TCONS_00004479 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004479
Unique Name	TCONS_00004479
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	940

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000045:136405..143124+

transcript sequence

>TCONS_00004479 ID=TCONS_00004479|Name=TCONS_00004479|organism=Clytia hemisphaerica|type=transcript|length=940bp
ATTAATATCTGAAAATTCTTTTCAAGCTTTTTATGAATCAAAGATGGTGT
TGGTGAACAAAATAGCACTTGGTTTATTGCCATGTGGAATACTGACTTCT
TTGGTCATTATTGGATTTATTTTCTATCAAGATGACTTTACGAGGATTCA
TGGGCATTTGTTAAGAGTGTCTCGGAGTCGAAGGTTCATCACACATCata
cattcaccaaaacaacaAACACATCAGTTAAAACAGAGAAGGCATATAAA
GAAGGTGCAAGGAAAATATTACAAATACACggtgataaaaatttatattt
ctcATTACGGAATTTCACGGTGGAGCTGAGTCAGCGTTTTCAGCATCTaa
tggaaataaaaaataaagaagaagaaggcTGGGaacgaaagaaaaaagaa
gaaatagaaaGATACGAAATTCAACAACTTCATTCCAGAAATTTGAAAGG
ATATTCAGAATGTCGCAGTCAATTGAATATTGTGTTTCTAAAGACGCATA
AAACTGGGAGCAGCACTTTGACTAATATTTTGAACAGATTTGCTGACATC
AACAATTTACGAATGCTATTACCAAGAGGGGTAGCGCATCGATTTTCTTG
GCCATCAATCTTTTCAGGATATTACGTGGAAGAAAATTACTTGGATAAAA
GGAACAATTTTAAAGCAAATTTGTTAGTCAATCATGCAAGGTACATTTTA
TGTCTAACGTTAAAACGATACTGTCGGTTGTCAGTAAAAGCCAATAATCC
CCCGGTTGACGGAGGAacgaaatcgaccctttttcggacggagtggcgga
attcgatgggaattttgacaaaatttcggAAATTCAGTCCTTTGTTGGAA
TCGAAATATTGGGCATTTTAGTCCGGAAAAACAGAATGTAGCAAATAATG
TTGCCGTTTTTggaaatggcaaaaatatttagaattcCCG

Run BLAST on NCBI

transcript from alignment at sc0000045:136405..143124+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004479 ID=TCONS_00004479|Name=TCONS_00004479|organism=Clytia hemisphaerica|type=transcript|length=6720bp|location=Sequence derived from alignment at sc0000045:136405..143124+ (Clytia hemisphaerica)
ATTAATATCTGAAAATTCTTTTCAAGCTTTTTATGAATCAAAGATGGTGT
TGGTGAACAAAATAGCACTTGGTTTATTGCCATGTGGAATACTGACTTCT
TTGGTCATTATTGGATTTATTTTCTATCAAGGTATGTATATCACACGTTT
CACTACAATTTTACAGGGTGGGCAAAGTGAAATATGGTCAGACAAAAATC
CAATTAAAAGTGCTATAGAAAATCTAAAACTTTGATAGCTTCTCGACATT
TCGGCATTTGCTTGAAGACATTCTatcaaatttctttcttaaTAAAATTA
CAAATCCTTTGTTTTGAATGTCATTTTAAAACCTCTTATCAAGTCAAGTA
TCTGAAGAATAATAATGAATGGAATGTActaaaaaaatataatgtaTATA
AAAGACTAATGCGACTAACTTTTGTGAAATGTATTACATGTAGTGCTTAT
GACGAGGTTTTCAAGTATAGCTAGCAAAAGAGAAATAAAATTTATGGGGT
ACTAATTGCTCTGTAAGTAGCACAATTTTTGTTTGAACGTATTTTTTTGC
CCACCCTGTAGATTTACTTCATATCAAAAATAgtttgacaaaaacaaaaa
gagttCCAAGTTTGTAGCCTGTATCATCCTATGTTAAGCTTTACAGACTA
GATAGTGGAGTGAATCCACGATCCAAAGAACATTAACGCCttctcttgtc
tcccgaatagacggggggatcctaataagagcgggggggattttttctct
caacaattagcgggggggggtgTCTATCCCgtgtctattcgggagacaaa
gTATTGTTATAATCGAGGTCACaatattaaaagaaaagaaGTTTTGAAGC
GCTCTAACTTGGGTTTACTGTAGGGggagagttttaactctgagttttaa
cgctaatCTTAAGACTTAACAACTTAGGATCTGAGAATCCAAACGTTTAA
AAATAGTcaaataaggctcagaatatagcttCGATTATATTTGACAGATA
GCCCAAAAGTGAATTCTCAATGTATTTCGTAGGCGCCATATGGCAGCGGG
CCTTTGCCTTGATCtgaccacattttttcaaagcaaatttATTAACCAAG
TCAACTTCTGTTTGATGACTTTAAAACAGAGCTGTTTTAGGCGATAGCAT
AACGTgaccctatcactttcaaagtgaAGTCAAGACCGACGGATATTTTG
ACTCTTCCAGTAAGTCATTTTGCAACAAGTCCAAATCAATTATCAATatt
gttaactttttttatagATGACTTTACGAGGATTCATGGGCATTTGTTAA
GAGTGTCTCGGAGTCGAAGGTTAGTCAAAGACACCCCTGTggcacagacc
cgctgggaccccagacccactggaaaatttggcaacaATTTCGTCCCTTG
TAGGAAAATACCCGGGAATGTTACCCCCGCTTGGAAATtgactgaggaaa
aaagttccaccgcggggctgtgagacaggggtgttcaaaGTCTCGAAGAA
AATATTAACAAAGAAAACTTTGAAGTgtgaaaaagtaaaaacttcAGTTT
GAAAACAACAGAATACTAAATCCCCTGTAAGAATCGTTCCATCCCCGACA
TCTAACCTTTTCATTGACCTTCAATTCACACTTAGAAAAGGTCACTGAAA
CAGGAATATATCTTTATATCTTGCAACCACCCCTATCAATTCATTCGTTT
GTAATaacagagatttggaaaaagaggataagaaatgcgctattcatcta
tttgaagctaggctgtagaatcttttgtttctattgaaatgtctgcGGCC
GATCGATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNATTCTACAGCcttgcttcttcaaagggtgccgaattcaaagggaaaga
ataggaaaacagcgagcggcagcggcgtttcttatcctcttttcccaaat
ctctggtaATAATATGAAGTCTCTGGAATTCACAATATTGTACACCTTAG
AAAGATGCTCTATCAATTTACTGCAGTAGCTCTTTtcaaactacatgttt
ttttgtttttgaagccttgggatgttctgaactttttcagttttaagcct
aaaagtgttattaacatgttcttattttcgccatattttgagtattttcg
TCCATATTCCTATGAAATTCGATGTTCTAGAGTCtgcaaaatcttaaaat
gttcttaacttgttcttaacattttggccttcAAAGCCTTatcttcttat
atagtttgttcttaaaaaaaaaagaaacgtgtagcATAATATAAATCATT
TTTTCGTAGGTTCATCACACATCatacattcaccaaaacaacaAACACAT
CAGTTAAAACAGAGAAGGCATATAAAGAAGGTGCAAGGAAAATATTACAA
ATACACggtgataaaaatttatatttctcATTACGGAATTTCACGGTGGA
GCTGAGTCAGCGTTTTCAGCATCTaatggaaataaaaaataaagaagaag
aaggcTGGGaacgaaagaaaaaagaagaaatagaaaGATACGAAATTCAA
CAACTTCATTCCAGAAATTTGAAAGGATATTCAGAGTAAGAATTGCGGAA
GGGCGGGGGAGGGCGTGGCCGATCTTTAAACGACCTAAACTGTGCTATTC
CAGATAAAATCTGTACCCCTTATGCGTTTGAGGagatcttttttttgaaa
aggtgaccccccctggattttgtttttattttttcaggactCCCTTGGAT
TTTCGTTCTCACTTTCGGCGAAAAATCAGCCCcgtggatttttttttaat
tttcagatcACCCTTGACGCTACACAACACAGGGGTACAGGCTTTTTCTG
CCCATTAAGAGCCCATTAAATGATTTCATTATGTAATTCCCTAAGCAGAA
TATTCTAAATAATGGTCGATATCTTTCTGGCGTTACTGCATAAAATCGAT
AAAAGGCTACGTCATGAATATCTGAATAGATACAATACACAGCAAGCAAA
CACCGTATGTTATATGGGCGTCAAATGAGTGGCGTTTTTTGTGGACTTGA
TATCACTAAGATATGTCGGCTACCTGATGAACCGTATCAATAAACACATA
AGTATCTGGCCAAATGCAGAATATTTTAGATTCACAGAAGCCGTAGATGA
TAAAGGCACTtgcagtcaactctctctaatccgAACGGCTATTATTCGAA
TTTTATGTAAcccgaactaaaatattggacCTCTCAGctgaaaagtggtt
taaattattattttaattcGATTCTTTCTCCGATTCctgatattcatgat
gaaatcttttatacggaagcagcTGAAAAACACCGGGTGTATGCcaccag
ttttgaatttaaagaatgaaactggtggcaaacgcccaatgttttttgtg
tgtttccgtataaaagattacattaTGAATATTAAGAATTCAAAGAAAGT
TTTCGATCTCTTGACGATCGAATTAGAGGGAGTCAACTGAATGCCCTACC
TATCGTTTaaagtttctttgtattttttaaatctttcagATGTCGCAGTC
AATTGAATATTGTGTTTCTAAAGACGCATAAAACTGGGAGCAGCACTTTG
ACTAATATTTTGAACAGATTTGCTGACATCAACAATTTACGAATGCTATT
ACCAAGAGGGGTAGCGCATCGATTTTCTTGGCCATCAATCTTTTCAGGAT
ATTACGTGGAAGAAAATTACTTGGATAAAAGGAACAATTTTAAAGCAAAT
TTGTTAGTCAATCATGCAAGGTACATTTTATGTCTAACGTTAAAACGATA
CTGTCGGTTGTCAGTAAAAGCCAATAATCCCCCGGTTGACGGAGGAacga
aatcgaccctttttcggacggagtggcggaattcgatgggaattttgaca
aaatttcggAAATTCAGTCCTTTGTTGGAATCGAAATATTGGGCATTTTA
GTCCGGAAAAACAGAATGTAGCAAATAATGTTGCCGTTTTTggaaatggc
aaaaatatttagaattcCCG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002522	XLOC_002522	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004479-exon-sc0000045-1491911889:136405..136535	TCONS_00004479-exon-sc0000045-1491911889:136405..136535	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1510915933:136405..136535	TCONS_00004479-exon-sc0000045-1510915933:136405..136535	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1575043694:136405..136535	TCONS_00004479-exon-sc0000045-1575043694:136405..136535	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1491911889:137672..137723	TCONS_00004479-exon-sc0000045-1491911889:137672..137723	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1510915933:137672..137723	TCONS_00004479-exon-sc0000045-1510915933:137672..137723	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1575043694:137672..137723	TCONS_00004479-exon-sc0000045-1575043694:137672..137723	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1491911889:141414..141689	TCONS_00004479-exon-sc0000045-1491911889:141414..141689	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1510915933:141414..141689	TCONS_00004479-exon-sc0000045-1510915933:141414..141689	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1575043694:141414..141689	TCONS_00004479-exon-sc0000045-1575043694:141414..141689	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1491911889:142644..143124	TCONS_00004479-exon-sc0000045-1491911889:142644..143124	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1510915933:142644..143124	TCONS_00004479-exon-sc0000045-1510915933:142644..143124	Clytia hemisphaerica	exon
TCONS_00004479-exon-sc0000045-1575043694:142644..143124	TCONS_00004479-exon-sc0000045-1575043694:142644..143124	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000045	supercontig	sc0000045:136405..143124 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.180534	0.0777475	0.277332	0	0.108695	0	0	1.15913	1.59834	0.00300392	0.00831601	0	0.418583	1.11143	1.51471	1.302	0.929982	0	0	0.133824	0.115788	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00004479 vs. Swiss-Prot (Human)

BLAST of TCONS_00004479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00004479 (transcript) - C. hemisphaerica