TCONS_00004471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004471
Unique NameTCONS_00004471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length589

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004471 ID=TCONS_00004471|Name=TCONS_00004471|organism=Clytia hemisphaerica|type=transcript|length=589bp
GGGAAACCGAGGTCTAAATGCCCTTGTTTCAAGGCATCCAAAAGTTGTAA
TGGATGCAATTGCAAGAACTGTACCAATCCAAATGGTACAAATGAACCCC
GAACGACTTCTGCAAAACGAAGTGGTTGTCGATGTAGTACAGGATGTGAA
AACACTGATGGcagaaaatcaaaatgtcccTGCCTAAAGTCACGTCAAAG
TTGCGTTGATTGTAGCTGCAAAAACTGCAACAACCCCAATGGAAAAAATG
AACCGGTTAAGGCTAAAAGAAATACCCCTTCGGTCAGGACAACGAACCAA
TACACCACCTACTCAAAGAAAAGAACCGAAGACTATCTCCAAGATTCATC
CCACGATACCCCTTCCAATGCTTCGTTGGGAACAGGTTTCTGGACATTGG
ACGAAACAGTGACAGTCTATGTTTGTGCTGAACTTTCATTTGTTTTACAT
TCGACGTACAACTTAAATGACATTGAAATGTTGTATGGGTTACTTTTTGA
AGACATTAAGATTCGCGAAGATCTTTCGTTGAGAACAAAGTCTTTGAAGC
AAATCAAAAGCAAGCTTAAAACAATGGGATATTTCAAAG
Run BLAST on NCBI

protein sequence of TCONS_00004471-protein

>TCONS_00004471-protein ID=TCONS_00004471-protein|Name=TCONS_00004471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
GKPRSKCPCFKASKSCNGCNCKNCTNPNGTNEPRTTSAKRSGCRCSTGCE
NTDGRKSKCPCLKSRQSCVDCSCKNCNNPNGKNEPVKAKRNTPSVRTTNQ
YTTYSKKRTEDYLQDSSHDTPSNASLGTGFWTLDETVTVYVCAELSFVLH
STYNLNDIEMLYGLLFEDIKIREDLSLRTKSLKQIKSKLKTMGYFK
Run BLAST on NCBI

transcript from alignment at sc0000044:799943..800531

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004471 ID=TCONS_00004471|Name=TCONS_00004471|organism=Clytia hemisphaerica|type=transcript|length=589bp|location=Sequence derived from alignment at sc0000044:799943..800531 (Clytia hemisphaerica)
CTTTGAAATATCCCATTGTTTTAAGCTTGCTTTTGATTTGCTTCAAAGAC
TTTGTTCTCAACGAAAGATCTTCGCGAATCTTAATGTCTTCAAAAAGTAA
CCCATACAACATTTCAATGTCATTTAAGTTGTACGTCGAATGTAAAACAA
ATGAAAGTTCAGCACAAACATAGACTGTCACTGTTTCGTCCAATGTCCAG
AAACCTGTTCCCAACGAAGCATTGGAAGGGGTATCGTGGGATGAATCTTG
GAGATAGTCTTCGGTTCTTTTCTTTGAGTAGGTGGTGTATTGGTTCGTTG
TCCTGACCGAAGGGGTATTTCTTTTAGCCTTAACCGGTTCATTTTTTCCA
TTGGGGTTGTTGCAGTTTTTGCAGCTACAATCAACGCAACTTTGACGTGA
CTTTAGGCAgggacattttgattttctgCCATCAGTGTTTTCACATCCTG
TACTACATCGACAACCACTTCGTTTTGCAGAAGTCGTTCGGGGTTCATTT
GTACCATTTGGATTGGTACAGTTCTTGCAATTGCATCCATTACAACTTTT
GGATGCCTTGAAACAAGGGCATTTAGACCTCGGTTTCCC

Coding sequence (CDS) from alignment at sc0000044:799943..800531

>TCONS_00004471 ID=TCONS_00004471|Name=TCONS_00004471|organism=Clytia hemisphaerica|type=CDS|length=588bp|location=Sequence derived from alignment at sc0000044:799943..800531 (Clytia hemisphaerica)
TTTGAAATATCCCATTGTTTTAAGCTTGCTTTTGATTTGCTTCAAAGACT
TTGTTCTCAACGAAAGATCTTCGCGAATCTTAATGTCTTCAAAAAGTAAC
CCATACAACATTTCAATGTCATTTAAGTTGTACGTCGAATGTAAAACAAA
TGAAAGTTCAGCACAAACATAGACTGTCACTGTTTCGTCCAATGTCCAGA
AACCTGTTCCCAACGAAGCATTGGAAGGGGTATCGTGGGATGAATCTTGG
AGATAGTCTTCGGTTCTTTTCTTTGAGTAGGTGGTGTATTGGTTCGTTGT
CCTGACCGAAGGGGTATTTCTTTTAGCCTTAACCGGTTCATTTTTTCCAT
TGGGGTTGTTGCAGTTTTTGCAGCTACAATCAACGCAACTTTGACGTGAC
TTTAGGCAgggacattttgattttctgCCATCAGTGTTTTCACATCCTGT
ACTACATCGACAACCACTTCGTTTTGCAGAAGTCGTTCGGGGTTCATTTG
TACCATTTGGATTGGTACAGTTCTTGCAATTGCATCCATTACAACTTTTG
GATGCCTTGAAACAAGGGCATTTAGACCTCGGTTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002518XLOC_002518Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004471-exon-sc0000044-1491911889:799943..800531TCONS_00004471-exon-sc0000044-1491911889:799943..800531Clytia hemisphaericaexon
TCONS_00004471-exon-sc0000044-1510915933:799943..800531TCONS_00004471-exon-sc0000044-1510915933:799943..800531Clytia hemisphaericaexon
TCONS_00004471-exon-sc0000044-1575043694:799943..800531TCONS_00004471-exon-sc0000044-1575043694:799943..800531Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004471-proteinTCONS_00004471-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:799943..800531 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.881332	0	0.120032	0	0	0	0.0945887	0.186537	0.24837	0	0	0	0	0.143674	0	0	0	0	0	0	1.60383	1.34192	0	0	0	0.105578
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005172CRC
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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