TCONS_00004475 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004475
Unique NameTCONS_00004475
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004475 ID=TCONS_00004475|Name=TCONS_00004475|organism=Clytia hemisphaerica|type=transcript|length=667bp
TCTGTCAAAATTTGGGACCACACATGTCCGGATCCTATTTTCACGTTTGA
TTTGGGAAGTGCCGTGGGCGATGTGGCATGGGCTCCTTATGCTTCTACTG
TTTTCGCAGCCGTTACGGCGGATGGAAAGGTCGTTGTTTACGATTTGAGT
ATCAATAAATATGAACCGGTATGCGATCAATTCAttgtTCAGAAAGGCAA
AACGAAGTTGACTCATGTTTCATTCAATCCGCTTCACCCGATTGTGATTA
TCGGAGATGATAGAGGATATGTGACGTCAGTCAAGCTTTCACCAAATCTA
CGGAAGGCACTTCATCCAAAGGAAAAAGGAAAAGGACCTGAAAATGAGGT
TGCGAAATTTGACAAACTGTTAAGTTTAGTACGCGAACCATCGGAATAGA
TAGATCAATAAAAATTTCTCAATGTAAATAGAATCGAAACTTTTGACAAT
ATGTATgtgtaaatatttcttaaaatcaacatttttaatACATTCTTTAA
TAATACagcttttgattattttctggTTTTAATGCAAGAAGACAAAATAT
ATTGCGAGAgcataattattatttttctctaTTATTTATTGTAAATCTTT
ACATATCAGtcgaactttattttttttttttttgaaatataacaGAAAAT
TATTgtaaacaacaaca
Run BLAST on NCBI

transcript from alignment at sc0000045:65281..77841+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004475 ID=TCONS_00004475|Name=TCONS_00004475|organism=Clytia hemisphaerica|type=transcript|length=12561bp|location=Sequence derived from alignment at sc0000045:65281..77841+ (Clytia hemisphaerica)
TCTGTCAAAATTTGGGACCACACATGTCCGTAAGTTGTCCATACCATGGG
CCCCCTCATCGGCCTCCCCTCACATTTTCGCAGACCATACTTATGTACAT
TAAAACGACTTTATACAGACCAAATCAAATcttaaaaaactgtttttctc
cCTAATTAAAAAacgttttgagggtgtaaaaagtaaaaaaaattcgtcGA
CCTAccatttttccaaaatattggtCCCTCCATTCCAAATGGCTTTCCGG
GGCCCATGTATACATGATATCTACCAAAGTCAATGATGATGCTTGTTTTC
CTTTCACTATTCAATTTGTCACTGgaaaaataatctgaaaatgCTCTGTA
ACTTTTTGAATGAATTCACGTGGAGAAACTTTCAACTTTTCCTCCACGTG
AATTGTTGATGAGACAgggggggcaagcagttagtacagaaCACtatgtg
tactaactgatttttggaaaaatctgtaCCCCACCACCACCCCCTGTCAC
TTAGTACACCGTGTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAAAAGTATAATCATATCTCTCGATgaaactgagga
aaaaagtagTTTTAACCAGTTTCTAACCTAGTTAAAGTGACAATAATGAC
TTTCCAGAAACATTTTTAGACAGAAAACACAGCATGTTTGTTCAGCAACT
TATCCACCATCTTTAGatgattttctatttttcccgaTTATGGATCGGAT
GATCGGATtaccaaaacaaaacagaaaacgttcgaaagttcgaaattttc
aaattcgaatgttttattttgaatatttctaaaagTTCTAAGAGTTCCTA
GAATTGTAATGTCATGTGTCAAGCTGTTAAAAGGTATTCCTGATTGTCCT
AGAAAGAAGATACATAAAAAAGATAGAACCATAAACCTCTCATAAACTGa
taacagtaaaaatctgagaaATCTAGTTTAAAATTCTCGTTTTGAAAAca
gttaatacacctttttacttccaaaattctgtatacaccaccccttttgg
cagttagtacactggtgtactaactgcattttgaaaattttaaaaatgga
cccaccacggtactaagtgTCATGGGTGtcgtgtactaactgcttgcccc
ccccccctggatgaGAGCATTTCACTGTAAACTCACCAAAAATCTCAtgc
tcaattttttgaaaattttcaagcttctttcaatattttttcctttACGA
GGCGTACTTACTGTCGAAATATATTTTATGAAAGTCTCTTATTTTTAATT
CGACAAGTGTATCAAAAGATTTCTCATTATTGTGTTTCTTTCTTATTCAT
CTAGGGATCCTATTTTCACGTTTGATTTGGGAAGTGCCGTGGGCGATGTG
GCATGGGCTCCTTATGCTTCTACTGTTTTCGCAGCCGTTACGGCGGATGG
AAAGGTAAATTTTACCTTCAATAcagtttttgtctttttttacatATATT
CTTGCTAATACACAGGTtgaaaaattaaagtctgaagacaagtTACGTTT
TTACTCGAAAtgtttatgtgcttgttacatgacatttatttctaaTTGGT
TCAAATTTATTGACATTTGTTGACACTAATAAAGATATCAGCTGTAAGTT
ATAAAGCAAGttacatgggaataaaatcacgtgaactttttcgagtaatc
acatgttttgactgcattgatataatttttgcaacccgtgtatttaGTCA
TTCTTTATGGTACCTAGTTATAACCGAGCTgacacaaaacgttgtttcga
cgttcatctaacgttatatggacgttgtgaatattagaaaaacgttgaaa
cgacgttgtgtgcaaGCTGGGAATGGATTAGATtacacttttttcataag
aacacgcAAATTTCGActcttcatcattttttgaataatttttcacattt
tccctaaatttcaggtgttttagagtcggtatagccttaaaatgttctta
acttgttggacctaccccggtggaggtcctataaattaacccgtgttcgt
tagttagttcgttagtACGTTAgctaccaacttttctcgagattggctca
ttcaatttttctgattttttgcacaaaggtgcattactataaaccctgga
atgtgacggagcccgatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNttgagattttctcgagattttatcattagttttttg
cgattttttgcacatagatgcacattagtactgccgaaaaggtgttgaaa
accgtttgccgaaaaactttttttatcggtctgtagaaccggaaatgtgc
cggaaatcgtcgttttttcacatttccatcacatttttcaacttatttaa
ttgtttctttacagaaaaatgttctttatgatgatgcccaaaacttagca
tcgtttgatttccaaaaaaatcatcctttgaaNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNaccggcgtaaaacggttttccttcattttttca
acttatactcgacagattttcatgattttttgcacaatgatgtaaaatgg
caatgcccaaaatgtgacggagctgaGTCTGATTCGTTTAAAACGGAATT
TTCCGGGCggaaataccggaaatatgccggaaatcacagTTTTTGGGTAT
TTCGGTCAGCATTTTAGAAACAGTAATGGTAAAGCTTTTAGAcgtatttt
tatgattttcacaATAAACAAGGGTCAAATCCATGGTAAAAGCCATATTT
CGATACGGAACTGTTCAAAAATTACCGGAAATAGCCGAAAATGCtagttt
attattattttttctaagagaagaaaatgtcacgttacagtgcgacggtt
tgagttttctggaaaccttatttattaagctgtgcatttttctgtcTGAT
AGTggatagtggtttttataaagaaaagcgcttaatagcttttttattta
tttttcaaaaatctttttcaatagtgttgatagtttctctcaatagatat
gctttcattttctttattttttgtattttgaccagttatttcttatgtgt
ttcattgtttcaatgttcactgattagtttgataaccaggtaggttcata
aaagtatcgcttgttcttaacattttgaccacgGAGCCttaaggccggcg
caaatgaatccaacatttgatccaacaataTTGTTGTCGTAAAATTGCAA
CCTTTTAAGAAAGTTGttggaaatcatgttggatgaggTTTGATCGCCGT
CAAACTTTTCACCcaactttttttaatgagattgacgtcacttttatgtt
GGTTTCAATGTAGGATGCATTTGcgtaatcatgttggatgaaaatgtttg
acgtttttgcgcaaatgacttttcatacaatttttcgaatttttccacgt
gacttttcatccaacatttcgtccaacaatgaattggaaatgttggattg
aatgttggattcatttgcgccgACCTTTATGctcttatagtttgttctta
tacagtGTGCCCTgaaaaaaagcggacaaattttttgataaagtaatatc
ctcataatttatgcccaattttatgacttgtataCTTGATATTAATCTCC
AAAACCTATTTAATCATCTGGGGAATTGAATTTTAAGCTaatttaaatta
ttattattgttattattattataagccCAGTTTAGATAATTAGTTTATAg
tattttactttatataaaaatgtgtCCGCTTTTTccgggacacactgtat
aaaaTACATGTCTGTGGCTACTTTAAGTCGTtggaagatgaaaataaaat
ttgaattccaaattttcgtgaaaaaaaattactggtTCACGGGCATTAAA
CCTGATATTttaaaaagagtgtatttttCCTTGTAGGTCGTTGTTTACGA
TTTGAGTATCAATAAATATGAACCGGTATGCGATCAATTCAGTAAGTCAT
TTTCAAACCCTTACTTCTATTCTATTGGAGTGAGTTTCAAAATTATACCA
ATTTGAGACAATTACGCGACTCTGAAACATCTTTAGgaatagttttttat
ttcattttgttcACTATCTATCTCACAGGAAAAAAACTTGATTTGTCACT
TGCCAGATAAAAGTCAGATGTATATGGCTCTTCCAGAAAGTTTTTGTACA
TGGGGAGtagaggatatattggatattttgtccaaGGGGTCATAATTCAC
CGTCCGGGGAGTAAATTTCATAAAGACGCCCCAAATTTGTTCTGAAAAAG
CCATAATTGCTATATCCCTGATATCCCCGACGAGAATATTATGATTGCTG
TCTTCAAAGGCAACCCAAAAACGTGTGTCTTGTCCTGCTACTCACCTCAC
AACTCGAGACCTGAACAAGAGGTCATTGACTTNNNNNNNNNNNNNNNNNN
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NNNNAAGAAAGAAGCGATCAACATCATGAAAGACAGAGAAGCTTGGAGAA
AATTTGTCGTAGCTTCACCCTCTCGCTGAGAGGGATGAagttatgtatgt
atgtatgtatgtatgatatccctttttttcttttttttttagttgtTCAG
AAAGGCAAAACGAAGTTGACTCATGTTTCATTCAATCCGCTTCACCCGAT
TGTGATTATCGGAGATGATAGGTAAACcggttttattattttattgctAG
AAGCTCCCGAGAAATGCAAAAGATTGCGCGATTTTGCCAATGTAGCGAAA
GTTTCTGCCGTTAAATCATTTTTCTCTCGGTGGGTTTTTCTGTTATTTGT
GCGCtctaaagcttttttttttcgagACCTTTTGATATTTAGTACATTTG
TGTTAGCCTGTGTCATAATAACCTACTGTATGGTAAATTTCATTGTTCTC
ACTTCTTTCTTATcatttactttaggcgtacaaactttcacgagcagaaa
ctttcgcgattttcgcgatttttggtcctattcgcgaaagtaaatgtctt
taaaaattctaggaagggccattcgcgaaagtttatgctcgcgaaaaatt
cttgacaaaataaaaaatctgtaaaacttcaNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAATAGAGTTTAGTCCTAgga
ctacctctcactttccatatatgactcttgtctttttctttcgatgtttt
ttcttttgctttatgaTGCCATTGTTTTAAGAATACTGGAATagagcttt
tccaaaaataccttattggtattatatttcgcgtgctacaaaatttcgcg
ggtacttaatttcgcgattttttaggctaaatttcgcaaatttataccgt
ttaaattaaaaaaaaatacaaaatcgcgaaattagatacacgcgaaaaat
tttcaaaataggtcGACAatcgaaaatatttatttgttaCACTTAGTTAC
TATTTTTGTCACTAGTTTTATTACTATTTATGGTATGCTTATACCCAATA
CGTTGGGTTTCAAGCGAAATCAgtcaatttctttctttattcccactttt
tgaaaatgcccaattcagtgaatcgcgaaatttaatacacgcgaaaattt
ccagaaactggcaatcgcgaaatttagtacacgcgaaaaacgttttctgg
aaaaaatttcgcgtttcgcgaaattttgtaacacgcgaacTATAATACCA
ATAAGGAAGTCTGTACTAttccctatgttgaggagatgTGACGTCAAGGA
TGGTCTGGAAGATAAATCCAGGGGGAGGTATAGTTTTTCGAGTGAAGAAA
TAGTAAGTAAAATTAggtggaaaatccagggtggtacATAAAATGGGGTT
GAATATCAATTTACCCATTTAACTCCTGGGAATGTCAACACATTTAAAGT
CCATTCGCTATAATTATGAACTCTTATCCTTAATACCATGCGGAACAAGT
CCAGTCTAGTTCGAATAATTGAGATCCCTTGAGAGCGGTTTCCATATGAT
AggaaaaagagtgcacacttaaagcaaaTGATGTCTTTCCACTTTGTTAT
TATTGTTTCGCAGTCTGATTTGTCGAACTTGAGAACTATTTACTCGAAAA
TAAATTCATTCCTGGCAGAATTACCCCATtcagtttttgtcaattttttt
caatcaaattactGAAATCTTCGATTGCTCCTAATTTAATCCCAAGTTTC
AACGGGTTTCAAGCTTTCCCTCCGTTGACAAAAATCTTTCGAGTTAGTAT
TTTTAACGATTGTTTTAATCCTTGTTAAAAAAAGACTACTTGATGAGTCA
TTTCAGACATAACCGTTTTAGATCCATCTGTTTGCAGTACGGTTAGAAAA
AAACTGCATTTTATATTTTCGatgtacattttttttataagaaccgaTAA
TTTTTGGCTGTAcggattttcgtgattttaagGCATACAGTAAATGTTTT
TCGATATTCTTACTTTGTTCACTTTCATTGACTTGAGAGCTTAAATACAG
CATGAGCTTAGCAATTTCTAAAATCTGAGACTaggactgttcttaatttg
tcgTACTGTTTTTCCCAAACTGTCCTTCATGTTCTTAAATAGATTTGTTT
TTACCAAaactttaacattttttttccaCTTGACAGAGGATATGTGACGT
CAGTCAAGCTTTCACCAAATCTACGGAAGGCACTTCATCCAAAGGTACTA
TTTTTGTAATCAGATGGTTTAAGATATTTAAGAGATGTTAATTCCTTCTA
TGGTCCTGTGagaaacctcaaaatattttcctcttttttcaaaatgttaa
gTTATTCAAGTTAAAGGTTTTTGACTTCAAACAAGAAAACAATCTATTGG
CGTAAGAAATGTGTGGGACcccattttcagaaaattcaatctgtaaatat
ctcgactttgtAAGATAGTTATAAAaagatttagaggttttactcaAAAT
CAAAGAACGTTTCTACAGgccaaaaatctcaaaccatccgattatccctt
taagtttATCTTACTAGTTGCGAATTTAACAGAATAAAGTTACGGCAAAT
GTTTGCATCCATCAGAGTGTAACGTCAGCATTATATGTACATTGTTATTC
CATATCATTCGACCCTTTCAAACTCGAGCCCATTCCTATTGTATACAGCT
TCTGCTTTTTGTTCTGCAATCATCGCTATAacatttggcacaaaagggaa
atttccTCAACATTTTAAATCTGAAAGTGATTTtgaagtgctttaaagta
cagTACGGTTGGAAAGTATGTAGAGTTTAAACTCTGACTTTTAACAAGAG
ACTTGAGATTTAAGGATTTCAGgataaaaaagctcaaaaatattcTAATA
GGGCTTATAATATAGCCttgaagccacttaacccctcccgaatcgaaaaa
tccaatgaaacaaagtggaaaTAATAAAAtcgcccgagctttaaattctg
aataACCCAAATTATCAATCCATTTCGGCGGTAATTGTAGCGCAATGGTT
CATAGGTGTATTACCCTCGAATATTAAGCCTTTCGAACGCAGTCGGAGGG
AACCCGAAGGCTcttctttttaaagctattgacCCGATAGATAGTGCGGG
GGCGATTATCCCTAGATTGATCGACTTAAATCCTTTCTCTTTTATTGCTG
AGTATCACTGATCCGACCGGGGATTTAACCCATAATCTTGCACACTTTAG
CCAAGTGCTTTTAATTTAATACCGGAATACTGGTCAGTACCGGATTCTCG
GAAACTCCTCCCAACTTGCGCATTCTGTTCCTTTTGATTGATTAATGTAT
CGTTTCTGATTCTAGGAAAAAGGAAAAGGACCTGAAAATGAGGTTGCGAA
ATTTGACAAACTGTTAAGTTTAGTACGCGAACCATCGGAATAGATAGATC
AATAAAAATTTCTCAATGTAAATAGAATCGAAACTTTTGACAATATGTAT
gtgtaaatatttcttaaaatcaacatttttaatACATTCTTTAATAATAC
agcttttgattattttctggTTTTAATGCAAGAAGACAAAATATATTGCG
AGAgcataattattatttttctctaTTATTTATTGTAAATCTTTACATAT
CAGtcgaactttattttttttttttttgaaatataacaGAAAATTATTgt
aaacaacaaca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002519XLOC_002519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004475-exon-sc0000045-1491911889:65281..65309TCONS_00004475-exon-sc0000045-1491911889:65281..65309Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1510915933:65281..65309TCONS_00004475-exon-sc0000045-1510915933:65281..65309Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1575043694:65281..65309TCONS_00004475-exon-sc0000045-1575043694:65281..65309Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1491911889:66985..67084TCONS_00004475-exon-sc0000045-1491911889:66985..67084Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1510915933:66985..67084TCONS_00004475-exon-sc0000045-1510915933:66985..67084Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1575043694:66985..67084TCONS_00004475-exon-sc0000045-1575043694:66985..67084Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1491911889:69867..69921TCONS_00004475-exon-sc0000045-1491911889:69867..69921Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1510915933:69867..69921TCONS_00004475-exon-sc0000045-1510915933:69867..69921Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1575043694:69867..69921TCONS_00004475-exon-sc0000045-1575043694:69867..69921Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1491911889:73123..73201TCONS_00004475-exon-sc0000045-1491911889:73123..73201Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1510915933:73123..73201TCONS_00004475-exon-sc0000045-1510915933:73123..73201Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1575043694:73123..73201TCONS_00004475-exon-sc0000045-1575043694:73123..73201Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1491911889:76317..76374TCONS_00004475-exon-sc0000045-1491911889:76317..76374Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1510915933:76317..76374TCONS_00004475-exon-sc0000045-1510915933:76317..76374Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1575043694:76317..76374TCONS_00004475-exon-sc0000045-1575043694:76317..76374Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1491911889:77496..77841TCONS_00004475-exon-sc0000045-1491911889:77496..77841Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1510915933:77496..77841TCONS_00004475-exon-sc0000045-1510915933:77496..77841Clytia hemisphaericaexon
TCONS_00004475-exon-sc0000045-1575043694:77496..77841TCONS_00004475-exon-sc0000045-1575043694:77496..77841Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:65281..77841 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	7.15766	4.52318	2.24407	5.03801	0.45643	1.30583	0	0	0	0	0	0	0.762324	0	0	0	0	0	0	0	0	1.34292
Blast
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BLAST of TCONS_00004475 vs. Swiss-Prot (Human)
Match: DNAI1 (Dynein intermediate chain 1, axonemal OS=Homo sapiens GN=DNAI1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.063e-50
Identity = 86/134 (64.18%), Postives = 105/134 (78.36%), Query Frame = 1 
Query:    1 SVKIWDHTCPDPIFTFDLGSAVGDVAWAPYASTVFAAVTADGKVVVYDLSINKYEPVCDQFIVQKGKTKLTHVSFNPLHPIVIIGDDRGYVTSVKLSPNLRKALHPKEK-----GKGPENEVAKFDKLLSLVRE 387
            +VKIWDHT   P+F +DL SAVGDVAWAPY+STVFAAVT DGK  ++DL+INKYE +C+Q +  K K +LTHV FN +HPI+I+GDDRG++ S+KLSPNLRK   PKEK      KGP  E+AK DKLL+LVRE
Sbjct:  564 TVKIWDHTIKTPMFIYDLNSAVGDVAWAPYSSTVFAAVTTDGKAHIFDLAINKYEAICNQPVAAK-KNRLTHVQFNLIHPIIIVGDDRGHIISLKLSPNLRKM--PKEKKGQEVQKGPAVEIAKLDKLLNLVRE 694
The following BLAST results are available for this feature:
BLAST of TCONS_00004475 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNAI15.063e-5064.18Dynein intermediate chain 1, axonemal OS=Homo sapi... [more]
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