TCONS_00004483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004483
Unique NameTCONS_00004483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004483 ID=TCONS_00004483|Name=TCONS_00004483|organism=Clytia hemisphaerica|type=transcript|length=2673bp
ATTTTGGTTACATGAAAGTGGAGAATGTTGGATGGTCTTCAGAGCATAGG
CCTCTCGTCATTGTCAAGCTACGCTTACCAAGTTACAAACCGAAACCAAT
TATTTGGATTGACGCAGGAATGCACGCACGTGAATGGATCGCACCGGCTA
CCGCAATGTTCATGATAAAAAAAATTCttgaagagaaaaacaaagatgGA
AATATTAAGAAACTATTGGAGAAATTTGAAGTTTGGATCATCCCTATGTT
TAACCCGGATGGCTATGAGTTTTCAATGACTGAAAATCGGATGTGGCGTA
AAACACGGACTCGTATTTCGAGTTCCAAATGTGTTGGAATTGACCCGAAT
CGGAATTTTAAGAGAGAATGGGGAGGTATCGGCTCTAGTGGTGATGCTTG
TAGTGACGTGTATCGGGGTCAATGTCCTGAAGAAGCACCGTGTGTCAGGG
CCTTTGCGCAACAATTGAGGTGTAACCAGAAGAGATTACATGCTTATTTT
TCATTACATTCATTCTTCCAATTGTTATTAACTCCAAATTCATATACTCC
ATTACCACCAAAGGATAATGCTGAAATTgtgaaATTTGCGTTTACATTTC
AAGCTGGAGTTCGGAAACGGTTTGGTACACCATATAACATAGGACCTGCA
TCTTTCATTTCAAtTCCACATAGTGGCAATGGACCAGACTATGTGCATGA
CGATTTACATATCACCAACTCCTACATCATTGAATTGAGAAATCGAAATA
CTAAAATTGGTTTTTTGTTACCTCCAGAAAATATTGAACCGTCAGCTTTG
GAAACTCTTGATGGAATTATTGATGGTGTATTCGGAATAACGCAAGTcag
aaatgattaaaaaatcatAGAGAGAGAGGCTATATGGTAACAAGTAGACC
GTTCGAATCACATGAATTACGGTCATGAAATTTAAAGATTAGATGGGTTT
CTTCGGACTagatttttctggaaaattgcGGAATAACGATTCCATACCAT
CCGATAAAAGGATGATGCCAAAAACCCAAAAGGTCATATATGTTGCAGCT
TTTGAGATGATTATCCCGAAGTTATAacagtaaaaataatttatcaGGTG
GTACCTTATCTTGAAAAAGACTGGATATAACTTTGTATGGAATGCTGATA
ATCTTAGACAAAGAAGTTTACTTTGTTGCTTCGCAGAGATGGCAATAACT
TCAGCTTACAAAAGACAACAATCCCTCGAACATTCTGAACTACTATCAAT
AGAGGGTTGATATTTtccagagagagagagagagagagagtcgtaaagat
atataaaaattcaaaatttttaaatccaaAATTTGTACTTTCCTCGTCAG
TAGAGATTCGTCGgcgaaaagtgaaaaaaaatcacttgctGCCGAAATTT
TGTTATGGCTTACCGTGTTCTACATATTATACATATGTTTGGAAGAAAGT
AACCTTTTCTTgatgttttttaatatttttgtaacttATCTTAAGCAGGT
GTATGTAATTTTACGtgtaaatatttcaatattttaacaaTTCCTTCTTT
AAAAGATTTAATCATATAAACAAGAGTAAGAAAATTCATTCACtaaataa
atttacaaaaaaaggaCTTTTAAGTTTCTTGTTTCGCCCAGCCGCATAAA
TCACGTCCATGTCGCGCTCTAGCTAACATTGTTGTAGCAATTACTGGGGT
GTACGGATCAAAAATTATCCGCCCACCTCTTCCAAAATTCTACTGTTAAC
TGATAAAACATCATACTTCCTCCGCAACAAATCATCAAACAGTATGTCAA
tacttttcattgttttttaaaCTCGCCTGCACCAGTATGGTTCCTTTAAA
AGTCCTCAAAGTGTCGTTAAAAGCCGTCGAAAAATGTTAAAACCCCGTCT
TGAAAGACGGTTTAACAGGAAAAATCAATGAATGATCTCAAGCTTCTGAG
CAATTTTTGCCATGAATGAGATTTTGAATTTCATACacttcactctcctc
cgtatcATCCGCCTCAAAAACTTCATCTTCCAATTCATCTTCATTGATCA
CAAAATCACTGACGTCAGCATCAGTCACATCTACACCCTCCTGCTCGGAG
TGGTCTTGTAATTTTGCGCTACTACACTCCTTTTCAGCCGGCTTACTACA
CACTTCTTCGTACGTTGGCGGAGCTAACATAGAAGGCACCCATGGAGGAG
AGTTATATTGTTTCTCCACCGTGGATGGCTCTCCAACTGCGTGATCCGTA
CCATCGTTTGACACTGTGACTGGTTCAGTAATCTGCATAGACGTTGTGGT
GGTGAAGTTTGGTGAGAATGTTACTTCGGTTGGTGTTACATTCACAGGGG
ATTCTGCAGTCTCCAGGGTTGTGTCACCGGTGAAGTTAGTTCCCTCGATA
CTAGAAACACGGTACTCAAGTCTTAGATGTTTTGGTTTCAGTCGCCATTT
AAGTATGATACCGGCACCAGAAGCGGCCAGGCCGAAGAAAAATAACATAG
GGCCGAAGATCTTGTAGGAAAGGATTCGTGAGTTTTCAGACTTCAGACAT
CTTGGTGGCTTGTTACATGAAGATGCAAACCCAAACATTGTCAAAACAAA
TCCCATGAGAGCAATTAATCCACCAGAGACAATGAGTATGAGTAACGAAT
GTTTTACTGCCATGCTGAtctgt
Run BLAST on NCBI

protein sequence of TCONS_00004483-protein

>TCONS_00004483-protein ID=TCONS_00004483-protein|Name=TCONS_00004483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=285bp
FGYMKVENVGWSSEHRPLVIVKLRLPSYKPKPIIWIDAGMHAREWIAPAT
AMFMIKKILEEKNKDGNIKKLLEKFEVWIIPMFNPDGYEFSMTENRMWRK
TRTRISSSKCVGIDPNRNFKREWGGIGSSGDACSDVYRGQCPEEAPCVRA
FAQQLRCNQKRLHAYFSLHSFFQLLLTPNSYTPLPPKDNAEIVKFAFTFQ
AGVRKRFGTPYNIGPASFISIPHSGNGPDYVHDDLHITNSYIIELRNRNT
KIGFLLPPENIEPSALETLDGIIDGVFGITQVRND
Run BLAST on NCBI

transcript from alignment at sc0000045:168772..174953+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004483 ID=TCONS_00004483|Name=TCONS_00004483|organism=Clytia hemisphaerica|type=transcript|length=6182bp|location=Sequence derived from alignment at sc0000045:168772..174953+ (Clytia hemisphaerica)
ATTTTGGTTACATGAAAGTGGAGAATGTTGGATGGTCTTCAGAGCATAGG
CCTCTCGTCATTGTCAAGGTATGCAACCTTTGGTCAGAAAAAAGTAATCT
GATCTTGTCTCGGTCTTCCTTTCAATGTCGGAGTATTGCCCTACAGTAAA
CTCATACCTctataattaaaatctttctgtaattcgaaataaatcatttg
aCTCCTTAACGGTAATTTCGTATGAAACATCCTCTTTAATTTAAAATAAT
CCTTGACCCTTAAAGCTCGACAAGAGAATCGTTGGGTTAGGATTAACATG
GTTTGTATGCCATTATATATTTCATGCGTCAATGCAATAGATCTCATAAT
CCCTGCAAACTCGGACCAATTCTTTTCATTTCATATTCGTCGCATTCACC
GTTTACAATGGAGAAAATAATGTTGCTTTAATGACCCGAATGAACATATC
CcccaattataatttttttataattttttttgggcaCAATATCAGATCCC
CTTTTATTCGGAACTCTCCTTTTTAATTGGATTTCGGAAAAATTTCGGAT
CCCCCCCTTTTTCCAGACCCCTACTATTCAGAACTTTAGTGTAATTCTTT
TACTTAACCATTACAGCTACGCTTACCAAGTTACAAACCGAAACCAATTA
TTTGGATTGACGCAGGAATGCACGCACGTGAATGGATCGCACCGGCTACC
GCAATGTTCATGATAAAAAAAGtatgtgtgtattttacagaccaatttga
tttgtcCGATCGAACTCACTCATAGTATAAGTAAAGGTCTGAAAGGTATT
CATCAAGTTAAATATTTTCAGCCAAGATAAAGCCCCGTGatcttttaatt
ttgaaaacaatatctttaaaaagaatCTTAGCAAAGAAAACACTGCCCAA
ATTGCGTAAAGTTCTTTAAAATAAAGGTCAAATATATGAAGTGTCGCAAg
ttattttttgctcaaaacaTGATAGTGGCTTCGACTAAAATAAACCATAG
GATATGATAGGATAAATCATATttataacgaacgaacgagcagCAAGGTC
ACGAGTTTGGTTCATGACCAAGTACGGCTACCGACGGTAAGTCTTTACCT
CTCTCTTCATACAGTTAAAATATTTAAACATCATTTTCAACAGATTCttg
aagagaaaaacaaagatgGAAATATTAAGAAACTATTGGAGAAATTTGAA
GTTTGGATCATCCCTATGTTTAACCCGGATGGCTATGAGTTTTCAATGAC
TGAAAATCGGATGTGGCGTAAAACACGGACTCGTATTTCGAGTTCCAAAT
GTGTTGGAATTGACCCGAATCGGAATTTTAAGAGAGAATGGGGAGGtgtg
tatattttttctttaacaATTTAACAAACGGTAATTTTGAGCCACCCTCC
CTTTTCTCGAATTACATctttaatctcatggttgattgaaattcgattga
cgtttttgcttacgttaatttgtaatttcccgcgaacttgtaatttcctt
cctagcttttgtaatttccctccgagattttgtaatttcccacaaaagtg
aaatttctatCGTTTGAAATCatctttttcgaatttcttactaacttcga
aggttaagtaaatggaatactattcaattaaaactcgattcgcaTTTCTa
taacttttttgagacctctttttaaaatttcagattgatttccattgtta
aattgacgtctttaagaattttcagaatttcaaaccaaaccatgagatta
accaggaatcccatgtttgttttcgtgaaattctggataaattacccttg
gtcaaatttcgaaatgttttaaatttccctcgttgcactcgggaaatttc
aaaaaatttcaaaattgacctcgggaaatttatcccgaatttccctcata
accatgagattactagtacaaatttgGTAAAACCTCTAATAAAAAGCATT
ATTGAAATCTGCTAGACgattttttctcaagattttagtATCGATTTTAC
ATGATAAACAATAACTTAGTCCCCAGAAAAATCATAATCACTATTTGCCC
CATAAGCTTCAAATACTGATAGTTTTACACCTAAAAAGAAGAAGCTGTCA
ATCAAACTGTTTTCTAAAATTCATATAGGTATCGGCTCTAGTGGTGATGC
TTGTAGTGACGTGTATCGGGGTCAATGTCCTGAAGAAGCACCGTGTGTCA
GGGCCTTTGCGCAACAATTGAGGTGTAACCAGAAGAGATTACATGCTTAT
TTTTCATTACATTCATTCTTCCAATTGTTATTAACTCCAAATTCATATAC
TCCATTACCACCAAAGGATAATGCTGAAATTGTGAGTTTcattttcagtt
aatttatagctCTATTTGAATTTTCTAGCGCTAGTTTCAACCTGAACACC
CCCTGAACATTCTTGTCTCGATGGCTTTGTTAGATCTACCCCGTGGGAAA
ACCCGGTGGAAAATTACTAAATATCCTTTTGTGATTTTCTGTCATATTGA
AAAAATCGCTGTCCACTTTTTCTCGCATTGTTGCCCctaaataaattatt
attttagttAAAACGTTGGATTTATATGGCTGAGCtctctttgaaatttt
caatgaaaaatcaatgaaaataagGGATTGAAAGCACCTGGGACAAGGTT
AATGTATGTCATGAACTTCTAAACTCGTTTAAAttacaaaataagaaaat
atttttttgaatatttttttttcaggtgaaATTTGCGTTTACATTTCAAG
CTGGAGTTCGGAAACGGTTTGGTACACCATATAACATAGGACCTGCATCT
TTCATTTCAAGTAAGTACTACCAATTGTTAGATTTTTtagctttgaaaaa
taaaaaaaatatcggCTAAACTGGCATTGAgaagagaaatatttttgtta
ctTTCGCAGATcccaatttcaaattttgtttcactTTAATAGCTCTTTGA
TGTAAGCACACCCTTGTATCACAGCCCCGGTGTAGCNTGTTTCACTTTAA
TAGCTCTTTGATGTAAGCacacccttgtctcacagccccggtgtaGGTTC
TTCCCAcagtgaagatgaaaatgtccATCTATTAAGTTCCCAGGTCAAAA
AATCTAGTAcaaatttttacattgaattcaATTGGGGACGAAACCAAAAT
CAATTGTCCAGTTGGACTGAAATTGTAGAGAAAGTCCCACCTGGGACTAA
ATTTTCTAGTTGGTATGGGTCCGACCGGTTCTGTGACACTGCGGTGTGTA
GTGTTCTGAAAGCTCTTGGGAAACATGGATGGGATTAATCCATTGCACGG
TGGTCTTGAGGTGGTATCTCACCTTGAGAAGACCACGAAACAATAGTATT
ATTATTTTGGAATAGTCTCCAACTTGAGAGTTTACTTAAGCCCCACTATT
GGTTTGTAAGATGACGTAATTGATGCTTGTTAAACGGGGGAGGAAAAGCC
TTTTTACGCGTAGGTGACGACGCACATATCGGAGCAGGTTTTTAATCAGA
GTTCTTTTAAATATCTATTCAAACCTGCAACACGTTTTACAAAAGCTAAA
ATTCTAGAAATTAGTATTCTTTCGTTGGATTACCTTAAGATAAGAGAAGA
AACTTtagcgagaagaaattttggggAATGAGCCCATTCgccaattttgg
tgcaatttattttggcgacttaataaaatttctaaatttggtgtgaatta
attttggcgaacgacccattgttgttcaatattttagctgaaaaaagagG
GAACAAAAGggtttttaggagaaatagaaactaaattgaaagaaaattaa
atttggcgagaatctATTTTCGCGAATGAtctataaatttaaatttggtg
gaaagaaatttcttcccttaacctttccagcgcacaacattttttgaaaa
atctcaaaattttcaacttttttttttttgaaacccaaaactttaaaata
acgTTAAAGCTTGTAACTTAAGAGTCAGAccatttgaaaggtatttttat
aTTCTTCCTAAAAACATTCTGTTTATACCTTTTTAAATCTAGTGGTCAGG
AGCTATGGCCTTAAGTCTGAGACTCGGTATATGAGCTCATTTTGGACGTT
CATGTACGTCATTCGGGTCTGAAGGGTTAAGGTATgttcaattcttcaaa
tttttttcttctttctttttagtTCCACATAGTGGCAATGGACCAGACTA
TGTGCATGACGATTTACATATCACCAACTCCTACATCATTGAATTGAGAA
ATCGAAATACTAAAATTGGTTTTTTGTTACCTCCAGAAAATATTGAACCG
TCAGCTTTGGAAACTCTTGATGGAATTATTGATGGTGTATTCGGAATAAC
GCAAGTcagaaatgattaaaaaatcatAGAGAGAGAGGCTATATGGTAAC
AAGTAGACCGTTCGAATCACATGAATTACGGTCATGAAATTTAAAGATTA
GATGGGTTTCTTCGGACTagatttttctggaaaattgcGGAATAACGATT
CCATACCATCCGATAAAAGGATGATGCCAAAAACCCAAAAGGTCATATAT
GTTGCAGCTTTTGAGATGATTATCCCGAAGTTATAacagtaaaaataatt
tatcaGGTGGTACCTTATCTTGAAAAAGACTGGATATAACTTTGTATGGA
ATGCTGATAATCTTAGACAAAGAAGTTTACTTTGTTGCTTCGCAGAGATG
GCAATAACTTCAGCTTACAAAAGACAACAATCCCTCGAACATTCTGAACT
ACTATCAATAGAGGGTTGATATTTtccagagagagagagagagagagagt
cgtaaagatatataaaaattcaaaatttttaaatccaaAATTTGTACTTT
CCTCGTCAGTAGAGATTCGTCGgcgaaaagtgaaaaaaaatcacttgctG
CCGAAATTTTGTTATGGCTTACCGTGTTCTACATATTATACATATGTTTG
GAAGAAAGTAACCTTTTCTTgatgttttttaatatttttgtaacttATCT
TAAGCAGGTGTATGTAATTTTACGtgtaaatatttcaatattttaacaaT
TCCTTCTTTAAAAGATTTAATCATATAAACAAGAGTAAGAAAATTCATTC
ACtaaataaatttacaaaaaaaggaCTTTTAAGTTTCTTGTTTCGCCCAG
CCGCATAAATCACGTCCATGTCGCGCTCTAGCTAACATTGTTGTAGCAAT
TACTGGGGTGTACGGATCAAAAATTATCCGCCCACCTCTTCCAAAATTCT
ACTGTTAACTGATAAAACATCATACTTCCTCCGCAACAAATCATCAAACA
GTATGTCAAtacttttcattgttttttaaaCTCGCCTGCACCAGTATGGT
TCCTTTAAAAGTCCTCAAAGTGTCGTTAAAAGCCGTCGAAAAATGTTAAA
ACCCCGTCTTGAAAGACGGTTTAACAGGAAAAATCAATGAATGATCTCAA
GCTTCTGAGCAATTTTTGCCATGAATGAGATTTTGAATTTCATACacttc
actctcctccgtatcATCCGCCTCAAAAACTTCATCTTCCAATTCATCTT
CATTGATCACAAAATCACTGACGTCAGCATCAGTCACATCTACACCCTCC
TGCTCGGAGTGGTCTTGTAATTTTGCGCTACTACACTCCTTTTCAGCCGG
CTTACTACACACTTCTTCGTACGTTGGCGGAGCTAACATAGAAGGCACCC
ATGGAGGAGAGTTATATTGTTTCTCCACCGTGGATGGCTCTCCAACTGCG
TGATCCGTACCATCGTTTGACACTGTGACTGGTTCAGTAATCTGCATAGA
CGTTGTGGTGGTGAAGTTTGGTGAGAATGTTACTTCGGTTGGTGTTACAT
TCACAGGGGATTCTGCAGTCTCCAGGGTTGTGTCACCGGTGAAGTTAGTT
CCCTCGATACTAGAAACACGGTACTCAAGTCTTAGATGTTTTGGTTTCAG
TCGCCATTTAAGTATGATACCGGCACCAGAAGCGGCCAGGCCGAAGAAAA
ATAACATAGGGCCGAAGATCTTGTAGGAAAGGATTCGTGAGTTTTCAGAC
TTCAGACATCTTGGTGGCTTGTTACATGAAGATGCAAACCCAAACATTGT
CAAAACAAATCCCATGAGAGCAATTAATCCACCAGAGACAATGAGTATGA
GTAACGAATGTTTTACTGCCATGCTGAtctgt

Coding sequence (CDS) from alignment at sc0000045:168772..174953+

>TCONS_00004483 ID=TCONS_00004483|Name=TCONS_00004483|organism=Clytia hemisphaerica|type=CDS|length=5148bp|location=Sequence derived from alignment at sc0000045:168772..174953+ (Clytia hemisphaerica)
TTTGGTTACATGAAAGTGGAGAATGTTGGATGGTCTTCAGAGCATAGGCC
TCTCGTCATTGTCAAGCTACGCTTACCAAGTTACAAACCGAAACCAATTA
TTTGGATTGACGCAGGAATGCACGCACGTGAATGGATCGCACCGGCTACC
GCAATGTTCATGATAAAAAAAATTCttgaagagaaaaacaaagatgGAAA
TATTAAGAAACTATTGGAGAAATTTGAAGTTTGGATCATCCCTATGTTTA
ACCCGGATGGCTATGAGTTTTCAATGACTGAAAATCGGATGTGGCGTAAA
ACACGGACTCGTATTTCGAGTTCCAAATGTGTTGGAATTGACCCGAATCG
GAATTTTAAGAGAGAATGGGGAGGTATCGGCTCTAGTGGTGATGCTTGTA
GTGACGTGTATCGGGGTCAATGTCCTGAAGAAGCACCGTGTGTCAGGGCC
TTTGCGCAACAATTGAGGTGTAACCAGAAGAGATTACATGCTTATTTTTC
ATTACATTCATTCTTCCAATTGTTATTAACTCCAAATTCATATACTCCAT
TACCACCAAAGGATAATGCTGAAATTgtgaaATTTGCGTTTACATTTCAA
GCTGGAGTTCGGAAACGGTTTGGTACACCATATAACATAGGACCTGCATC
TTTCATTTCAAtTCCACATAGTGGCAATGGACCAGACTATGTGCATGACG
ATTTACATATCACCAACTCCTACATCATTGAATTGAGAAATCGAAATACT
AAAATTGGTTTTTTGTTACCTCCAGAAAATATTGAACCGTCAGCTTTGGA
AACTCTTGATGGAATTATTGATGGTGTATTCGGAATAACGCAAGTcagaa
atgattaaTTTGGTTACATGAAAGTGGAGAATGTTGGATGGTCTTCAGAG
CATAGGCCTCTCGTCATTGTCAAGCTACGCTTACCAAGTTACAAACCGAA
ACCAATTATTTGGATTGACGCAGGAATGCACGCACGTGAATGGATCGCAC
CGGCTACCGCAATGTTCATGATAAAAAAAATTCttgaagagaaaaacaaa
gatgGAAATATTAAGAAACTATTGGAGAAATTTGAAGTTTGGATCATCCC
TATGTTTAACCCGGATGGCTATGAGTTTTCAATGACTGAAAATCGGATGT
GGCGTAAAACACGGACTCGTATTTCGAGTTCCAAATGTGTTGGAATTGAC
CCGAATCGGAATTTTAAGAGAGAATGGGGAGGTATCGGCTCTAGTGGTGA
TGCTTGTAGTGACGTGTATCGGGGTCAATGTCCTGAAGAAGCACCGTGTG
TCAGGGCCTTTGCGCAACAATTGAGGTGTAACCAGAAGAGATTACATGCT
TATTTTTCATTACATTCATTCTTCCAATTGTTATTAACTCCAAATTCATA
TACTCCATTACCACCAAAGGATAATGCTGAAATTgtgaaATTTGCGTTTA
CATTTCAAGCTGGAGTTCGGAAACGGTTTGGTACACCATATAACATAGGA
CCTGCATCTTTCATTTCAAtTCCACATAGTGGCAATGGACCAGACTATGT
GCATGACGATTTACATATCACCAACTCCTACATCATTGAATTGAGAAATC
GAAATACTAAAATTGGTTTTTTGTTACCTCCAGAAAATATTGAACCGTCA
GCTTTGGAAACTCTTGATGGAATTATTGATGGTGTATTCGGAATAACGCA
AGTcagaaatgattaaTTTGGTTACATGAAAGTGGAGAATGTTGGATGGT
CTTCAGAGCATAGGCCTCTCGTCATTGTCAAGCTACGCTTACCAAGTTAC
AAACCGAAACCAATTATTTGGATTGACGCAGGAATGCACGCACGTGAATG
GATCGCACCGGCTACCGCAATGTTCATGATAAAAAAAATTCttgaagaga
aaaacaaagatgGAAATATTAAGAAACTATTGGAGAAATTTGAAGTTTGG
ATCATCCCTATGTTTAACCCGGATGGCTATGAGTTTTCAATGACTGAAAA
TCGGATGTGGCGTAAAACACGGACTCGTATTTCGAGTTCCAAATGTGTTG
GAATTGACCCGAATCGGAATTTTAAGAGAGAATGGGGAGGTATCGGCTCT
AGTGGTGATGCTTGTAGTGACGTGTATCGGGGTCAATGTCCTGAAGAAGC
ACCGTGTGTCAGGGCCTTTGCGCAACAATTGAGGTGTAACCAGAAGAGAT
TACATGCTTATTTTTCATTACATTCATTCTTCCAATTGTTATTAACTCCA
AATTCATATACTCCATTACCACCAAAGGATAATGCTGAAATTgtgaaATT
TGCGTTTACATTTCAAGCTGGAGTTCGGAAACGGTTTGGTACACCATATA
ACATAGGACCTGCATCTTTCATTTCAAtTCCACATAGTGGCAATGGACCA
GACTATGTGCATGACGATTTACATATCACCAACTCCTACATCATTGAATT
GAGAAATCGAAATACTAAAATTGGTTTTTTGTTACCTCCAGAAAATATTG
AACCGTCAGCTTTGGAAACTCTTGATGGAATTATTGATGGTGTATTCGGA
ATAACGCAAGTcagaaatgattaaTTTGGTTACATGAAAGTGGAGAATGT
TGGATGGTCTTCAGAGCATAGGCCTCTCGTCATTGTCAAGCTACGCTTAC
CAAGTTACAAACCGAAACCAATTATTTGGATTGACGCAGGAATGCACGCA
CGTGAATGGATCGCACCGGCTACCGCAATGTTCATGATAAAAAAAATTCt
tgaagagaaaaacaaagatgGAAATATTAAGAAACTATTGGAGAAATTTG
AAGTTTGGATCATCCCTATGTTTAACCCGGATGGCTATGAGTTTTCAATG
ACTGAAAATCGGATGTGGCGTAAAACACGGACTCGTATTTCGAGTTCCAA
ATGTGTTGGAATTGACCCGAATCGGAATTTTAAGAGAGAATGGGGAGGTA
TCGGCTCTAGTGGTGATGCTTGTAGTGACGTGTATCGGGGTCAATGTCCT
GAAGAAGCACCGTGTGTCAGGGCCTTTGCGCAACAATTGAGGTGTAACCA
GAAGAGATTACATGCTTATTTTTCATTACATTCATTCTTCCAATTGTTAT
TAACTCCAAATTCATATACTCCATTACCACCAAAGGATAATGCTGAAATT
gtgaaATTTGCGTTTACATTTCAAGCTGGAGTTCGGAAACGGTTTGGTAC
ACCATATAACATAGGACCTGCATCTTTCATTTCAAtTCCACATAGTGGCA
ATGGACCAGACTATGTGCATGACGATTTACATATCACCAACTCCTACATC
ATTGAATTGAGAAATCGAAATACTAAAATTGGTTTTTTGTTACCTCCAGA
AAATATTGAACCGTCAGCTTTGGAAACTCTTGATGGAATTATTGATGGTG
TATTCGGAATAACGCAAGTcagaaatgattaaTTTGGTTACATGAAAGTG
GAGAATGTTGGATGGTCTTCAGAGCATAGGCCTCTCGTCATTGTCAAGCT
ACGCTTACCAAGTTACAAACCGAAACCAATTATTTGGATTGACGCAGGAA
TGCACGCACGTGAATGGATCGCACCGGCTACCGCAATGTTCATGATAAAA
AAAATTCttgaagagaaaaacaaagatgGAAATATTAAGAAACTATTGGA
GAAATTTGAAGTTTGGATCATCCCTATGTTTAACCCGGATGGCTATGAGT
TTTCAATGACTGAAAATCGGATGTGGCGTAAAACACGGACTCGTATTTCG
AGTTCCAAATGTGTTGGAATTGACCCGAATCGGAATTTTAAGAGAGAATG
GGGAGGTATCGGCTCTAGTGGTGATGCTTGTAGTGACGTGTATCGGGGTC
AATGTCCTGAAGAAGCACCGTGTGTCAGGGCCTTTGCGCAACAATTGAGG
TGTAACCAGAAGAGATTACATGCTTATTTTTCATTACATTCATTCTTCCA
ATTGTTATTAACTCCAAATTCATATACTCCATTACCACCAAAGGATAATG
CTGAAATTgtgaaATTTGCGTTTACATTTCAAGCTGGAGTTCGGAAACGG
TTTGGTACACCATATAACATAGGACCTGCATCTTTCATTTCAAtTCCACA
TAGTGGCAATGGACCAGACTATGTGCATGACGATTTACATATCACCAACT
CCTACATCATTGAATTGAGAAATCGAAATACTAAAATTGGTTTTTTGTTA
CCTCCAGAAAATATTGAACCGTCAGCTTTGGAAACTCTTGATGGAATTAT
TGATGGTGTATTCGGAATAACGCAAGTcagaaatgattaaTTTGGTTACA
TGAAAGTGGAGAATGTTGGATGGTCTTCAGAGCATAGGCCTCTCGTCATT
GTCAAGCTACGCTTACCAAGTTACAAACCGAAACCAATTATTTGGATTGA
CGCAGGAATGCACGCACGTGAATGGATCGCACCGGCTACCGCAATGTTCA
TGATAAAAAAAATTCttgaagagaaaaacaaagatgGAAATATTAAGAAA
CTATTGGAGAAATTTGAAGTTTGGATCATCCCTATGTTTAACCCGGATGG
CTATGAGTTTTCAATGACTGAAAATCGGATGTGGCGTAAAACACGGACTC
GTATTTCGAGTTCCAAATGTGTTGGAATTGACCCGAATCGGAATTTTAAG
AGAGAATGGGGAGGTATCGGCTCTAGTGGTGATGCTTGTAGTGACGTGTA
TCGGGGTCAATGTCCTGAAGAAGCACCGTGTGTCAGGGCCTTTGCGCAAC
AATTGAGGTGTAACCAGAAGAGATTACATGCTTATTTTTCATTACATTCA
TTCTTCCAATTGTTATTAACTCCAAATTCATATACTCCATTACCACCAAA
GGATAATGCTGAAATTgtgaaATTTGCGTTTACATTTCAAGCTGGAGTTC
GGAAACGGTTTGGTACACCATATAACATAGGACCTGCATCTTTCATTTCA
AtTCCACATAGTGGCAATGGACCAGACTATGTGCATGACGATTTACATAT
CACCAACTCCTACATCATTGAATTGAGAAATCGAAATACTAAAATTGGTT
TTTTGTTACCTCCAGAAAATATTGAACCGTCAGCTTTGGAAACTCTTGAT
GGAATTATTGATGGTGTATTCGGAATAACGCAAGTcagaaatgattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002524XLOC_002524Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004483-proteinTCONS_00004483-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004483-exon-sc0000045-1491911889:168772..168839TCONS_00004483-exon-sc0000045-1491911889:168772..168839Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1510915933:168772..168839TCONS_00004483-exon-sc0000045-1510915933:168772..168839Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1575043694:168772..168839TCONS_00004483-exon-sc0000045-1575043694:168772..168839Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1491911889:169388..169492TCONS_00004483-exon-sc0000045-1491911889:169388..169492Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1510915933:169388..169492TCONS_00004483-exon-sc0000045-1510915933:169388..169492Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1575043694:169388..169492TCONS_00004483-exon-sc0000045-1575043694:169388..169492Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1491911889:169915..170116TCONS_00004483-exon-sc0000045-1491911889:169915..170116Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1510915933:169915..170116TCONS_00004483-exon-sc0000045-1510915933:169915..170116Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1575043694:169915..170116TCONS_00004483-exon-sc0000045-1575043694:169915..170116Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1491911889:170900..171102TCONS_00004483-exon-sc0000045-1491911889:170900..171102Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1510915933:170900..171102TCONS_00004483-exon-sc0000045-1510915933:170900..171102Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1575043694:170900..171102TCONS_00004483-exon-sc0000045-1575043694:170900..171102Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1491911889:171497..171581TCONS_00004483-exon-sc0000045-1491911889:171497..171581Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1510915933:171497..171581TCONS_00004483-exon-sc0000045-1510915933:171497..171581Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1575043694:171497..171581TCONS_00004483-exon-sc0000045-1575043694:171497..171581Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1491911889:172944..174953TCONS_00004483-exon-sc0000045-1491911889:172944..174953Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1510915933:172944..174953TCONS_00004483-exon-sc0000045-1510915933:172944..174953Clytia hemisphaericaexon
TCONS_00004483-exon-sc0000045-1575043694:172944..174953TCONS_00004483-exon-sc0000045-1575043694:172944..174953Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:168772..174953 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.115187	0.166993	0	0.127597	0	0.0595382	0	0.134493	0	0.0842809	0	0.116524	0.656784	0.698842	2.81251	0.815982	0.706652	0.0677999	0	0	0	0	0.746192	0.889591	0	0.0764126	0	0.0817597	0.0799057	0.079842
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000834Peptidase_M14
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0004181metallocarboxypeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004181 metallocarboxypeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00004483 vs. Swiss-Prot (Human)
Match: CBPA2 (Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 SV=3)

HSP 1 Score: 196.823 bits (499), Expect = 8.589e-55
Identity = 105/271 (38.75%), Postives = 159/271 (58.67%), Query Frame = 3 
Query:    6 GYMKVENVGWSSEHRPLVIVKLRLPSYKPKPIIWIDAGMHAREWIAPATAMFMIKKILEEKNKDGNIKKLLEKFEVWIIPMFNPDGYEFSMTENRMWRKTRTRISSSKCVGIDPNRNFKREWGGIGSSGDACSDVYRGQCPEEAPCVRAFAQQLRCNQKRLHAYFSLHSFFQLLLTPNSYTPLPPKDNAEIVKFAFTFQAGVRKRFGTPYNIGPASFISIPHSGNGPDYVHDDLHITNSYIIELRNRNTKIGFLLPPENIEPSALETLDGI 818
            G +   N+G S E+RP+ +  L+  +   KP IW+DAG+HAREW+  ATA++   KI+ +  KD +I  +L+  +++++P+ NPDGY FS T+NRMWRKTR+++S S CVG+DPNRN+   +GG G+S + CSD Y G        V++    ++ + K + A+ +LHS+ QLL+ P  Y      D  E+ + A      +R   GT Y +GP   +    SG   D+ + D  I  S+  ELR+   + GFLLP   I P+A ET  G+
Sbjct:  142 GLVSKVNIGSSFENRPMNV--LKFSTGGDKPAIWLDAGIHAREWVTQATALWTANKIVSDYGKDPSITSILDALDIFLLPVTNPDGYVFSQTKNRMWRKTRSKVSGSLCVGVDPNRNWDAGFGGPGASSNPCSDSYHGPSANSEVEVKSIVDFIKSHGK-VKAFITLHSYSQLLMFPYGYKCTKLDDFDELSEVAQKAAQSLRSLHGTKYKVGPICSVIYQASGGSIDWSY-DYGIKYSFAFELRDTG-RYGFLLPARQILPTAEETWLGL 407
The following BLAST results are available for this feature:
BLAST of TCONS_00004483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CBPA28.589e-5538.75Carboxypeptidase A2 OS=Homo sapiens GN=CPA2 PE=1 S... [more]
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