCAGAACCCATTGCATTGT
GACTGTGCTTTATATAACACCATGCAATACTTTTTTAATGgtaatgataa
atttttaatttttgggaattGTAAAACACCAGCAGAGTTGAAGGATGATG
ATATTTACGAAGACCTTTACCGGACCAACAAACTGAAATGCACTGCTTGT
TCTTTGAATGAATGTCAGAATAATTCAACATGTAAAGTTGTCGATAAGCT
GGATTATACTTGCGTGTGCTCCGAGAAGAATCAGGGAAGATTTTGTCAGT
TCGAAAACGCATGTCTGGATAATCCTTGTCAACATAATGGAACATGTTTG
AAAATTGTAGACACCTTTATGTGCAACTGCAGTTCAGGATTTCTTGGAGA
GAAATGTGAGATTGAAAAACCTTGTTATTTCAACAATCCTTGCCAAAACA
ATGGAACATGTTTGAAAATTGTAGACACTTTTATGTGCAACTGCAGTTCA
GGATTTCTTGGAGAGAAATGTGAGATTGAAAAACCTTGTTATTTCAACAA
TCCTTGCCAAAACAATGGAACATGTTTGGAAATTGTAGACACTTTTATGT
GCAACTGCAGTTCAGGATTTCTTGGAGAGAAATGTGGGATTGAAAAAGCT
TGTTATTTCAACAATCCTTGCCAAAACAATGGAACTTGCCAACCTTTGGA
TGAAACTTCAGATAAATATCAATGTTTGTGTGTCGGTGGATATTCAGGAC
AAAACTGTGAGATCTTGGGAGAAgagacaaaaatcaaaattggttACATC
ATTCTGATCATTTTAGTTGCGTTGGCTTTGATTGCTTTATTGCTGGTCAT
TTTGTATTTGAGACGACGAACAACAAAAAAAGCTGAGATAACCGAGGATA
CTCCTTTGAAATCTACACAAAATACTTGATCGAGGTGATTTAATGAACAA
AAAACTCACTGCCATAGATTTTTACATgcatcaaatataaacaaaaagtg
aaaaataaagtaacaaaaagcattttttatcatttattttttaattaaca
tTGGTTTGGATTTTATTTCTTATATTGGTTACTATTATTGAAG

Run BLAST on NCBI

protein sequence of TCONS_00004490-protein

>TCONS_00004490-protein ID=TCONS_00004490-protein|Name=TCONS_00004490-protein|organism=Clytia hemisphaerica|type=polypeptide|length=587bp
MKGFLFILLVVFIIYSQAQTCPEQCQCSRLKWTCGGQNINDTVLLEIART
GDPLTAEELILKVNLITDFPAEAFTKFSKLEIIELGQNLLTKPPANVSDY
IPSVHRFSIDQNKISKISRDDFLGYQNIKIXISKISRNDFLGYQNIKILD
IFSNTLTEIEPNIFENLQNLQKVFAENNQIEMLKNGTLNGAENLLWISFD
GNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRNQRLVILKMKSNQ
FTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALY
NTMQYFFNGNDKFLIFGNCKTPAELKDDDIYEDLYRTNKLKCTACSLNEC
QNNSTCKVVDKLDYTCVCSEKNQGRFCQFENACLDNPCQHNGTCLKIVDT
FMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLKIVDTFMCNCSSGFLGE
KCEIEKPCYFNNPCQNNGTCLEIVDTFMCNCSSGFLGEKCGIEKACYFNN
PCQNNGTCQPLDETSDKYQCLCVGGYSGQNCEILGEETKIKIGYIILIIL
VALALIALLLVILYLRRRTTKKAEITEDTPLKSTQNT

Run BLAST on NCBI

transcript from alignment at sc0000045:310425..322930+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004490 ID=TCONS_00004490|Name=TCONS_00004490|organism=Clytia hemisphaerica|type=transcript|length=12506bp|location=Sequence derived from alignment at sc0000045:310425..322930+ (Clytia hemisphaerica)
CTACTGCGTTCTTCTCACTTCTAAGTCCAAGTCGGTGTACGTCCAAGTCA
ACGTGAAGTGAAACACAAAGCTACAGTAGAAATCAGGGCAGACATTCAAT
CAGTTCAGAAAATAAGGAACGAAGCACAAGGTAACAGTTTATTTTGTTTC
TATTGATAGCAAAATTAGAGACACTAAAATTCTCTCTgtgtaactttaaa
aaaattacattgagGGCAAACCCTTATAGCTTTTTAGGACCCATGACATC
TTTTACAGTGAAGTCgggcaacttgcatcagtggagggaaacttgcatag
ccatcaaatggcTAACCAAtctaagcagcaaaatttcaaaacaaatcaac
taCGCAGTTCCGCTctcgctcgcagctctactttaccatttttgttttga
tttaactttgtaccgtcaactgctctaaataAAATGGAGCATTcggtcaa
aacatgggatgggactgttgatatctggcctgtatttttactataaatat
aaaaactagattgtaaggatgattctaaaaaagaatagccgtTTTTTTAG
ACGACTACGTTATAATTAGTTTTCGGTTTataattgaatttgaaattcgt
caaaattttaaattgggTCAATTGGactttgcttgtgacgtcagtttttg
aGTCCTAAAAGATTTTCCTAGGCCTTAGCAAAAACCCCACTTCGCAAAAA
ACTCTTTAAATACTTCAGTCTTTGAAATTGACCAGGTTTGGTCGCGTtgc
ataaaagatgtcacggcAGGTCCTAAGGGTTTGTCCCTTACTATATATTA
TAGTGTTCATAAtggagatgaaatttggtagCTATATGGAGTCTCCTTGT
AACAAGTCAAAAGTAGAAGAAacaagttttttgatacatcaacCTGGTCA
GAAGTTCTGGGACACTTTCATTATTGGAATATCCTAACCTCATTGGGTTG
GGATCTCTCTAATCAAGATATTCTGGATCAAAAGGAAAAGGAACTTAAAA
TTTAACAGAATGGACCATCGTTTTGCATAATTCCGCTTACGATACTGCAA
TTCCACTGGGTCGTTAATAAAGAATGGAAATAACTCTTGTCTaatgctca
ttccgacattttaaattttccgggggttttgctgtttgggattgtttagg
tcagggttgctagtaacggcttttTTCAGCCCCGGGTGCATTTACAGCGA
CCTGGGCCCCGCCCGGTTGCTTGTAACGGCGCCGAAGTTGCAGCTTGGGT
AAAAANTTTGCTGTTTGGGATTgtttaggtcagggttgctagtaacggct
tgtcactgtgccgggtgcatactcggcgccctgagccccgcagggttgct
agtaacggctcgaatttcagtcaggttaaaaaaggggcaattttacccat
attataatagcATTACCCCCGTCTTCTTATTCATtcaataagtatttcca
aattttgtgttctgctgtgcgagtgtggctcaacggatagcgcgctgggt
ttctgatcagaaactctttcatttggtggNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCagttaaaacactttaaaatagtcagaaaacatagtaaata
agtCAGAAAGGTCACCAGGGGGTCAGAAAAGAGCCTCAGAGAAGATAGGC
AGAAATGAGAAGTCGATGTCGGAACGAGCAATAGACAAGAGTTCTTTCCA
TAAAGAATAGCTTGCTTTGTTCCTGTCACCCCGACTTTGAAAAAGACAat
cggtcggtcggtcagtTGGTCAGGGTAAataaaattgtatcataaatTAA
CAGCAGGACTTAGGTCAGCATTTgcatccgccatcttgtttttacGTTAC
TTTGAAAATAGCACTCGGTTTCATTAAGTAAAGTATTTCCGCTTGTTCCA
AATAATGAAAAACAGGAGAAAAAATCTGTATACTGTATACAAACTGGAAT
TCAGGCTGAGTTTGAACAAAAGTCTGCTCAAGCACCTTTAACTACGCtac
attttcaaaattggtaAACAGGGGAGAGTGATGTTGAGGCTCCAACCACC
AGATTGGCTTCTAttaattgtaaaaaaatgagatGAGGCCTGCAGATTAG
GCCTGGGAAAAGTTTCTATGGccaaaaaatagatttttgaagcaAAGCTC
CTCCTTTGGGGTTGCCCAAAGGAGGTTATTTGTTTACTCTCCAGACTTAC
CAAATCAGGTTACAACTTTCAATCCCATGTTGAAAATTGATTGTTTTAAA
ATTGTGAGATTTTCATTATATTATGCATGTcagcaatttttttgttttta
attgcACTTTAATGTCTtcaaaagctttgcaaaagtttgttattttttct
ttcagtcgTTTGTCAAACAATGCGAAAGTGACGTTTTTGTTTCTTGGGCT
TCAGACCTAATATGTTGGATCTATAACTTCAAAAGTTGGGCTTTGTATTT
GTCTTGGGCTTGGTATTTATTATAAATCAAATAGAGAAAGATTGTGTCAA
CTCTAGGGCTGCCTAGGGTACCAACACTAACAGGTTTTAAATAGTGACTA
TCTTGAGTGCCAGGCAACTCAGGACCACTAAAAAAGGCAGACTAGGGGTG
GTGTCAGACTGGCAATAGTCAAATACACTTAGTACATTTAGGTACTAACT
GTTGAAGGGTGGTGGGTGTActtttaaatttacaattttgtaGTAAGTCA
TCATGATGTCTTGTACCAACTACATGACCCCCTGATATTATAGAGGAGTT
TAATTTTGATCTGTGATTCTTTATTCAAATTCAATGCGTAGTCACTCAAC
ATTAGGTCTCCAAATTTCAAATGAGATGTATGATGTATTGGTTATTATTG
GGTATCAGtgatttcaaaattatattttttggtcATCTCATAGCtgtaat
gaattttttttttctttgtaggtaacaaaaggttttaaaaatttacctat
tttcttatttatataaTGCACAATTAAACATCCATTGTTCCCAGAAGCTG
ATATTACTATGTACAATGAATAAATTTCTGAAGAATTCATTTTTAACAGT
TATTGGGATACTATTAGTGCTCTTTACCACTTGtcaatcatgtccaaaac
aatGTGATTGCTCACAGTTTAAATGGAAATGCAGTGCCCAAAATATCACT
GATGCAATATTATTAAGAGACATTGCCAATGTTAGTAACCCATGGACAGC
AAAAGGGTTGATATTGAAAGACAATTTAATCACTCATTTCCCATCAGaat
attttgtcaattttacaaATTTGACTGAAATTGACCTTACAAGAAATTTA
CTAACAAAACCTCCAGCAAACTTATCTGTTTACATTCCATCAATTGTTAA
CTTATGCATCAGTGAAAATATAATCAGGGAAATAACCAAAGATGATTTTA
TGGGATATCAAAATGTTAAAGAGGTAAACATTTCAAACAACATAATTATG
GAACTGGAATCTGGTATTTTTAGCAACTTACCAAAATTACAAAAGGTTTT
CATAGATAACAATtctataaaacttttgaaaaatggggtCCTTGATGATG
CTATGGAACTTCTTTGGATCAGTTTTAATGGGAATGGAATTGAGAAAATT
GAAAAGGATGTCTTTAAATTACATGTGAAGTTAGATAGACTGTGGTTCAA
TAACAATAACTTGAGTGAACTTCCCGAGGGTCTACTAAAAAACCAACACT
TGAATCGTTTGGAAATGCAAAATAACCAATTTACAGACTTTCCAGCAAAT
GCTTTCAATTCGCAATTAGTAAAACTACTGAATAATAGATTGACAACACT
TCGAAAAGAATGGTTTCTTTCCTCGCCAGATGATCTTGATGTTGAAGGAA
ACCCATTACATTGTGACTGCACATTGTACAATGTTATACAAGCTCTTATC
TCTGATAACAACAAATTCGATATATTTGGTAATTGTCGATCACCGCCACA
TGTGAAAGATATTTATGAGGACATTCAGACTAGAAACAAGCTGAATTGCA
CTGCCTGTTCTGTGAATAATTGTCAGAACAATTCAACATGTCAAATCATA
AACGAGACATCATACAATTGCTCCTGTTCTGATGAATTTCAAGGAAGATT
TTGTCAGTATGAGAATCAATGTCTACAAAGTCCTTGTGGAAATAATGGAA
CATGTTTGCTGTCTAATGATTCATTTGTTTGTAGTTGTATGAACGAGTTT
GGGGGAACGAGATGTCACTTAATCCAATTATGTTACTCGGATAAACCATG
CGAGAATTCAGGGCAGTGTAATGTTCACAAGGGGACTACCATGAACACTT
GTACTTGCTTGTTCGGTTATTTGGGGTCACGTTGTCAAATAAATTTGGGT
TTCATTGTGTtggtttgtttgattgtttttgcaACTCTGATTGTGGTTTG
TATTCTTTGTTTTTACAAACCAAAACACGGTGATATATTCATTGTTGAAA
AAGGACATTTACTATCAAAGATTGGTGTTGATAATCCAAGTTTCAGATAT
TCTGGCCAAAGTAGTACATCACAAAATTAAAGATACCTGAAGATAAGGTt
ttatttcactgaagattgccattctggatggcatgaaactttgagtataa
AATTAAACTAAATCGTTTTCTTCACTCAAACTAGGATACCTGACAGTACC
TGAAGATATTcataaagtaaaaaatatttatttattttattttattttat
tatttaaattttttttaatgagagATTTGAATTTTCTCTTGCCTCGTTTC
CAAACTTGAGCATTTTTATTAATAATAATGCTATACAAGTGAACCGCTCT
TTGTttggtttacaattttcttaagatagagttttctcctagggctcccc
ctgactttgaatttgaagtttGCGTCTTTTATATTGAAGTATTCATTTGT
TTGGCTTTCATACACCACTCTTTAATTgtcttcctttcacttttcACTTA
GTCTTCTGCTACCCGGAAGGGCAATCTTACTCCTTTGTGATTGCTCTTAA
CAGTATTCTTGTCTTCTTCGTTTGCAAATCGGAATTTTATTGGTCGATAG
CGTTTCTCATCTCCTCTTTCCTTCCaaaattttccgattctttgagtttt
ttcattttcattctttATATTCCTTAAGCGTCATACCTaagatgttttca
ttttttgatattCTTCGTCGTAGATTTTGGCGACTGCTGCGTAGCTTTCT
TTTCAATGCTGTCTTCCATTTTCTTTTCTATTGTTGCCATTCTGATATCA
AAACTATCCTTCATTTCACTGATCTTAGTATTCACGTCTTTGAACTTTAG
TTGAGTGATTTCTACGTCCTGGGCTTTCATTATGTTTTTGTAAGCTTTTA
TCTCCTTTCGGAATCCTGAAACTGTTGATGTCTCATGTGAATTGACTCAT
TCTAATAGATCAGGAGTGATCACGACACAGTTTTGACAAATGAATGCTCT
CGATTTGTATGCTAGACATAACTGGATTTGATAGATGGGGAGCTTTGAAC
AAATGTAGTGCACGATTCGATTGCACTTCTTACATTCAAGTGTGTCTTTG
GATCTTCCTTCTTCACTTGTAATACATTCAGATGGGCTGCAAAGGTCGTA
AATTGATGCTTGATTCGGtagtttttgtagattttcctgaattttctccT
ATATTTACATCTTTTTACAACACATCTGTTTTATTGATtcgtttttattg
aatagttttatttattttataatatatttatTGTTTATATCTTCCATTTG
GTCATTTGAATCAcataattgtacaaaaagtaTTATTTAATGTTTCGACA
TTTTACTCCCATACTCTCAGATGTCTTATAAATTGGCCCTGTGTTTGTGA
TTCATAcaaatgttatacatatttcCCTTGTCAAtctttgacaatttttt
cagcTGTTAAAACACCATTTAAGTACTTTATTTTGCTCTATATAGCCTGG
TTATTTACTTAATTTAGGGTATTCACTATAGTAAAATACAAGCCCCCCTc
attaatacacgttttttttttattagaacctagtttataagaacatatag
gctgaaattcgtcgaaaaattaagaacatcttaagaacatgcccagcctc
agtttggataaaaatgacaagaaattacaattttttcctctttttaagca
gttttaaccgaatttaggggtggatcttcaaaagtcgagagtcaaatatt
gtccaaattttgccaaatttaagtgctctttatttcatattattatcata
ttgtcgatttagagtagtctgaaaaattaagaacgcgtttaagaacattt
taggctgaaagttgctaaaaaaataagcacatccaggctcagccaaattt
taggtgttctaataaaaaaaaaaacgtgtaaagacATCCCATCCCCGTtc
attaaaatttagaaaagttttcttaaccctacctactgagagggggggca
caaagtgccccccctgttagaaaattggctggcattttttaactagtgag
gctatgaagctgaaattttatgacttttcatcaaattttatggggaatgt
tttgtgtaaaaattttttctcattggtcaattattttagtcccaatgaca
ggtttgtcggtgaccactaccatcccacaactgcagcgcaggctattttg
ctcttttttatgtgCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTagca
gcaaaaaataaatataaatatgacaaaaaaaagtatcaccgacttgaaaa
agttaaaatgttctgattttacgcggttttgaaaatttaaaacattttct
tcggtTTTGGCGCGCTATAGTTGAACGTCAcgacaaaattgttgatttag
attttaGTTTCCATTTAGTACTttgtaaaagctttcaaataaaagcaaaa
tgaaggaGAATGTGTTTCTCAGTCTGTTTCAAtagcaattttaagaaaca
tcattttttttgagttttttgggtgatttttgccaattgttgatacaatt
gatgacgtcatcaaaaatcgcaatcaattttcaaaaaaattttttaataa
atttatttgTTATAGGTTCAAGCattgctgtaccaaatttcatgaccaaa
taatgttcctatcctaagttatccacggggggcactatgtgccccccctt
tcagttctaagggacccaaatagctctcagtaggtagggttaatCCCCCA
TTTAATCTAACCCCTCCAATTGTTAGGCACTTCTGTAATgagtaatattt
tattttttcatgattgtCTCTGTTTGGAGGAATTTGGGAATTTTACATGG
TACCTGAAATACATATATTTATATGATAGAAATGTTCGTTATATTCACTT
TCtgaatgataaaatttttattttttgaaaaaatctaagaaaaatgTCAT
TCTTATCACACCCTAAAGCTCTTTTATCAGCTCTTTATTATCAGTCAATG
AAATTACAAATAcaaattacttttgatagaatttgactGAGTTGGTGATT
TCATGCTTGTTGTTAAGATAATAATGAGTGGAATATTGTTGGCAAATTTG
GACGGAACTTCAACTAACCTTATTAATTTTAATTAGCCAATCAGCAAAAC
CCATCTGCGTTTGGAACTGTTTTGAAATAAGAATACCTTTCATCTTGATA
TAAGGAGATTTCTTTTCAATCCAATAAGTTATAGGGCTTTACGAATCAAT
TAGACCAAATTAAATACTGGTGCTCTTAGCTCGAACATTTTTTCTGAACG
AGTTGAATACGAAGGAGTAGTACCCTACAAGCACTGTTaacaaatttctg
aaaattccAAATCTTCCTTGAAATATTTAAAGTCTGTCTAGAGTGCAACC
AGTCAGCTAATACCgtctatttttctttaatttaggATCCGGCCAATGAG
GAGCGTACCAGGCAGTAACAATGAAGGGATTTCTATTCATTTTGCTTGTG
GTCTTCATCATTTATTCACAAGCGCAAACATGTCCTGAACAATGCCAATG
TTCACGATTGAAATGGACTTGCGGAGGACAAAACATCAATGATACTGTGT
TACTTGAAATTGCCCGTACTGGTGACCCACTTACAGCAGAAGAGTTAATA
CTGAAAGTCAATTTGATTACTGATTTCCCAGCTGAAGCTTTCACCAAATT
CAGCAAGTTGGAGATTATTGAACTTGGACAAAATCTTCTGACAAAGCCAC
CAGCAAATGTATCTGACTACATACCATCTGTCCACCGTTTTTCGAttgat
caaaacaaaatcaGCAAGATTAGCAGGGATGATTTTCTCGGCTACCAAAA
TATCAAGATCNAAATCAGCAAGATTAGCAGGAATGATTTTCTCGGCTACC
AAAATATCAAGATCCTTGACATTTTCAGCAACACTCTTACAGAGATTGAA
CCAAACATTTTTGAGAACCTACAAAACCTCCAAAAGGTCTTTGCAGAGAA
TAATCAGATTGAAATGTTGAAAAACGGTACACTAAATGGTGCCGAGAACC
TGCTGTGGATTAGTTTTGATGGAAATGCTCTTGGGAAAATTGAAAGAGAT
GCGTTTGCAGCGGCTACCAAGTTAGAAAGGTTATGGCTCAGTTATAATAA
GCTGACCTCCCTCCCTGAAGGTGTGTTCCGGAACCAACGGTTAGTGATTC
TGAAGATGAAAAGTAATCAATTTACAGACTTTCCACCAAAGACTTTCAAT
TCTCTATCCGTAGATCTTACCAACAACAGTTTGACAACGCTTCAAAAAAA
TTGGTTTGCTTTGAAACCTAATGAGCTTTATCTTGAGCAGAACCCATTGC
ATTGTGACTGTGCTTTATATAACACCATGCAATACTTTTTTAATGgtaat
gataaatttttaatttttgggaattGTAAAACACCAGCAGAGTTGAAGGA
TGATGATATTTACGAAGACCTTTACCGGACCAACAAACTGAAATGCACTG
CTTGTTCTTTGAATGAATGTCAGAATAATTCAACATGTAAAGTTGTCGAT
AAGCTGGATTATACTTGCGTGTGCTCCGAGAAGAATCAGGGAAGATTTTG
TCAGTTCGAAAACGCATGTCTGGATAATCCTTGTCAACATAATGGAACAT
GTTTGAAAATTGTAGACACCTTTATGTGCAACTGCAGTTCAGGATTTCTT
GGAGAGAAATGTGAGATTGAAAAACCTTGTTATTTCAACAATCCTTGCCA
AAACAATGGAACATGTTTGAGAATTGTAGACACTTTTATGTGCAACTGCA
GTTCAGGATTTCTTGGAGAGAAATGTGAAATTGAAAAAGCTTGTTATTTC
AACAATCCTTGCCAAAACAATGGAACTTGCCAACCTTTGGATGAAACTTC
AGATAAATATCAATGTTTGTGTGTCGGTGGATATTCAGGACAAAACTGTG
AGATCTTGGGAGAAgagacaaaaatcaaaattggttACATCATTCTGATC
ATTTTAGTTGCGTTGGCTTTGATTGCTTTATTGCTGGTCATTTTGTATTT
GAGACGACGAACAACAAAAAAAGCTGAGATAACCGAGGATACTCCTTTGA
AATCTACACAAAATACTTGATCGAGGTGATTTAATGAACAAAAAACTCAC
TGCCATAGATTTTTACATgcatcaaatataaacaaaaagtgaaaaataaa
gtaacaaaaagcattttttatcatttattttttaattaacatTGGTTTGG
ATTTTATTTCTTATATTGGTTACTATTATTGAAGGCATTAGAATTTGAGT
TGCCTATTATTTCCACTAATTTCGGAACAATATTCATGATTATAGTTTCG
AAAGCTCTTTGATAAtggcttttttttttcaatgagaTTGCATAAAGCCT
TTTACATACCTCATCTGGATAAAGAAAGTGTTTTTTTATTGACCCATTCT
TTAGGGAACGTAATATAAACGTAATACATACAAAAATTAGGGAATATCTT
AAGGGTAATGtatctttcatttttgaaactaatttcgttattatttttac
atatttggTTATTTGTATATTATCAACTTTAATATTAATATCAGAGGCTT
GgggtttattttgaaaatattcactGAAAATGAACGAAAGCATCCagcga
ggacctttttttaaacatctgtttcccaggcatagccttcctggaaattt
gatctgttggccaaaaGTTCTGAAGTTCCAAatatcttattcctagaaat
aaatctgtttctcctccaaacctaaatttttaatctaaaagtatcttccc
tagaaaatttggtctgtttccacaattttcagaagtaaaattttgatctg
ttctcccaAGCTTATTATAAGGaataggatatctgtttcccctcctggaa
attttcatctgtttcccttgctctttgtgattgatatctgttttccatca
gaaagttcaatctgtttccaatgcaatatcatctttttggaaacagatat
ctgtttcccaatttatcatgtcatctcctagaaatattgatctgtttctc
tctgatgacgtcatcagctggagcNNNNCTTGAAATTGCCCATACTGGTG
ACCCACTTACAGCAGAAGAGTTAATACTGAAAGTCAATTTGATTACTAAT
TTCCCAGCTGAAGCTTTCACCAAATTCAGCAAGTTGGAGATAATTGAACT
TGGACAAAATCTTCTGACAAAGCCACCAGCAAATGTATCTGACTACATAC
CATCTGTCCACCGTTTTTCGAttgatcaaaacaaaatcaGCAAGATTAGC
AGGGATGATTTTCTCGGCTACCAAAATATCAAGATCCTTGACATTTTCAG
CAACACTCTTACAGAGATTGAACCAAACATTTTTGAGAACCTACAAAACC
TCCAAAAGGTCTTTGCAGAGAATAATCAGATTGAAATGTTGAAAAACGGT
ACACTAAATGGTGCCGAGAACCTGCTGTGGATTAGTTTTGATGGAAATGC
TCTTGGGAAAATTGAAAGAGATGCGTTTGCAGCGGCTACCAAGTTAGAAA
GGTTATGGCTCAGTTATAATAAGCTGACCTCCCTCCCTGAAGGTGTGTTC
CGGAACCAACGGTTAGTGATTCTGAAGATGAAAAGTAATCAATTTACAGA
CTTTCCACCAAAGACTTTCAATTCTCTATCCGTAGATCTTACCAACAACA
GTTTGACAACGCTTCAAAAAAATTGGTTTGCTTTGAAACCTAATGAGCTT
TATCTTGAGCAGAACCCATTGCATTGTGACTGTGCTTTATTTAACACCAT
GCAATACTTTTTTAATGgtaatgataaatttttaatttttgggaattGTA
AAACACCAGCAGACTTGAAGGATGATGATATTTACGAAGACCTTTACCGG
ACCAACAAACTGAAATGCACTGCTTGTTCTTTGAATGAATGTCAGAATAA
TTCAACATGTAAAGTTGTCGATAAGCTGGATTATACTTGCGTGTGCTCCG
AGAAGAATCAGGGAAGATTTTGTCAGTTCGAAAACGCATGTCTGGATAAT
CCTTGCCAAAATAATGGAACATGTTTGAAAATTGTAGACACTTTTATGTG
CAACTGCAGTTCAGGATTTCTTGGAGAGAAATGTGAGATTGAAAAACCTT
GTTATTTCAACAATCCTTGCCAAAACAATGGAACATGTTTGGAAATTGTA
GACACTTTTATGTGCAACTGCAGTTCAGGATTTCTTGGAGAGAAATGTGG
GATTGAAAAAGCTTGTTATTTCAACAATCCTTGCCAAAACAATGGAACTT
GCCAACCTTTGGATGAAACTTCAGATAAATATCAATGTTTGTGTGTCGGT
GGATATTCAGGACAAAACTGTGAGATCTTGGGAGAAgagacaaaaatcaa
aattggttACATCATTCTGATCATTTTAGTTGCGTTGGCTTTGATTGCTT
TATTGCTGGTCATTTTGTATTTGAGACGACGAACAACAAAAAAAGCTGAG
ATAACCGAGGATACTCCTTTGAAATCTACACAAAATACTTGATCGAGGTG
ATTTAATGAACAAAAAACTCACTGCCATAGATTTTTACATgcatcaaata
taaacaaaaagtgaaaaataaagtaacaaaaagcattttttatcatttat
tttttaattaacatTGGTTTGGATTTTATTTCTTATATTGGTTACTATTA
TTGAAG

Coding sequence (CDS) from alignment at sc0000045:310425..322930+

>TCONS_00004490 ID=TCONS_00004490|Name=TCONS_00004490|organism=Clytia hemisphaerica|type=CDS|length=3528bp|location=Sequence derived from alignment at sc0000045:310425..322930+ (Clytia hemisphaerica)
ATGAAGGGATTTCTATTCATTTTGCTTGTGGTCTTCATCATTTATTCACA
AGCGCAAACATGTCCTGAACAATGCCAATGTTCACGATTGAAATGGACTT
GCGGAGGACAAAACATCAATGATACTGTGTTACTTGAAATTGCCCGTACT
GGTGACCCACTTACAGCAGAAGAGTTAATACTGAAAGTCAATTTGATTAC
TGATTTCCCAGCTGAAGCTTTCACCAAATTCAGCAAGTTGGAGATTATTG
AACTTGGACAAAATCTTCTGACAAAGCCACCAGCAAATGTATCTGACTAC
ATACCATCTGTCCACCGTTTTTCGAttgatcaaaacaaaatcaGCAAGAT
TAGCAGGGATGATTTTCTCGGCTACCAAAATATCAAGATCNAAATCAGCA
AGATTAGCAGGAATGATTTTCTCGGCTACCAAAATATCAAGATCCTTGAC
ATTTTCAGCAACACTCTTACAGAGATTGAACCAAACATTTTTGAGAACCT
ACAAAACCTCCAAAAGGTCTTTGCAGAGAATAATCAGATTGAAATGTTGA
AAAACGGTACACTAAATGGTGCCGAGAACCTGCTGTGGATTAGTTTTGAT
GGAAATGCTCTTGGGAAAATTGAAAGAGATGCGTTTGCAGCGGCTACCAA
GTTAGAAAGGTTATGGCTCAGTTATAATAAGCTGACCTCCCTCCCTGAAG
GTGTGTTCCGGAACCAACGGTTAGTGATTCTGAAGATGAAAAGTAATCAA
TTTACAGACTTTCCACCAAAGACTTTCAATTCTCTATCCGTAGATCTTAC
CAACAACAGTTTGACAACGCTTCAAAAAAATTGGTTTGCTTTGAAACCTA
ATGAGCTTTATCTTGAGCAGAACCCATTGCATTGTGACTGTGCTTTATAT
AACACCATGCAATACTTTTTTAATGgtaatgataaatttttaatttttgg
gaattGTAAAACACCAGCAGAGTTGAAGGATGATGATATTTACGAAGACC
TTTACCGGACCAACAAACTGAAATGCACTGCTTGTTCTTTGAATGAATGT
CAGAATAATTCAACATGTAAAGTTGTCGATAAGCTGGATTATACTTGCGT
GTGCTCCGAGAAGAATCAGGGAAGATTTTGTCAGTTCGAAAACGCATGTC
TGGATAATCCTTGTCAACATAATGGAACATGTTTGAAAATTGTAGACACC
TTTATGTGCAACTGCAGTTCAGGATTTCTTGGAGAGAAATGTGAGATTGA
AAAACCTTGTTATTTCAACAATCCTTGCCAAAACAATGGAACATGTTTGA
AAATTGTAGACACTTTTATGTGCAACTGCAGTTCAGGATTTCTTGGAGAG
AAATGTGAGATTGAAAAACCTTGTTATTTCAACAATCCTTGCCAAAACAA
TGGAACATGTTTGGAAATTGTAGACACTTTTATGTGCAACTGCAGTTCAG
GATTTCTTGGAGAGAAATGTGGGATTGAAAAAGCTTGTTATTTCAACAAT
CCTTGCCAAAACAATGGAACTTGCCAACCTTTGGATGAAACTTCAGATAA
ATATCAATGTTTGTGTGTCGGTGGATATTCAGGACAAAACTGTGAGATCT
TGGGAGAAgagacaaaaatcaaaattggttACATCATTCTGATCATTTTA
GTTGCGTTGGCTTTGATTGCTTTATTGCTGGTCATTTTGTATTTGAGACG
ACGAACAACAAAAAAAGCTGAGATAACCGAGGATACTCCTTTGAAATCTA
CACAAAATACTTGAATGAAGGGATTTCTATTCATTTTGCTTGTGGTCTTC
ATCATTTATTCACAAGCGCAAACATGTCCTGAACAATGCCAATGTTCACG
ATTGAAATGGACTTGCGGAGGACAAAACATCAATGATACTGTGTTACTTG
AAATTGCCCGTACTGGTGACCCACTTACAGCAGAAGAGTTAATACTGAAA
GTCAATTTGATTACTGATTTCCCAGCTGAAGCTTTCACCAAATTCAGCAA
GTTGGAGATTATTGAACTTGGACAAAATCTTCTGACAAAGCCACCAGCAA
ATGTATCTGACTACATACCATCTGTCCACCGTTTTTCGAttgatcaaaac
aaaatcaGCAAGATTAGCAGGGATGATTTTCTCGGCTACCAAAATATCAA
GATCNAAATCAGCAAGATTAGCAGGAATGATTTTCTCGGCTACCAAAATA
TCAAGATCCTTGACATTTTCAGCAACACTCTTACAGAGATTGAACCAAAC
ATTTTTGAGAACCTACAAAACCTCCAAAAGGTCTTTGCAGAGAATAATCA
GATTGAAATGTTGAAAAACGGTACACTAAATGGTGCCGAGAACCTGCTGT
GGATTAGTTTTGATGGAAATGCTCTTGGGAAAATTGAAAGAGATGCGTTT
GCAGCGGCTACCAAGTTAGAAAGGTTATGGCTCAGTTATAATAAGCTGAC
CTCCCTCCCTGAAGGTGTGTTCCGGAACCAACGGTTAGTGATTCTGAAGA
TGAAAAGTAATCAATTTACAGACTTTCCACCAAAGACTTTCAATTCTCTA
TCCGTAGATCTTACCAACAACAGTTTGACAACGCTTCAAAAAAATTGGTT
TGCTTTGAAACCTAATGAGCTTTATCTTGAGCAGAACCCATTGCATTGTG
ACTGTGCTTTATATAACACCATGCAATACTTTTTTAATGgtaatgataaa
tttttaatttttgggaattGTAAAACACCAGCAGAGTTGAAGGATGATGA
TATTTACGAAGACCTTTACCGGACCAACAAACTGAAATGCACTGCTTGTT
CTTTGAATGAATGTCAGAATAATTCAACATGTAAAGTTGTCGATAAGCTG
GATTATACTTGCGTGTGCTCCGAGAAGAATCAGGGAAGATTTTGTCAGTT
CGAAAACGCATGTCTGGATAATCCTTGTCAACATAATGGAACATGTTTGA
AAATTGTAGACACCTTTATGTGCAACTGCAGTTCAGGATTTCTTGGAGAG
AAATGTGAGATTGAAAAACCTTGTTATTTCAACAATCCTTGCCAAAACAA
TGGAACATGTTTGAAAATTGTAGACACTTTTATGTGCAACTGCAGTTCAG
GATTTCTTGGAGAGAAATGTGAGATTGAAAAACCTTGTTATTTCAACAAT
CCTTGCCAAAACAATGGAACATGTTTGGAAATTGTAGACACTTTTATGTG
CAACTGCAGTTCAGGATTTCTTGGAGAGAAATGTGGGATTGAAAAAGCTT
GTTATTTCAACAATCCTTGCCAAAACAATGGAACTTGCCAACCTTTGGAT
GAAACTTCAGATAAATATCAATGTTTGTGTGTCGGTGGATATTCAGGACA
AAACTGTGAGATCTTGGGAGAAgagacaaaaatcaaaattggttACATCA
TTCTGATCATTTTAGTTGCGTTGGCTTTGATTGCTTTATTGCTGGTCATT
TTGTATTTGAGACGACGAACAACAAAAAAAGCTGAGATAACCGAGGATAC
TCCTTTGAAATCTACACAAAATACTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002530	XLOC_002530	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004490-protein	TCONS_00004490-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004490-exon-sc0000045-1491911889:310425..310554	TCONS_00004490-exon-sc0000045-1491911889:310425..310554	Clytia hemisphaerica	exon
TCONS_00004490-exon-sc0000045-1510915933:310425..310554	TCONS_00004490-exon-sc0000045-1510915933:310425..310554	Clytia hemisphaerica	exon
TCONS_00004490-exon-sc0000045-1575043694:310425..310554	TCONS_00004490-exon-sc0000045-1575043694:310425..310554	Clytia hemisphaerica	exon
TCONS_00004490-exon-sc0000045-1491911889:318660..319986	TCONS_00004490-exon-sc0000045-1491911889:318660..319986	Clytia hemisphaerica	exon
TCONS_00004490-exon-sc0000045-1510915933:318660..319986	TCONS_00004490-exon-sc0000045-1510915933:318660..319986	Clytia hemisphaerica	exon
TCONS_00004490-exon-sc0000045-1575043694:318660..319986	TCONS_00004490-exon-sc0000045-1575043694:318660..319986	Clytia hemisphaerica	exon
TCONS_00004490-exon-sc0000045-1491911889:322295..322930	TCONS_00004490-exon-sc0000045-1491911889:322295..322930	Clytia hemisphaerica	exon
TCONS_00004490-exon-sc0000045-1510915933:322295..322930	TCONS_00004490-exon-sc0000045-1510915933:322295..322930	Clytia hemisphaerica	exon
TCONS_00004490-exon-sc0000045-1575043694:322295..322930	TCONS_00004490-exon-sc0000045-1575043694:322295..322930	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000045	supercontig	sc0000045:310425..322930 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.8261	55.7288	36.6694	40.8496	99.2387	76.5443	38.2294	42.8882	32.8422	31.0498	25.7559	19.7056	15.7642	15.0714	40.6182	47.6293	10.6996	18.6215	20.4705	36.8495	13.4847	12.2864	46.0548	46.9041	7.44728	10.3468	90.5664	67.9705	49.6736	51.5128

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR001881	EGF-like_Ca-bd_dom
IPR000742	EGF-like_dom
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt
IPR013032	EGF-like_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005515	protein binding

Blast

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BLAST of TCONS_00004490 vs. Swiss-Prot (Human)
Match: SLIT2 (Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 9.938e-37
Identity = 117/384 (30.47%), Postives = 180/384 (46.88%), Query Frame = 1

Query:  667 QNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERLWLSYNKLTSLPEGVFRN-QRLVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFALKPNELYLEQNPLHCDCALYNTMQYFFNGNDKFLIFGNCKTPAELKDDDIYEDLYR---------TNKL-KCTACSLNECQNNSTCKVVDKLD-YTCVCSEKNQGRFCQFE-NACLDNPCQHNGTC-LKI--VDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLKIVDTFMCNCSSGFLGEKCEIEKPCYFN---NPCQNNGTCLEIVDTFMCNCSSGFLGEKCGIEKACYFNNPCQNNGTCQPLDETSDKYQCLCVGGYSGQNCE 1761
            +++ +++ + NQ  ++    L+  ++L  I    N +  +   +F+  T+L  L LSYN+L  +P   F   + L +L +  N  +  P   FN LS                AL  + L +  NPL+CDC +   +  +     K      C  P E+ D  +     +          N L KC  C  N C+N+ TC   D +D Y C C    +G+ C    +AC+ NPC+H GTC LK    D F C C+ GF GE CE+      +N C+NN TC+  ++ + C C   + GE CE EK  +     NPCQ++  C+     F C+C+ G++GE C I+     +N C+N   C    +  + Y C+C  GYSG  CE
Sbjct:  754 RDVTELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS----------------AL--SHLAIGANPLYCDCNM-QWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNS-DPVDFYRCTCPYGFKGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCEDNDCENNSTCVDGINNYTCLCPPEYTGELCE-EKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPGYVGEHCDIDFDDCQDNKCKNGAHCT---DAVNGYTCICPEGYSGLFCE 1112

HSP 2 Score: 103.219 bits (256), Expect = 2.096e-22
Identity = 102/397 (25.69%), Postives = 163/397 (41.06%), Query Frame = 1

Query:  592 YQNIKILDIFSNTLTEIEPNIFENLQNLQKVFAENNQIEMLKNGTLNGAENLLWISFDGNALGKIERDAFAAATKLERL--------------WLS-YNKLTSLPEGVFR------NQRLVILKMKSNQFTDFPPKTFNSLSVDLTNNSLTTLQKNWFAL--KPNELYLEQNPLHCDCALYNTMQYFFNGND-----KFLIFGNCKTPAELKDDDIYEDLY----------RTNKLKCTACSLNECQNNSTCKVVDKLD-YTCVCSEKNQGRFCQFE-NACLD--NPCQHNGTCLKIVDTFMCNCSSGFLGEKCEIEKPCYFNNPCQNNGTCLKIVDTFMCNCSSGFLGEKCEIEKPCYF-------NNPCQNNGTCLEIVDTFMCNCSSGFLGEKC 1635
            Y+++ ++D+ +N ++ +    F N+  L  +    N++  +   T +G ++L  +S  GN +  +   AF   + L  L              WLS + K      G+ R          ++L   S +FT   P   N L+    N  L+   KN       P + Y       C C       Y F G D        I   CK        +  ED +             ++    C  N+C+NNSTC  VD ++ YTC+C  +  G  C+ + + C    NPCQH+  C+     F C+C+ G++GE C+I+     +N C+N   C   V+ + C C  G+ G  CE   P          N  CQN   C+  ++  +C C  G+ GEKC
Sbjct:  776 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAK--CNPCLSNPCKNDGTCNSDPVDFY------RCTCP------YGFKGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCEDNDCENNSTC--VDGINNYTCLCPPEYTGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPGYVGEHCDIDFDDCQDNKCKNGAHCTDAVNGYTCICPEGYSGLFCEFSPPMVLPRTSPCDNFDCQNGAQCIVRINEPICQCLPGYQGEKC 1156

The following BLAST results are available for this feature:

BLAST of TCONS_00004490 vs. Swiss-Prot (Human)

BLAST of TCONS_00004490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SLIT2	9.938e-37	30.47	Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE...	[more]

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TCONS_00004490 (transcript) - C. hemisphaerica