TCONS_00004478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004478
Unique NameTCONS_00004478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3316

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004478 ID=TCONS_00004478|Name=TCONS_00004478|organism=Clytia hemisphaerica|type=transcript|length=3316bp
CATTGCATTGAACACTTCCCGCAGTCTTAATCGAGTCAAATTTTTAACAT
GTTTATGTTATTTCTACAGCGACGGACCTGGTGTGAAAAGTGGAAAAACG
TGAtttgttaaaaaaagatttcctaTTGGAAGTAAAGTACATTTTGATGT
GATAGCTCAAGCTTCATAATGCCCAAGTGTATATGCCAAATTTGCCAGTG
TGGGAAGCATCGATGTCCCCATTACATGACACAGCCCAAGTCCACCAAAG
CTAAAGGACCATGTCAATTCTCAGAGTACCAAACACGTTACAAAGGTGAC
GCAAGCAAGATTAGAGATCCCATCCGCAAACCTGATGATCAATTGAAGAA
TGAAGGACAAGTCGACTATAATACAACTCATTCAGAGAAATTTCCAGCGC
ATCAAATCGAAAAACGAAACAATGAGCGGCCACAACAAATGTACGTGAAG
AATAGTGCACCCATGGAATTGAGCACAGAGTATGGTACTAAATATCATGA
AGGGAAAGGTGAACACTATCCCTTACCAGACTACTTCAAGAGGAAATCAC
AGCCCTATGGAGATGGCAAAGATCGAGTTAAAAAATCAGTAACACACAAG
GATTTTGGTGAAAAACAAATCGGTGAAAAACCTCATATTCATAGATTGGA
AGATAATGTTCAGATGTCTGAAGATCCATTTGACCATCAGACTACTCATC
AATCTGATTTCACTCGCCTCCAACAAGCAAAAGAACCGACACATCGGAGA
CAGGATCAACTCAACCATTCAGGAACGGGAAGTTATGATACAACCAACAA
GGATCATTATGTTCAGCACAAAACAGGAGCCAGACACCAAAAACCACCCG
CTGCAGTTTACCGCCCAAATGAACGACCCTTTGAAGGCAAATCACTGATG
AAATCTGATTATCAACAGCATACTAATCGCGATAAATCGGAGATGATCAA
ATATGATAATAATTTGTTTATGTCTAAAGATCCTTTAGACCAAGAGACAA
CAAACAACTCCACCTATAAAAGCTGGGAAGTTCAAAGAAGACAGGTTCAA
GACGCTGGACCAACATATCGCAAACCACAaggcaaaatgaatttcaacaA
AACATCAGACGATTATAAACAGCATGGAAGCCAAGCTCAAGTCACTAAGC
GGCCGCGCGACAGTCTAGACTGGATGGATAAACGATTTAATGGGATGACA
TCATACAAAGATGGTTACATTACACATGAAGGTCACGTGCCAGAGAAAAG
TATGGCACGTGAGCGTGAATACCACCAATCAGAGGCTCCCTTTGATGCGG
TCACAGAGTCGAAGGACCAATACAAACGCTTGAATGCGGCGCCATCAAAA
CCGGTGAAGCGTGACCATGAAATGATGGATCGAAGCGCGCCTTTCGCCTC
TGATACCTCTTACGATAACCATTTCAACGAAAAGAAGCTCCCAGAATGCC
CTTCCAAAGCCATAGTGGCTAACAATTTCGCTGGCTACAAATTCAAAGAT
GATTTCACATTAGGTCATCGTTATTTGGTACCTGACTCCGCCCGTCTTGG
GTCGCCATCCGCCCCTTTACCACCCATTGGCCAACAACATAAGCAATCTC
AAGGTGAGAGATACGTTGCTGTTCATTGAAACACTTTGGTTAACCTTTTT
TGACACTTAGttaatttgaatttcttcaagTTTTGACGTGAACTTTAAAT
GTAGATGCATACAACGCTatatttgaaacattttaaTGGCGTACGCAACA
ACCCAATAGAGATGAGCCAATAGGATGAAAGAGAATCCCACTTCAGTTGA
GTGGCATATTTTGCTACAGATGCTACAGCTTTCTTCATCCTCTGACCACT
GTTCAAATCTCTGTCTAAATGTTCCTGTAAACAAGAAAGAAAGCCAAAGT
AAAGTGCTCATTTTTTTGTGTAGCACTTCTGCAAAAAATTCAACTGACTT
TAATTAAAATGACCTTatcattttatcaaattatcacGCCGATTGAAAAG
ATGTGGGTGATAAGCACTAATACCATGATTTATATTGTATTAAAATATCT
ACACAGTCTGACACAGTCCTACTTAAATACACAGGCTGCAAAATTATAGT
CTGAatacaaatcacgcttttactcgagaTTTTTATGTGCTTTTTACATg
gcatttatttctgattggttcgaatttactgacactaataaagttatcag
ctgtaagttgtgaTGGGAATACAATCACGTGaaatttttcgagtaatcac
atgttttgactgccgCATTGATTTAATTTTCCAACCCGTGTATTATGTAC
CGAAACTTaagtgaaaaaatttactccCCCCTTTGGGTTTTTCGTAAAGG
CTGACCTTAATTACAAGCATTGACATTTAGTTGGTCTTATCGGTTAATCG
CACGTAGAGAATACATTTAGAATGAATTTTCCATGTAGGGAGGTAACAGT
TTGGGAAAGGGGAATTTCAAGAATGGAGTAAGTTAGGCATTTTATATACC
AACAAAATTGCTTACACTTCAGAGTTGATtgacaaaataaattaaaatta
tttaattattcgTTTTTTAATGTTGTTTATATATAGTACCATTTTTTCTA
AAGTAAGCTCTTTACTTTGAATTGCCActattaaagggacataaaagtac
tgacgaaatttgtaaacaaaccgcgtgcagcgggatacaaaatcaaaaca
aatgtcacatttcaaaataaaaatatggctgattttgattgttttgattg
attttgattgtttcaattgttttacaagtttattttggacacgtgatttt
aattgttctctttaatgacacgtggttcgcgcaatgtttacattttacta
ctgttatgtccctttaaacccCTTTTTTCGTATGTAAAAGATAATGGTAT
TGTAGCTATTTTTGGAATTTGTATTTATAAAATATGcaccaaaattttgt
atttattgtacTTACTTTATTTTATAGCTTTAAGCAATTTTTTAATTGGg
atttttttggtaaatttgCACTTTTTTACACCATATATTTTTCAAGAGAA
CAGCCTAGTCTACTGTTGTTCAATAAAATTGACGATCGTTTCAAAGCAGC
CTGGCTTTGTGCgtgtaaacaatttttttgttagACTCGCACCATTGCAA
GATCATTAAAGGCTTGAGGTTTTCatttatttctaaaatttatAATCTGA
ATGTTAATAATTATGACTGCACCAAAACTTTGTATAGAATTTTTAACATC
AATtgtcttttatttattttagcataattaaaagaaaaaagaaaagaaaa
ttacaaattctttaaa
Run BLAST on NCBI

protein sequence of TCONS_00004478-protein

>TCONS_00004478-protein ID=TCONS_00004478-protein|Name=TCONS_00004478-protein|organism=Clytia hemisphaerica|type=polypeptide|length=486bp
MPKCICQICQCGKHRCPHYMTQPKSTKAKGPCQFSEYQTRYKGDASKIRD
PIRKPDDQLKNEGQVDYNTTHSEKFPAHQIEKRNNERPQQMYVKNSAPME
LSTEYGTKYHEGKGEHYPLPDYFKRKSQPYGDGKDRVKKSVTHKDFGEKQ
IGEKPHIHRLEDNVQMSEDPFDHQTTHQSDFTRLQQAKEPTHRRQDQLNH
SGTGSYDTTNKDHYVQHKTGARHQKPPAAVYRPNERPFEGKSLMKSDYQQ
HTNRDKSEMIKYDNNLFMSKDPLDQETTNNSTYKSWEVQRRQVQDAGPTY
RKPQGKMNFNKTSDDYKQHGSQAQVTKRPRDSLDWMDKRFNGMTSYKDGY
ITHEGHVPEKSMAREREYHQSEAPFDAVTESKDQYKRLNAAPSKPVKRDH
EMMDRSAPFASDTSYDNHFNEKKLPECPSKAIVANNFAGYKFKDDFTLGH
RYLVPDSARLGSPSAPLPPIGQQHKQSQGERYVAVH
Run BLAST on NCBI

transcript from alignment at sc0000045:122436..130089+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004478 ID=TCONS_00004478|Name=TCONS_00004478|organism=Clytia hemisphaerica|type=transcript|length=7654bp|location=Sequence derived from alignment at sc0000045:122436..130089+ (Clytia hemisphaerica)
CATTGCATTGAACACTTCCCGCAGTCTTAATCGAGTCAAATTTTTAACAT GTTTATGTTATTTCTACAGCGACGGACCTGGTGTGAAAAGTGGAAAAACG TGAtttgttaaaaaaagatttcctaTTGGAAGTAAAGTACATTTTGATGT GATAGCTCAAGCTTCATAATGCCCAAGTGTATATGCCAAATTTGCCAGTG TGGGTAAGTTGATCACTATATGtttctgttttcaaaaattatcaccTTAT AAAACTGGGTTGCTGGGGGGTAATCTGGGAacgttttgttgtttttcagc tggtgtttttttcatgatatttttcCCAAAGGGAGCACTTTACTTTGGAT CTGGCCTTTCACACCAAAGCACTAACAGACAGATCAGTACACTGTGCAAT TTTGAGCTTGATGTTTTGTCAAGAAATTGCAGTATTAAACAAGAGAAAAT AGTCAAAGATTAAAGCAATTTActgttaaaatttcaattacAATTGATAG CAAGTTGTACAGAGTTGTAGGGCTGTCAAAGTTTTTAGCTTTCATGAGCT AAATCTTGGTACCATATTCAACTTTCTCCCAAGTTACCCtccttgaaaat gaagaagaagaaattagcAACATCACAATGGAGCACAACATCATCACCCC TCAGAGGTTTTTTTACACCAATTTTAACAATGGAGAAGTAGAGAGCCCTA CCAGTATTATAAGTCCAGTATATTTTTGGTGTCAAGAGTTTGTGTACTGT AATGTAAAACATAACAAACACCAGACAGTTTTGTCCTGCATAATTTGATG ACCCACACAAAGTTTAATCATTCCTACAGTTAGCTAGGTAGgtaaattat tgaaatttgtTAACAGTGAttctcaagttataagcttttgaagtttaaaa taactttttgaaaggtaaaaaaaagGTCACAACGAGTCTGATAAAGATTT TCATTAGTTTGGACAAagagtaccgtaagttggtctaatatcttCTTTAA GGATAGGAATAATGTGAAACTTGGAATCACTGATTTAAAAAGGATTTTTC TTCCCTGACCCCTAAGCAATGAAAAATAGTTTAGACCCTTCTATTATTTT CATCTCTAAAAAAGGGAATCAGATGAGGAAttttgacattagaccaagtt acggtaccaTCAACCAATCTTTGTATTGGANTAAGCAATGAAAAATAGTT TAGACCCTTCTATTATTTTCATCTCTAAAAAAGGGAATCAGATGAGGAAt tttgacattagaccaagttacggtaccaTCAAACCAATCTTTGTATTGGT CTTTGAGTATTTTGAGGGTATGATGGTGGGAGTCACCTCAAGAAACTAGT TTTTGCATGAGCAAACTTTTTATGGATTTCTAAGGTTTAtgagtcaaaat atttttgtttttttttatcaaagaaaagAATTGGAACCTAAGACCAGTAA AGTATTCATAAAGTGTCACTATTTTTATGAAACAGAATTTGTTATCCTTT CattattcattttttcatttagtTAAATAGTTGAGAGGAAAACAGGCTGA ATTAGTTCTTGAATAAATAATGAACTTCTAGCATGAGGTTTATTTTTACT ATTTAAAAAAACCAGCTATTGAACgaagaagttttttctttctGCCCTGT TCTCTCTCTGCCCCtgctaaacaaaaccaaaataATGATGTTTTTGCATA TATTGAATCAAATCAAAGTGTTCAAGTTCTCTGTTGTAACAAAAACATTT AAACTATTTAACTTCATCCATTTAACTTCGCCATCACAATTAACATACCT TTTAAAAGGTTACATGAATTTGGgataaaaaatccaaaaaattttgttCC ATTAAAAAGCTCCCACACTTTGAACCCACCTTTTGTAGTTGATGAAAGTA TATCTACCTATACAAGCAGCATGGAATCCTTCCTTCctaaatgacccccc ccccttttagcATCCCCTTATGTTGAAAATATCCATCCCCAAGGTGTATG TTCTTTCAAAACCTGGAGATGATGAGTATTTTGATTATTGCTTACCCCTT GTTTAACAGACTTTTAGAATTGCCTTTAAATTATCAATACAAACTTAGTA CTGGCTTTCTTTTGCCTATgtttatgaaaatgtttttgtcAAGTTTTGTA TTGTCCATCattagatgaaaaaaaaaaaactaagtgCATCAGGAAGGTAT ACAagtttgtcaagatattgtgagctaatggttaaagaatttttattaat tctttttttattctacagcataacttttgattgacagGACCAATTTTAGA TAtttatataccaaaatttaggatttcctctatacaataaaaaagaatca acaaaaaaccttttaaactGTAAGCTCACAGTATCTTGACAAACCTGAAT ACTTTTTTTGGGTGcacctgaaaataaaataaatagatTCTATGCAATGA TGTAAACAATATCTTTAGGGAATTTCAGAAAGGGATATAGTTTCCTTTCA GCATAAGCTTTATTAACCTACTTGACTAATTTTGTTAAAGCTCCtatcaa aattaagttttctagttctagttctagggCTTATGTTATATATGAAATAA TTGGTAGTAATGAATAATGATGATGAAAAATACATATATGTTTTGAGGCT AGTTAGTTGACATTGAATGATTGGAAAGTGATATCAATACTAATTTGATA TAATGCTAGAGATAATAGATTTTTATTGTCATCAAGTTGGTTAAAACACT TTAATTAAAATACAGAACTGGAAAAACTTCCAATTTCGATTTTAGGAAGC ATCGATGTCCCCATTACATGACACAGCCCAAGTCCACCAAAGCTAAAGGA CCATGTCAATTCTCAGAGTACCAAACACGTTACAAAGGTGACGCAAGCAA GATTAGAGATCCCATCCGCAAACCTGATGATCAATTGAAGAATGAAGGAC AAGTCGACTATAATACAACTCATTCAGAGAAATTTCCAGCGCATCAAATC GAAAAACGAAAGTAGGTATTTTTCGATTCTCACAGACCCTAGTTGCGGTC AATGATTTTGCTATTTAACGTTTAAGTTTTGACTATTATGTAAATTCGTG AAAATAACCTAAAAGGCACTTTATAACATGGgactaaattttgaatttac agTATTAAATTGCGTCCCCGTATATTGACATAAGTGAAAGCAGGTATCTT TCCCTTTGAAACAATTGGAATATTTATTTCTAATATCGATCAATTGTGTT TTTTAGCAATGAGCGGCCACAACAAATGTACGTGAAGAATAGTGCACCCA TGGAATTGAGCACAGAGTATGGTACTAAATATCATGAAGGTAAATTGAGA TATTAGAATCTGATAACATGCTTGCATTTTTGGCATCTGTTTATTAATTC AATAAAGTGCAATGAAAAAGGTGGCTTTACAATGcttaaaattttctgtt tttatgaagaaaaaacgTTCGAGAGATTTGGTGCACTGTCAGAAAATTGC AAACCACACTACCGAAGCATCAAGATACTTCTGGTGTGGATCTTGAACCT TTTCTAAGCTCTGGTTTAGACGGCCCATATTTTGTCCTCCCTAATCTTAA TTGTGAATTGAAATAGGGCATAAAGTTGACTGTGGGGAGTTAAATGTATT GCTCcccttttttgacgtcaatgccaATAATATTGCCACTGCCAACTCTC TGCATTCCGCCCACTTTTTGAGAATAAACAGGGCAGAAAGTCGATTacta ttttatttaaatttacagTAGTTATGAAAAAACTAtaataattatcattt tctctCCAATATCATTGAGTTTATTCTATCTGCATTGTTCTTATCAGGGA AAGGTGAACACTATCCCTTACCAGACTACTTCAAGAGGAAATCACAGCCC TATGGAGATGGCAAAGATCGAGTTAAAAAATCAGTAACACACAAGGATTT TGGTGAAAAACAAATCGGTGAAAAACCTCATATTCATAGATTGGAAGATA ATGTTCAGATGTCTGAAGATCCATTTGACCATCAGACTACTCATCAATCT GATTTCACTCGCCTCCAACAAGCAAAAGAACCGACACATCGGAGACAGGA TCAACTCAACCATTCAGGTGAATAAAAAACTGTTGATGTAATAGTATCTG CTAGACCAGAacaataaatttctttttaatcaaatGTTTATGTTATGATC CTTACATAAATTGATAGATATTTAAGCTATACTTTACTTGGCACTCAACG AGCATACAATTATAATTTAAGATTGACTGGTGCATCTCGAAAGTACTGTT TCCACGAGGCCTTTTAAGTAgcctgtacacagacccgatatctacggcta atttcaaaattactaCAAAAGTCCTACGAAACGATAAATGTGAGATATAC TCGGGTACAGAGTACCTTGTTACCACAAATGTGGTAACTTTTACTTTTCG TAGATCTAAAGAATTACAACAAGAATTTACTTTTTGTCAATATCAAGAGT TTTAGACGTTTCAACCCTCTTAATCATGTATGTTTTTTCAGGAACGGGAA GTTATGATACAACCAACAAGGATCATTATGTTCAGCACAAAACAGGAGCC AGACACCAAAAACCACCCGCTGCAGTTTACCGCCCAAATGAACGACCCTT TGAAGGCAAATCACTGATGAAATCTGATTATCAACAGCATACTAATCGCG ATAAATCGGAGATGATCAAATATGATAATAATTTGTTTATGTCTAAAGAT CCTTTAGACCAAGAGACAACAAACAACTCCACCTATAAAAGCTGGGAAGT TCAAAGAAGACAGGTACTTCATATAAATCAGATTCTCTctgaaaattata attaaaaTGCTTACACGTTTCCATTAGTTAAGGAAAGTATCGAGGACTGT GTTAATGTTATGTATATCTCTTTAGAGGTGATCATGTATAAAATAGATCG AGTTAATGGCTATCAGTTGGTGATACCtctcttttgattgttttataTAG AAATTTGTGCTCGCGTACGACGCGGGGATAGAGAgaaaggtgtttttttt ttttataaatgctGTGTAAGTATAATGGTAGGAGACATATTAAACGATGT CCTTTAAAGTACCACGAGGACCTAGCCTCGTTAGGCTGGAATgcttggtt tgccgtcacccgaccctagatttttgaggtcggtcggtcggtcggtcggt cggtcggaaaaaaaatttattttagtcATTCATAGaatttttgaagaaga aaaactcTCTTCGTCGAAATAGCAATAAAAGTTTTTAGGTCGGTAAGTTT AGAGAAGAGTCGGTCGGCTGACAGTAAACGAAcatttttttaagtccagc cttatAACGAATTACTTTTTCCATTATCAAAGGTTCAAGACGCTGGACCA ACATATCGCAAACCACAaggcaaaatgaatttcaacaAAACATCAGACGA TTATAAACAGCATGGAAGCCAAGCTCAAGTCACTAAGCGGCCGCGCGACA GTCTAGACTGGATGGATAAACGATTTAATGGGATGACATCATACAAAGAT GGTTACATTACACATGAAGGTCACGTGCCAGAGAAAAGTATGGCACGTGA GCGTGAATACCACCAATCAGAGGCTCCCTTTGATGCGGTCACAGAGTCGA AGGACCAATACAAACGCTTGAATGCGGCGCCATCAAAACCGGTGAAGCGT GACCATGAAATGATGGATCGAAGCGCGCCTTTCGCCTCTGATACCTCTTA CGATAACCATTTCAACGAAAAGAAGCTCCCAGAATGCCCTTCCAAAGCCA TAGTGGCTAACAATTTCGCTGGCTACAAATTCAAAGATGATTTCACATTA GGTCATCGTTATTTGGTACCTGACTCCGCCCGTCTTGGGTCGCCATCCGC CCCTTTACCACCCATTGGCCAACAACATAAGCAATCTCAAGGTGAGAGAT ACGTTGCTGTTCATTGAAACACTTTGGTTAACCTTTTTTGACACTTAGtt aatttgaatttcttcaagTTTTGACGTGAACTTTAAATGTAGATGCATAC AACGCTatatttgaaacattttaaTGGCGTACGCAACAACCCAATAGAGA TGAGCCAATAGGATGAAAGAGAATCCCACTTCAGTTGAGTGGCATATTTT GCTACAGATGCTACAGCTTTCTTCATCCTCTGACCACTGTTCAAATCTCT GTCTAAATGTTCCTGTAAACAAGAAAGAAAGCCAAAGTAAAGTGCTCATT TTTTTGTGTAGCACTTCTGCAAAAAATTCAACTGACTTTAATTAAAATGA CCTTatcattttatcaaattatcacGCCGATTGAAAAGATGTGGGTGATA AGCACTAATACCATGATTTATATTGTATTAAAATATCTACACAGTCTGAC ACAGTCCTACTTAAATACACAGGCTGCAAAATTATAGTCTGAatacaaat cacgcttttactcgagaTTTTTATGTGCTTTTTACATggcatttatttct gattggttcgaatttactgacactaataaagttatcagctgtaagttgtg aTGGGAATACAATCACGTGaaatttttcgagtaatcacatgttttgactg ccgCATTGATTTAATTTTCCAACCCGTGTATTATGTACCGAAACTTaagt gaaaaaatttactccCCCCTTTGGGTTTTTCGTAAAGGCTGACCTTAATT ACAAGCATTGACATTTAGTTGGTCTTATCGGTTAATCGCACGTAGAGAAT ACATTTAGAATGAATTTTCCATGTAGGGAGGTAACAGTTTGGGAAAGGGG AATTTCAAGAATGGAGTAAGTTAGGCATTTTATATACCAACAAAATTGCT TACACTTCAGAGTTGATtgacaaaataaattaaaattatttaattattcg TTTTTTAATGTTGTTTATATATAGTACCATTTTTTCTAAAGTAAGCTCTT TACTTTGAATTGCCActattaaagggacataaaagtactgacgaaatttg taaacaaaccgcgtgcagcgggatacaaaatcaaaacaaatgtcacattt caaaataaaaatatggctgattttgattgttttgattgattttgattgtt tcaattgttttacaagtttattttggacacgtgattttaattgttctctt taatgacacgtggttcgcgcaatgtttacattttactactgttatgtccc tttaaacccCTTTTTTCGTATGTAAAAGATAATGGTATTGTAGCTATTTT TGGAATTTGTATTTATAAAATATGcaccaaaattttgtatttattgtacT TACTTTATTTTATAGCTTTAAGCAATTTTTTAATTGGgatttttttggta aatttgCACTTTTTTACACCATATATTTTTCAAGAGAACAGCCTAGTCTA CTGTTGTTCAATAAAATTGACGATCGTTTCAAAGCAGCCTGGCTTTGTGC gtgtaaacaatttttttgttagACTCGCACCATTGCAAGATCATTAAAGG CTTGAGGTTTTCatttatttctaaaatttatAATCTGAATGTTAATAATT ATGACTGCACCAAAACTTTGTATAGAATTTTTAACATCAATtgtctttta tttattttagcataattaaaagaaaaaagaaaagaaaattacaaattctt taaa

Coding sequence (CDS) from alignment at sc0000045:122436..130089+

>TCONS_00004478 ID=TCONS_00004478|Name=TCONS_00004478|organism=Clytia hemisphaerica|type=CDS|length=8766bp|location=Sequence derived from alignment at sc0000045:122436..130089+ (Clytia hemisphaerica)
ATGCCCAAGTGTATATGCCAAATTTGCCAGTGTGGGAAGCATCGATGTCC
CCATTACATGACACAGCCCAAGTCCACCAAAGCTAAAGGACCATGTCAAT
TCTCAGAGTACCAAACACGTTACAAAGGTGACGCAAGCAAGATTAGAGAT
CCCATCCGCAAACCTGATGATCAATTGAAGAATGAAGGACAAGTCGACTA
TAATACAACTCATTCAGAGAAATTTCCAGCGCATCAAATCGAAAAACGAA
ACAATGAGCGGCCACAACAAATGTACGTGAAGAATAGTGCACCCATGGAA
TTGAGCACAGAGTATGGTACTAAATATCATGAAGGGAAAGGTGAACACTA
TCCCTTACCAGACTACTTCAAGAGGAAATCACAGCCCTATGGAGATGGCA
AAGATCGAGTTAAAAAATCAGTAACACACAAGGATTTTGGTGAAAAACAA
ATCGGTGAAAAACCTCATATTCATAGATTGGAAGATAATGTTCAGATGTC
TGAAGATCCATTTGACCATCAGACTACTCATCAATCTGATTTCACTCGCC
TCCAACAAGCAAAAGAACCGACACATCGGAGACAGGATCAACTCAACCAT
TCAGGAACGGGAAGTTATGATACAACCAACAAGGATCATTATGTTCAGCA
CAAAACAGGAGCCAGACACCAAAAACCACCCGCTGCAGTTTACCGCCCAA
ATGAACGACCCTTTGAAGGCAAATCACTGATGAAATCTGATTATCAACAG
CATACTAATCGCGATAAATCGGAGATGATCAAATATGATAATAATTTGTT
TATGTCTAAAGATCCTTTAGACCAAGAGACAACAAACAACTCCACCTATA
AAAGCTGGGAAGTTCAAAGAAGACAGGTTCAAGACGCTGGACCAACATAT
CGCAAACCACAaggcaaaatgaatttcaacaAAACATCAGACGATTATAA
ACAGCATGGAAGCCAAGCTCAAGTCACTAAGCGGCCGCGCGACAGTCTAG
ACTGGATGGATAAACGATTTAATGGGATGACATCATACAAAGATGGTTAC
ATTACACATGAAGGTCACGTGCCAGAGAAAAGTATGGCACGTGAGCGTGA
ATACCACCAATCAGAGGCTCCCTTTGATGCGGTCACAGAGTCGAAGGACC
AATACAAACGCTTGAATGCGGCGCCATCAAAACCGGTGAAGCGTGACCAT
GAAATGATGGATCGAAGCGCGCCTTTCGCCTCTGATACCTCTTACGATAA
CCATTTCAACGAAAAGAAGCTCCCAGAATGCCCTTCCAAAGCCATAGTGG
CTAACAATTTCGCTGGCTACAAATTCAAAGATGATTTCACATTAGGTCAT
CGTTATTTGGTACCTGACTCCGCCCGTCTTGGGTCGCCATCCGCCCCTTT
ACCACCCATTGGCCAACAACATAAGCAATCTCAAGGTGAGAGATACGTTG
CTGTTCATTGAATGCCCAAGTGTATATGCCAAATTTGCCAGTGTGGGAAG
CATCGATGTCCCCATTACATGACACAGCCCAAGTCCACCAAAGCTAAAGG
ACCATGTCAATTCTCAGAGTACCAAACACGTTACAAAGGTGACGCAAGCA
AGATTAGAGATCCCATCCGCAAACCTGATGATCAATTGAAGAATGAAGGA
CAAGTCGACTATAATACAACTCATTCAGAGAAATTTCCAGCGCATCAAAT
CGAAAAACGAAACAATGAGCGGCCACAACAAATGTACGTGAAGAATAGTG
CACCCATGGAATTGAGCACAGAGTATGGTACTAAATATCATGAAGGGAAA
GGTGAACACTATCCCTTACCAGACTACTTCAAGAGGAAATCACAGCCCTA
TGGAGATGGCAAAGATCGAGTTAAAAAATCAGTAACACACAAGGATTTTG
GTGAAAAACAAATCGGTGAAAAACCTCATATTCATAGATTGGAAGATAAT
GTTCAGATGTCTGAAGATCCATTTGACCATCAGACTACTCATCAATCTGA
TTTCACTCGCCTCCAACAAGCAAAAGAACCGACACATCGGAGACAGGATC
AACTCAACCATTCAGGAACGGGAAGTTATGATACAACCAACAAGGATCAT
TATGTTCAGCACAAAACAGGAGCCAGACACCAAAAACCACCCGCTGCAGT
TTACCGCCCAAATGAACGACCCTTTGAAGGCAAATCACTGATGAAATCTG
ATTATCAACAGCATACTAATCGCGATAAATCGGAGATGATCAAATATGAT
AATAATTTGTTTATGTCTAAAGATCCTTTAGACCAAGAGACAACAAACAA
CTCCACCTATAAAAGCTGGGAAGTTCAAAGAAGACAGGTTCAAGACGCTG
GACCAACATATCGCAAACCACAaggcaaaatgaatttcaacaAAACATCA
GACGATTATAAACAGCATGGAAGCCAAGCTCAAGTCACTAAGCGGCCGCG
CGACAGTCTAGACTGGATGGATAAACGATTTAATGGGATGACATCATACA
AAGATGGTTACATTACACATGAAGGTCACGTGCCAGAGAAAAGTATGGCA
CGTGAGCGTGAATACCACCAATCAGAGGCTCCCTTTGATGCGGTCACAGA
GTCGAAGGACCAATACAAACGCTTGAATGCGGCGCCATCAAAACCGGTGA
AGCGTGACCATGAAATGATGGATCGAAGCGCGCCTTTCGCCTCTGATACC
TCTTACGATAACCATTTCAACGAAAAGAAGCTCCCAGAATGCCCTTCCAA
AGCCATAGTGGCTAACAATTTCGCTGGCTACAAATTCAAAGATGATTTCA
CATTAGGTCATCGTTATTTGGTACCTGACTCCGCCCGTCTTGGGTCGCCA
TCCGCCCCTTTACCACCCATTGGCCAACAACATAAGCAATCTCAAGGTGA
GAGATACGTTGCTGTTCATTGAATGCCCAAGTGTATATGCCAAATTTGCC
AGTGTGGGAAGCATCGATGTCCCCATTACATGACACAGCCCAAGTCCACC
AAAGCTAAAGGACCATGTCAATTCTCAGAGTACCAAACACGTTACAAAGG
TGACGCAAGCAAGATTAGAGATCCCATCCGCAAACCTGATGATCAATTGA
AGAATGAAGGACAAGTCGACTATAATACAACTCATTCAGAGAAATTTCCA
GCGCATCAAATCGAAAAACGAAACAATGAGCGGCCACAACAAATGTACGT
GAAGAATAGTGCACCCATGGAATTGAGCACAGAGTATGGTACTAAATATC
ATGAAGGGAAAGGTGAACACTATCCCTTACCAGACTACTTCAAGAGGAAA
TCACAGCCCTATGGAGATGGCAAAGATCGAGTTAAAAAATCAGTAACACA
CAAGGATTTTGGTGAAAAACAAATCGGTGAAAAACCTCATATTCATAGAT
TGGAAGATAATGTTCAGATGTCTGAAGATCCATTTGACCATCAGACTACT
CATCAATCTGATTTCACTCGCCTCCAACAAGCAAAAGAACCGACACATCG
GAGACAGGATCAACTCAACCATTCAGGAACGGGAAGTTATGATACAACCA
ACAAGGATCATTATGTTCAGCACAAAACAGGAGCCAGACACCAAAAACCA
CCCGCTGCAGTTTACCGCCCAAATGAACGACCCTTTGAAGGCAAATCACT
GATGAAATCTGATTATCAACAGCATACTAATCGCGATAAATCGGAGATGA
TCAAATATGATAATAATTTGTTTATGTCTAAAGATCCTTTAGACCAAGAG
ACAACAAACAACTCCACCTATAAAAGCTGGGAAGTTCAAAGAAGACAGGT
TCAAGACGCTGGACCAACATATCGCAAACCACAaggcaaaatgaatttca
acaAAACATCAGACGATTATAAACAGCATGGAAGCCAAGCTCAAGTCACT
AAGCGGCCGCGCGACAGTCTAGACTGGATGGATAAACGATTTAATGGGAT
GACATCATACAAAGATGGTTACATTACACATGAAGGTCACGTGCCAGAGA
AAAGTATGGCACGTGAGCGTGAATACCACCAATCAGAGGCTCCCTTTGAT
GCGGTCACAGAGTCGAAGGACCAATACAAACGCTTGAATGCGGCGCCATC
AAAACCGGTGAAGCGTGACCATGAAATGATGGATCGAAGCGCGCCTTTCG
CCTCTGATACCTCTTACGATAACCATTTCAACGAAAAGAAGCTCCCAGAA
TGCCCTTCCAAAGCCATAGTGGCTAACAATTTCGCTGGCTACAAATTCAA
AGATGATTTCACATTAGGTCATCGTTATTTGGTACCTGACTCCGCCCGTC
TTGGGTCGCCATCCGCCCCTTTACCACCCATTGGCCAACAACATAAGCAA
TCTCAAGGTGAGAGATACGTTGCTGTTCATTGAATGCCCAAGTGTATATG
CCAAATTTGCCAGTGTGGGAAGCATCGATGTCCCCATTACATGACACAGC
CCAAGTCCACCAAAGCTAAAGGACCATGTCAATTCTCAGAGTACCAAACA
CGTTACAAAGGTGACGCAAGCAAGATTAGAGATCCCATCCGCAAACCTGA
TGATCAATTGAAGAATGAAGGACAAGTCGACTATAATACAACTCATTCAG
AGAAATTTCCAGCGCATCAAATCGAAAAACGAAACAATGAGCGGCCACAA
CAAATGTACGTGAAGAATAGTGCACCCATGGAATTGAGCACAGAGTATGG
TACTAAATATCATGAAGGGAAAGGTGAACACTATCCCTTACCAGACTACT
TCAAGAGGAAATCACAGCCCTATGGAGATGGCAAAGATCGAGTTAAAAAA
TCAGTAACACACAAGGATTTTGGTGAAAAACAAATCGGTGAAAAACCTCA
TATTCATAGATTGGAAGATAATGTTCAGATGTCTGAAGATCCATTTGACC
ATCAGACTACTCATCAATCTGATTTCACTCGCCTCCAACAAGCAAAAGAA
CCGACACATCGGAGACAGGATCAACTCAACCATTCAGGAACGGGAAGTTA
TGATACAACCAACAAGGATCATTATGTTCAGCACAAAACAGGAGCCAGAC
ACCAAAAACCACCCGCTGCAGTTTACCGCCCAAATGAACGACCCTTTGAA
GGCAAATCACTGATGAAATCTGATTATCAACAGCATACTAATCGCGATAA
ATCGGAGATGATCAAATATGATAATAATTTGTTTATGTCTAAAGATCCTT
TAGACCAAGAGACAACAAACAACTCCACCTATAAAAGCTGGGAAGTTCAA
AGAAGACAGGTTCAAGACGCTGGACCAACATATCGCAAACCACAaggcaa
aatgaatttcaacaAAACATCAGACGATTATAAACAGCATGGAAGCCAAG
CTCAAGTCACTAAGCGGCCGCGCGACAGTCTAGACTGGATGGATAAACGA
TTTAATGGGATGACATCATACAAAGATGGTTACATTACACATGAAGGTCA
CGTGCCAGAGAAAAGTATGGCACGTGAGCGTGAATACCACCAATCAGAGG
CTCCCTTTGATGCGGTCACAGAGTCGAAGGACCAATACAAACGCTTGAAT
GCGGCGCCATCAAAACCGGTGAAGCGTGACCATGAAATGATGGATCGAAG
CGCGCCTTTCGCCTCTGATACCTCTTACGATAACCATTTCAACGAAAAGA
AGCTCCCAGAATGCCCTTCCAAAGCCATAGTGGCTAACAATTTCGCTGGC
TACAAATTCAAAGATGATTTCACATTAGGTCATCGTTATTTGGTACCTGA
CTCCGCCCGTCTTGGGTCGCCATCCGCCCCTTTACCACCCATTGGCCAAC
AACATAAGCAATCTCAAGGTGAGAGATACGTTGCTGTTCATTGAATGCCC
AAGTGTATATGCCAAATTTGCCAGTGTGGGAAGCATCGATGTCCCCATTA
CATGACACAGCCCAAGTCCACCAAAGCTAAAGGACCATGTCAATTCTCAG
AGTACCAAACACGTTACAAAGGTGACGCAAGCAAGATTAGAGATCCCATC
CGCAAACCTGATGATCAATTGAAGAATGAAGGACAAGTCGACTATAATAC
AACTCATTCAGAGAAATTTCCAGCGCATCAAATCGAAAAACGAAACAATG
AGCGGCCACAACAAATGTACGTGAAGAATAGTGCACCCATGGAATTGAGC
ACAGAGTATGGTACTAAATATCATGAAGGGAAAGGTGAACACTATCCCTT
ACCAGACTACTTCAAGAGGAAATCACAGCCCTATGGAGATGGCAAAGATC
GAGTTAAAAAATCAGTAACACACAAGGATTTTGGTGAAAAACAAATCGGT
GAAAAACCTCATATTCATAGATTGGAAGATAATGTTCAGATGTCTGAAGA
TCCATTTGACCATCAGACTACTCATCAATCTGATTTCACTCGCCTCCAAC
AAGCAAAAGAACCGACACATCGGAGACAGGATCAACTCAACCATTCAGGA
ACGGGAAGTTATGATACAACCAACAAGGATCATTATGTTCAGCACAAAAC
AGGAGCCAGACACCAAAAACCACCCGCTGCAGTTTACCGCCCAAATGAAC
GACCCTTTGAAGGCAAATCACTGATGAAATCTGATTATCAACAGCATACT
AATCGCGATAAATCGGAGATGATCAAATATGATAATAATTTGTTTATGTC
TAAAGATCCTTTAGACCAAGAGACAACAAACAACTCCACCTATAAAAGCT
GGGAAGTTCAAAGAAGACAGGTTCAAGACGCTGGACCAACATATCGCAAA
CCACAaggcaaaatgaatttcaacaAAACATCAGACGATTATAAACAGCA
TGGAAGCCAAGCTCAAGTCACTAAGCGGCCGCGCGACAGTCTAGACTGGA
TGGATAAACGATTTAATGGGATGACATCATACAAAGATGGTTACATTACA
CATGAAGGTCACGTGCCAGAGAAAAGTATGGCACGTGAGCGTGAATACCA
CCAATCAGAGGCTCCCTTTGATGCGGTCACAGAGTCGAAGGACCAATACA
AACGCTTGAATGCGGCGCCATCAAAACCGGTGAAGCGTGACCATGAAATG
ATGGATCGAAGCGCGCCTTTCGCCTCTGATACCTCTTACGATAACCATTT
CAACGAAAAGAAGCTCCCAGAATGCCCTTCCAAAGCCATAGTGGCTAACA
ATTTCGCTGGCTACAAATTCAAAGATGATTTCACATTAGGTCATCGTTAT
TTGGTACCTGACTCCGCCCGTCTTGGGTCGCCATCCGCCCCTTTACCACC
CATTGGCCAACAACATAAGCAATCTCAAGGTGAGAGATACGTTGCTGTTC
ATTGAATGCCCAAGTGTATATGCCAAATTTGCCAGTGTGGGAAGCATCGA
TGTCCCCATTACATGACACAGCCCAAGTCCACCAAAGCTAAAGGACCATG
TCAATTCTCAGAGTACCAAACACGTTACAAAGGTGACGCAAGCAAGATTA
GAGATCCCATCCGCAAACCTGATGATCAATTGAAGAATGAAGGACAAGTC
GACTATAATACAACTCATTCAGAGAAATTTCCAGCGCATCAAATCGAAAA
ACGAAACAATGAGCGGCCACAACAAATGTACGTGAAGAATAGTGCACCCA
TGGAATTGAGCACAGAGTATGGTACTAAATATCATGAAGGGAAAGGTGAA
CACTATCCCTTACCAGACTACTTCAAGAGGAAATCACAGCCCTATGGAGA
TGGCAAAGATCGAGTTAAAAAATCAGTAACACACAAGGATTTTGGTGAAA
AACAAATCGGTGAAAAACCTCATATTCATAGATTGGAAGATAATGTTCAG
ATGTCTGAAGATCCATTTGACCATCAGACTACTCATCAATCTGATTTCAC
TCGCCTCCAACAAGCAAAAGAACCGACACATCGGAGACAGGATCAACTCA
ACCATTCAGGAACGGGAAGTTATGATACAACCAACAAGGATCATTATGTT
CAGCACAAAACAGGAGCCAGACACCAAAAACCACCCGCTGCAGTTTACCG
CCCAAATGAACGACCCTTTGAAGGCAAATCACTGATGAAATCTGATTATC
AACAGCATACTAATCGCGATAAATCGGAGATGATCAAATATGATAATAAT
TTGTTTATGTCTAAAGATCCTTTAGACCAAGAGACAACAAACAACTCCAC
CTATAAAAGCTGGGAAGTTCAAAGAAGACAGGTTCAAGACGCTGGACCAA
CATATCGCAAACCACAaggcaaaatgaatttcaacaAAACATCAGACGAT
TATAAACAGCATGGAAGCCAAGCTCAAGTCACTAAGCGGCCGCGCGACAG
TCTAGACTGGATGGATAAACGATTTAATGGGATGACATCATACAAAGATG
GTTACATTACACATGAAGGTCACGTGCCAGAGAAAAGTATGGCACGTGAG
CGTGAATACCACCAATCAGAGGCTCCCTTTGATGCGGTCACAGAGTCGAA
GGACCAATACAAACGCTTGAATGCGGCGCCATCAAAACCGGTGAAGCGTG
ACCATGAAATGATGGATCGAAGCGCGCCTTTCGCCTCTGATACCTCTTAC
GATAACCATTTCAACGAAAAGAAGCTCCCAGAATGCCCTTCCAAAGCCAT
AGTGGCTAACAATTTCGCTGGCTACAAATTCAAAGATGATTTCACATTAG
GTCATCGTTATTTGGTACCTGACTCCGCCCGTCTTGGGTCGCCATCCGCC
CCTTTACCACCCATTGGCCAACAACATAAGCAATCTCAAGGTGAGAGATA
CGTTGCTGTTCATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002521XLOC_002521Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004478-proteinTCONS_00004478-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004478-exon-sc0000045-1491911889:122436..122638TCONS_00004478-exon-sc0000045-1491911889:122436..122638Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1510915933:122436..122638TCONS_00004478-exon-sc0000045-1510915933:122436..122638Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1575043694:122436..122638TCONS_00004478-exon-sc0000045-1575043694:122436..122638Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1491911889:125231..125446TCONS_00004478-exon-sc0000045-1491911889:125231..125446Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1510915933:125231..125446TCONS_00004478-exon-sc0000045-1510915933:125231..125446Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1575043694:125231..125446TCONS_00004478-exon-sc0000045-1575043694:125231..125446Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1491911889:125692..125774TCONS_00004478-exon-sc0000045-1491911889:125692..125774Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1510915933:125692..125774TCONS_00004478-exon-sc0000045-1510915933:125692..125774Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1575043694:125692..125774TCONS_00004478-exon-sc0000045-1575043694:125692..125774Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1491911889:126283..126552TCONS_00004478-exon-sc0000045-1491911889:126283..126552Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1510915933:126283..126552TCONS_00004478-exon-sc0000045-1510915933:126283..126552Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1575043694:126283..126552TCONS_00004478-exon-sc0000045-1575043694:126283..126552Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1491911889:126977..127248TCONS_00004478-exon-sc0000045-1491911889:126977..127248Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1510915933:126977..127248TCONS_00004478-exon-sc0000045-1510915933:126977..127248Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1575043694:126977..127248TCONS_00004478-exon-sc0000045-1575043694:126977..127248Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1491911889:127818..130089TCONS_00004478-exon-sc0000045-1491911889:127818..130089Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1510915933:127818..130089TCONS_00004478-exon-sc0000045-1510915933:127818..130089Clytia hemisphaericaexon
TCONS_00004478-exon-sc0000045-1575043694:127818..130089TCONS_00004478-exon-sc0000045-1575043694:127818..130089Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:122436..130089 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.06496 3.10911 3.30103 3.5368 77.154 54.29 32.353 35.5184 21.4327 33.3744 19.7342 23.5442 22.0151 21.0948 5.57842 5.58481 4.08528 4.3727 35.7734 33.3954 16.2058 15.3906 5.36966 8.67396 7.94546 11.5678 14.7572 16.594 1.67091 1.75632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top