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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004477 ID=TCONS_00004477|Name=TCONS_00004477|organism=Clytia hemisphaerica|type=transcript|length=2094bp
GTTTAAGAACAAGTCAAGACACACAGATCTATAAAGTGAAACTCGTATTT
CATCATTCTGAAGTATCATAGATCTTTATCGTTTTTTGACGTCAACATTA
AAAAAATCGTTGGAAGTGCTGGATTCCATATATTTTGGGTATTTTGGCTT
GTACAAAAACCTCGGAAGTCAAGACTTAGAGCCACCCACGCATTCAAAAC
AGACAAACAATCAGATCGATAAGAACGGGAAAATACCTAATCACCGAATT
TCATAAACCAAAGTATACTACAAGAACACAAAATGAAGACAGGTCTCAAC
AGCAACTTGGCTGTCAAAAGTATCGGTCAATCTTTAGCCAAAATGGGGGA
CGATTTGAACAAGAAGTATACAAGCAATACAAATAATCGAAATACCAAAA
CAAACAACTCCACTTCAAGCACTCGAGGAGGATCCCTTAACTCGTCCACT
GGCAATAGTACctacttgaataaaaatagcAGCAAACTTGGCAAGAAAAA
TACCTCGATGTAATATGAACTGGTGTGCAATACAAGCAGAGGATTATGGG
ATATTGTTCACAATGACCTGGCACCAGGGTAGAAAGCTATACGAGGGGAT
ACCCTTTTGTAAATAATGGTGCGCGTCCAGAAAATAATGGTATTTGTATG
CGATGAGATTTGGACTTTATTGTTGAGTTGGGAGAATAATTCTGGTCTTA
TCTAATGACATACAAGAAGTCTAATTCTAATATTATCggtaaaataaaat
attgtGAAATCTGTTTTTTGATCTCAGTCACAGCTTGACTGGAAtcgatg
tacacgttttttttgtaagaacaaactatacataaaaaaacataaggctt
cgatggtcaaaatgttaagaacattgtaagactttgtggactctaaaaca
ctcaatttcttagaaaaattgacaaaatactcacaaaatggtaaaaataa
gaacatgttaaaaacaattttaagcttcaaattctcaaaaagttaagagc
atccgaaagcttcaaaaacttGTTCTCATAAAGAACGttatcaaaatata
ttataaaaggAAACAATGCCCTGAAATTTAATACGAATTTTGCACTTTAA
CACTGTTTTATTATGACCTTGTATTTGGATAAATTATTTGATTTCTGGGA
GAGCCAACTTTCGTTTTAACACACAATGACATGCGATATTGTCGACCTTC
ATACTTCTCTCTCATCAAGTAAATAAACTAACTTGTACATAGTGTAATAT
AATCAGACAATTATTGAGTAATTTTTTATGATGTTTGTTTGTAAATATGT
CTTcgcatgcaaaaaatcaaagaatcgaCAGTCaacattttgcaatttct
cATAAGCTTGCAACGAAATATAAGATTACAATACAGCCGTCTAGGAAAAT
ATTATGGGTGTAGCCTTACAGTATCATAAAAACTTCTGCCATTTCAAGAC
AGTAATAACACTGTTTATATAAGACCAATTTTACAGGAACAAAGAGAATC
TTAGAATGTCGAAATATAAGGACAACGCTGAGTCTGGTATAACTGCTCAG
ACTCAACGAGTGCAGCCTAAAATGCCTCAGTATTGCCCTGAAATACAGGA
CCTGAGAACAATTTGAGACTCAAAGTGAGAACAGTCGATCCTCATccaaa
acttcttttaaaaatcttaacATATagtcttacaaaaaaaaattagataa
agCAAGTTATTTAGAAATTCAAACGTAGGCATTCTTCCGTTTCTGAAGCT
CGTTAAGCAACGAGAGCCACGAGGTCTTATGTTATTTAATAGCTAAATCT
CATCCGCCCTTTTTCCCACGCCATTTTCGCCACGTTCTTTGTCATGAGAG
ttggaaagagaaaaaaaacaaccaaaatgcaCGCAAAAGTTTTATCAGAG
GAGTTCCTCTTAATAAGGCACAAGTTAGAATTTGAAAACACCCAAGTAAa
cctttttagtatttttgtcatCTACATGCTCAAAATATATTGTTAATTCT
TATATTtaattattttgtaaatattttgtataGATCATTGCAACCctata
attttttattaaataattatcaaaaaaaacaataatcagaaaaa Run BLAST on NCBI transcript from alignment at sc0000045:102992..106666+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004477 ID=TCONS_00004477|Name=TCONS_00004477|organism=Clytia hemisphaerica|type=transcript|length=3675bp|location=Sequence derived from alignment at sc0000045:102992..106666+ (Clytia hemisphaerica)
GTTTAAGAACAAGTCAAGACACACAGATCTATAAAGTGAAACTCGTATTT
CATCATTCTGAAGTATCATAGATCTTTATCGTTTTTTGACGTCAACATTA
AAAAAATCGTTGGAAGTGCTGGATTCCATATATTTTGGGTATTTTGGCTT
GTACAAAAACCTCGGAAGTCAAGACTTAGAGCCACCCACGCATTCAAAAC
AGACAAACAATCAGATCGATAAGAACGGGAAAATACCTAATCACCGAATT
TCATAAACCAAAGTAAGCTTTGTCTTTGTCTTTACTTTTTATACACCACT
GTCTCACAGCTCCAGTGGAGCTTCTTTCCCACAGCGGGGGTATTCCAATG
GGAATAGAAAGTCTATTGTCCCAAGCCTGACATATCCCAGTGGGAATAGT
TTTGGGGTGCAATCTTTTTGCAGTAgatttcaaatggggataaaatctaA
GTCAATCTACcgatggggctgaaattgtagggtatatTTACCACagaatt
ttggtgaaattttccagtggggctgggctcGCAGTGGGTCTTtgacaaag
gtttgtttttatgatTTCACACGAATAACCTACGTAAGCACAATAGTGAA
ATGAAGAGGTCCCATCAAAGCTATCACGAATTCCTTGAAAGGAACGTTTA
TAATAAGGCAGCTCCATTGAAAGTTGGGAGACAAGGGTGGCTTTAGGTAG
GATGAATAAAACCAAATTTGTATCATTCTTCTAGCAAATGCTAACTCAGC
TCCTCAATTTAACAATCAACTACTTAAACATAAAGGGACAGAGTTAGACT
GTCAGTACGAAAACTTACGTCTGTATAtgtaagaaaataaatttaacgAC
TTTTCTGATAAACTCTAGCACAACCTTCTCTAGGGTTGATAGGTGAATTg
taaaaaaaactataaatGAACTAGAAACTATAAATCGAAAACGAAATCCG
CTTTAACTTAATGATGTTCCTCTAAAAGCAGTTTCCGTGAAAAGATGAAA
TAAACATTGTACTGACAGGAAAGTAGTTATTAATGTCAGCCTTTTGATTG
ATGTGCACGTGATTTTTATCGAAATGAAATGATAaagtttcgtcagccat
ctttgtTACGAGGAATGATAAGAGGATAAACTAGttgaaataaagatttt
tggtttttaaatATATAGTATTTTGTTTTTATGGTTATTTGATAGACTGA
CAAAGAAATGAGAAATCGTGCGAAGTCGTGTGTAAAACTGGTGCTTTCTC
TTCGACATAATATTGTTGAGGCCTCTTAGCGGTTTAAACGATTGCGTGAT
TGGAAATTTTCTTGCGTGAAGGCGTGACTTTGACAACTCAGCGTGATGAT
GTGAATCTCAGCGTGTTACGCATGATTAGGCCAAAAACACGGCGCTATGC
GTGATTTCGGCTGTTTTATTAGGCCTTTCTACAGTACTCATTTATCTCTA
ACGAAAAGGTTTTTATAGTTTCTGTATAGGAAGTATAGGGGTCTGCTGCG
GGTCAAAATACTGCTATTTTAGTCGACAAATATACAGTTATGAGAAAATT
TTGGCGATTTTCGTGTTTGTAATAGAGCTAAAAGATGCATATGGCATGAT
AAAATACTCTTTTCATGTTATTGGAAACTCGTCAGGATAGTATTGAAATA
CTGAGAACTCTCTCTAAATCGAATCactattatttgaatcttttcgAAAA
TGCTATAAATGTTTAAACTAGCCCctgcaattcgaatctttctctaattc
gaataagatttttggtcggattagagagagagtcaactgtactgAGATCC
AATCCACGTTTTCTCGTCTAAAAAACTTCATGTCTATTCACAGGTATACT
ACAAGAACACAAAATGAAGACAGGTCTCAACAGCAACTTGGCTGTCAAAA
GTATCGGTCAATCTTTAGCCAAAATGGGGGACGATTTGAACAAGAAGTAT
ACAAGCAATACAAATAATCGAAATACCAAAACAAACAACTCCACTTCAAG
CACTCGAGGAGGATCCCTTAACTCGTCCACTGGCAATAGTACctacttga
ataaaaatagcAGCAAACTTGGCAAGAAAAATACCTCGATGTAATATGAA
CTGGTGTGCAATACAAGCAGAGGATTATGGGATATTGTTCACAATGACCT
GGCACCAGGGTAGAAAGCTATACGAGGGGATACCCTTTTGTAAATAATGG
TGCGCGTCCAGAAAATAATGGTATTTGTATGCGATGAGATTTGGACTTTA
TTGTTGAGTTGGGAGAATAATTCTGGTCTTATCTAATGACATACAAGAAG
TCTAATTCTAATATTATCggtaaaataaaatattgtGAAATCTGTTTTTT
GATCTCAGTCACAGCTTGACTGGAAtcgatgtacacgttttttttgtaag
aacaaactatacataaaaaaacataaggcttcgatggtcaaaatgttaag
aacattgtaagactttgtggactctaaaacactcaatttcttagaaaaat
tgacaaaatactcacaaaatggtaaaaataagaacatgttaaaaacaatt
ttaagcttcaaattctcaaaaagttaagagcatccgaaagcttcaaaaac
ttGTTCTCATAAAGAACGttatcaaaatatattataaaaggAAACAATGC
CCTGAAATTTAATACGAATTTTGCACTTTAACACTGTTTTATTATGACCT
TGTATTTGGATAAATTATTTGATTTCTGGGAGAGCCAACTTTCGTTTTAA
CACACAATGACATGCGATATTGTCGACCTTCATACTTCTCTCTCATCAAG
TAAATAAACTAACTTGTACATAGTGTAATATAATCAGACAATTATTGAGT
AATTTTTTATGATGTTTGTTTGTAAATATGTCTTcgcatgcaaaaaatca
aagaatcgaCAGTCaacattttgcaatttctcATAAGCTTGCAACGAAAT
ATAAGATTACAATACAGCCGTCTAGGAAAATATTATGGGTGTAGCCTTAC
AGTATCATAAAAACTTCTGCCATTTCAAGACAGTAATAACACTGTTTATA
TAAGACCAATTTTACAGGAACAAAGAGAATCTTAGAATGTCGAAATATAA
GGACAACGCTGAGTCTGGTATAACTGCTCAGACTCAACGAGTGCAGCCTA
AAATGCCTCAGTATTGCCCTGAAATACAGGACCTGAGAACAATTTGAGAC
TCAAAGTGAGAACAGTCGATCCTCATccaaaacttcttttaaaaatctta
acATATagtcttacaaaaaaaaattagataaagCAAGTTATTTAGAAATT
CAAACGTAGGCATTCTTCCGTTTCTGAAGCTCGTTAAGCAACGAGAGCCA
CGAGGTCTTATGTTATTTAATAGCTAAATCTCATCCGCCCTTTTTCCCAC
GCCATTTTCGCCACGTTCTTTGTCATGAGAGttggaaagagaaaaaaaac
aaccaaaatgcaCGCAAAAGTTTTATCAGAGGAGTTCCTCTTAATAAGGC
ACAAGTTAGAATTTGAAAACACCCAAGTAAacctttttagtatttttgtc
atCTACATGCTCAAAATATATTGTTAATTCTTATATTtaattattttgta
aatattttgtataGATCATTGCAACCctataattttttattaaataatta
tcaaaaaaaacaataatcagaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004477-exon-sc0000045-1491911889:102992..103253 | TCONS_00004477-exon-sc0000045-1491911889:102992..103253 | Clytia hemisphaerica | exon |
| TCONS_00004477-exon-sc0000045-1510915933:102992..103253 | TCONS_00004477-exon-sc0000045-1510915933:102992..103253 | Clytia hemisphaerica | exon |
| TCONS_00004477-exon-sc0000045-1575043694:102992..103253 | TCONS_00004477-exon-sc0000045-1575043694:102992..103253 | Clytia hemisphaerica | exon |
| TCONS_00004477-exon-sc0000045-1491911889:104835..106666 | TCONS_00004477-exon-sc0000045-1491911889:104835..106666 | Clytia hemisphaerica | exon |
| TCONS_00004477-exon-sc0000045-1510915933:104835..106666 | TCONS_00004477-exon-sc0000045-1510915933:104835..106666 | Clytia hemisphaerica | exon |
| TCONS_00004477-exon-sc0000045-1575043694:104835..106666 | TCONS_00004477-exon-sc0000045-1575043694:104835..106666 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000045 | supercontig | sc0000045:102992..106666 + |
Blast
The following BLAST results are available for this feature:
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