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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004485 ID=TCONS_00004485|Name=TCONS_00004485|organism=Clytia hemisphaerica|type=transcript|length=1114bp
CAAAGgagaataaagaaaatgaagcgCCGAAATCAGCAAAAGGAAGGAAA
CCACGCGCCAAATCTTCCAAAAGTGAAATAGACGAGGAACAAGTAATaga
taagaaaaaagtgaccaAAAGACCACCATCTGGGAAAGAAACAGCATCGA
AAAAAGGACGAAGCAAGGATACGAGTGACAAACCAACTGTCAGTGAGAAG
AAAACTCTGAAAGACAAGATTGAGAAGATGAAGACCATAAAGAAAGCTAA
AAGCACTGGTCAATTAACCAATAAGAAGCAGCGTGATGTTGCACAGGCTC
AAGAGGAAAGCGACGAGGAAGAATCGGATCAAGAGGAAGAATCAGAAAGT
GAGGAACGAAACGGAAATGGAAGTGGAACTGAGGAAGAGGAAAACGGAAG
TGGAagtgaagaagatgaagaagtacAGCCAGCTCCGAAGAAGCGTGCAG
GCGGTCGTGGTGGAAAAACTACAAAACAGAAGGAACAGGAATTGGCAAAc
agtgaaaatgaagaagaaaactcTGAATCAGAAATAGAATCTGAACTGGA
ACCGGTTAAGTCAGTTCCAAAAAAGCGTGGCGGTGGTCGTGGCGGCAAGG
CGGCTGTTCAGAAGGAGCAAGAAAAAGAACAACAGACAGAAAGCGAAAAC
GAAGAGAAGACTGGATCCGAGTCAGAACCCGAACCAGAACCCGTGAAACC
AGCTCCAAAGAAACGTGGTCGAAAACCTAAAAATTAAAGCGAATATTTTT
GATCGGCCGTAAGCGTTATGGCAATTCGCAACAGGACAAGCTTTGGCTTT
CTGTTAATAACCTGTTTTACAGTCTTATATCCAAACCAAAAGGATAAACA
GAAGGCACACTTTTGACTTGCTTTACTTTTTAGAATTATTTCCGTTTTCT
GTTATGTCGATAAGGattttatataattttgataaaattgtacattcaaa
taaatttttaagaacctgagatattcaaaatttagcAATTAAGATTTATG
TTCCCTTCTTCACTTACATAAAATAAACTTTTGGAAGTGTGAAAAGACCc
atccaaaaaaatgtagatgcTAAGCAACTATTAATACAACTGATTAAATA
TTTCAGAATTGCAG Run BLAST on NCBI protein sequence of TCONS_00004485-protein >TCONS_00004485-protein ID=TCONS_00004485-protein|Name=TCONS_00004485-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
KENKENEAPKSAKGRKPRAKSSKSEIDEEQVIDKKKVTKRPPSGKETASK
KGRSKDTSDKPTVSEKKTLKDKIEKMKTIKKAKSTGQLTNKKQRDVAQAQ
EESDEEESDQEEESESEERNGNGSGTEEEENGSGSEEDEEVQPAPKKRAG
GRGGKTTKQKEQELANSENEEENSESEIESELEPVKSVPKKRGGGRGGKA
AVQKEQEKEQQTESENEEKTGSESEPEPEPVKPAPKKRGRKPKN Run BLAST on NCBI transcript from alignment at sc0000045:180622..182476+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004485 ID=TCONS_00004485|Name=TCONS_00004485|organism=Clytia hemisphaerica|type=transcript|length=1855bp|location=Sequence derived from alignment at sc0000045:180622..182476+ (Clytia hemisphaerica)
CAAAGgagaataaagaaaatgaagcgCCGAAATCAGCAAAAGGAAGGAAA
CCACGCGCCAAATCTTCCAAAAGTGAAATAGACGAGGAACAAGTAATaga
taagaaaaaagtgaccaAAAGACCACCATCTGGTAattcatgaatttttg
cttttttgatacTCAATATATTAAACATTACCACGTGCCAAGGTTAGTAA
GGGTCGAGAAACCACTTTGGTAAAGGCCACTGGACTAGAGTTTACTTCAT
AATGAATTTTGCCCTTGAGCGAGCTTGAGCCTCCAAGTTTGACCAAAATT
AGTGTGCACTTAAGGCGAAAAAATGAGAAGtttattatttaaattttaac
cAAATGTTTAAATATGTCCATTATTTCTCGGTGTGGTTTTACTAATTTGG
CTTATTcaccttttataagaacaattttaccaGAAAAGTTAAGAACGATC
CAATTAGTCTCAGATTTTAGAAGCTTAGGAAAAGGCTGAAAATCCCTCTT
AAATCCCTTTTTATCTATGACCATTCAAGGCTGAAAGCCAGGAGAAACAT
AAGAACAGCAGAGAACCTCTGCCAAAATTTActagttttttacaaaataa
tttgATCATATTTGATAGGGAAAGAAACAGCATCGAAAAAAGGACGAAGC
AAGGATACGAGTGACAAACCAACTGTCAGTGAGAAGAAAACTCTGAAAGA
CAAGATTGAGAAGATGAAGACCATAAAGAAAGCTAAAAGCACTGGTAAAA
TCTCCTTGTTTGACGAATTCTGATAAAACACTGagctttcaaataaagtg
aaCTATTATGGGTCAACTCAAGCCAAGCCCTATAACCTTAGGAATTAGTT
GGATTTTAACTGAACAAACCAGTTCCATATTTAAAAGTATCCAGAATAGT
GGTAAAGTGGTAAATTTCTGATTCCATTTTTAGAGCGTATGAAATAAGAG
AAATTCAAATAACATCTTTTCAAGCTGAGTGATATTTCCTTTCTTCCAGG
TCAATTAACCAATAAGAAGCAGCGTGATGTTGCACAGGCTCAAGAGGAAA
GCGACGAGGAAGAATCGGATCAAGAGGAAGAATCAGAAAGTGAGGAACGA
AACGGAAATGGAAGTGGAACTGAGGAAGAGGAAAACGGAAGTGGAagtga
agaagatgaagaagtacAGCCAGCTCCGAAGAAGCGTGCAGGCGGTCGTG
GTGGAAAAACTACAAAACAGAAGGAACAGGAATTGGCAAAcagtgaaaat
gaagaagaaaactcTGAATCAGAAATAGAATCTGAACTGGAACCGGTTAA
GTCAGTTCCAAAAAAGCGTGGCGGTGGTCGTGGCGGCAAGGCGGCTGTTC
AGAAGGAGCAAGAAAAAGAACAACAGACAGAAAGCGAAAACGAAGAGAAG
ACTGGATCCGAGTCAGAACCCGAACCAGAACCCGTGAAACCAGCTCCAAA
GAAACGTGGTCGAAAACCTAAAAATTAAAGCGAATATTTTTGATCGGCCG
TAAGCGTTATGGCAATTCGCAACAGGACAAGCTTTGGCTTTCTGTTAATA
ACCTGTTTTACAGTCTTATATCCAAACCAAAAGGATAAACAGAAGGCACA
CTTTTGACTTGCTTTACTTTTTAGAATTATTTCCGTTTTCTGTTATGTCG
ATAAGGattttatataattttgataaaattgtacattcaaataaattttt
aagaacctgagatattcaaaatttagcAATTAAGATTTATGTTCCCTTCT
TCACTTACATAAAATAAACTTTTGGAAGTGTGAAAAGACCcatccaaaaa
aatgtagatgcTAAGCAACTATTAATACAACTGATTAAATATTTCAGAAT
TGCAG Coding sequence (CDS) from alignment at sc0000045:180622..182476+ >TCONS_00004485 ID=TCONS_00004485|Name=TCONS_00004485|organism=Clytia hemisphaerica|type=CDS|length=2205bp|location=Sequence derived from alignment at sc0000045:180622..182476+ (Clytia hemisphaerica)
AAGgagaataaagaaaatgaagcgCCGAAATCAGCAAAAGGAAGGAAACC
ACGCGCCAAATCTTCCAAAAGTGAAATAGACGAGGAACAAGTAATagata
agaaaaaagtgaccaAAAGACCACCATCTGGGAAAGAAACAGCATCGAAA
AAAGGACGAAGCAAGGATACGAGTGACAAACCAACTGTCAGTGAGAAGAA
AACTCTGAAAGACAAGATTGAGAAGATGAAGACCATAAAGAAAGCTAAAA
GCACTGGTCAATTAACCAATAAGAAGCAGCGTGATGTTGCACAGGCTCAA
GAGGAAAGCGACGAGGAAGAATCGGATCAAGAGGAAGAATCAGAAAGTGA
GGAACGAAACGGAAATGGAAGTGGAACTGAGGAAGAGGAAAACGGAAGTG
GAagtgaagaagatgaagaagtacAGCCAGCTCCGAAGAAGCGTGCAGGC
GGTCGTGGTGGAAAAACTACAAAACAGAAGGAACAGGAATTGGCAAAcag
tgaaaatgaagaagaaaactcTGAATCAGAAATAGAATCTGAACTGGAAC
CGGTTAAGTCAGTTCCAAAAAAGCGTGGCGGTGGTCGTGGCGGCAAGGCG
GCTGTTCAGAAGGAGCAAGAAAAAGAACAACAGACAGAAAGCGAAAACGA
AGAGAAGACTGGATCCGAGTCAGAACCCGAACCAGAACCCGTGAAACCAG
CTCCAAAGAAACGTGGTCGAAAACCTAAAAATTAAAAGgagaataaagaa
aatgaagcgCCGAAATCAGCAAAAGGAAGGAAACCACGCGCCAAATCTTC
CAAAAGTGAAATAGACGAGGAACAAGTAATagataagaaaaaagtgacca
AAAGACCACCATCTGGGAAAGAAACAGCATCGAAAAAAGGACGAAGCAAG
GATACGAGTGACAAACCAACTGTCAGTGAGAAGAAAACTCTGAAAGACAA
GATTGAGAAGATGAAGACCATAAAGAAAGCTAAAAGCACTGGTCAATTAA
CCAATAAGAAGCAGCGTGATGTTGCACAGGCTCAAGAGGAAAGCGACGAG
GAAGAATCGGATCAAGAGGAAGAATCAGAAAGTGAGGAACGAAACGGAAA
TGGAAGTGGAACTGAGGAAGAGGAAAACGGAAGTGGAagtgaagaagatg
aagaagtacAGCCAGCTCCGAAGAAGCGTGCAGGCGGTCGTGGTGGAAAA
ACTACAAAACAGAAGGAACAGGAATTGGCAAAcagtgaaaatgaagaaga
aaactcTGAATCAGAAATAGAATCTGAACTGGAACCGGTTAAGTCAGTTC
CAAAAAAGCGTGGCGGTGGTCGTGGCGGCAAGGCGGCTGTTCAGAAGGAG
CAAGAAAAAGAACAACAGACAGAAAGCGAAAACGAAGAGAAGACTGGATC
CGAGTCAGAACCCGAACCAGAACCCGTGAAACCAGCTCCAAAGAAACGTG
GTCGAAAACCTAAAAATTAAAAGgagaataaagaaaatgaagcgCCGAAA
TCAGCAAAAGGAAGGAAACCACGCGCCAAATCTTCCAAAAGTGAAATAGA
CGAGGAACAAGTAATagataagaaaaaagtgaccaAAAGACCACCATCTG
GGAAAGAAACAGCATCGAAAAAAGGACGAAGCAAGGATACGAGTGACAAA
CCAACTGTCAGTGAGAAGAAAACTCTGAAAGACAAGATTGAGAAGATGAA
GACCATAAAGAAAGCTAAAAGCACTGGTCAATTAACCAATAAGAAGCAGC
GTGATGTTGCACAGGCTCAAGAGGAAAGCGACGAGGAAGAATCGGATCAA
GAGGAAGAATCAGAAAGTGAGGAACGAAACGGAAATGGAAGTGGAACTGA
GGAAGAGGAAAACGGAAGTGGAagtgaagaagatgaagaagtacAGCCAG
CTCCGAAGAAGCGTGCAGGCGGTCGTGGTGGAAAAACTACAAAACAGAAG
GAACAGGAATTGGCAAAcagtgaaaatgaagaagaaaactcTGAATCAGA
AATAGAATCTGAACTGGAACCGGTTAAGTCAGTTCCAAAAAAGCGTGGCG
GTGGTCGTGGCGGCAAGGCGGCTGTTCAGAAGGAGCAAGAAAAAGAACAA
CAGACAGAAAGCGAAAACGAAGAGAAGACTGGATCCGAGTCAGAACCCGA
ACCAGAACCCGTGAAACCAGCTCCAAAGAAACGTGGTCGAAAACCTAAAA
ATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004485-exon-sc0000045-1491911889:180622..180753 | TCONS_00004485-exon-sc0000045-1491911889:180622..180753 | Clytia hemisphaerica | exon |
| TCONS_00004485-exon-sc0000045-1510915933:180622..180753 | TCONS_00004485-exon-sc0000045-1510915933:180622..180753 | Clytia hemisphaerica | exon |
| TCONS_00004485-exon-sc0000045-1575043694:180622..180753 | TCONS_00004485-exon-sc0000045-1575043694:180622..180753 | Clytia hemisphaerica | exon |
| TCONS_00004485-exon-sc0000045-1491911889:181240..181365 | TCONS_00004485-exon-sc0000045-1491911889:181240..181365 | Clytia hemisphaerica | exon |
| TCONS_00004485-exon-sc0000045-1510915933:181240..181365 | TCONS_00004485-exon-sc0000045-1510915933:181240..181365 | Clytia hemisphaerica | exon |
| TCONS_00004485-exon-sc0000045-1575043694:181240..181365 | TCONS_00004485-exon-sc0000045-1575043694:181240..181365 | Clytia hemisphaerica | exon |
| TCONS_00004485-exon-sc0000045-1491911889:181621..182476 | TCONS_00004485-exon-sc0000045-1491911889:181621..182476 | Clytia hemisphaerica | exon |
| TCONS_00004485-exon-sc0000045-1510915933:181621..182476 | TCONS_00004485-exon-sc0000045-1510915933:181621..182476 | Clytia hemisphaerica | exon |
| TCONS_00004485-exon-sc0000045-1575043694:181621..182476 | TCONS_00004485-exon-sc0000045-1575043694:181621..182476 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:180622..182476 + |
Blast
The following BLAST results are available for this feature:
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