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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004470 ID=TCONS_00004470|Name=TCONS_00004470|organism=Clytia hemisphaerica|type=transcript|length=2105bp
NNTTGTTTCCTATTAGGGTAGAGACAATGGACAAGTCATTTTGAGCATAC
AATTGAAAGACTGTATCGATTGAAGAGTAGGATCTTTGAGCGCTATCCAG
GGTTGCTAGGTGTAGAAGATATTTTCGTAACATGTTGCATTTGAGTAGTT
GATGTGGTAGTAGCATTGCACGTTTCTTGATTAACGATGAAGTGTCTGGT
ATTTTGTAGATCTGACTGATAAGATTTCGACTGTGCTTGGAGACTCCCAT
AAGTGCTTTGAGGCTTGACCTAGCTTGGGCTTCTAGTTGTGCGATGTCGG
AGTTGGACAGTTTAACAAATTCTAATCCGTAGAGCAGCTTTGGTATAACA
ACGGTGTTGAAGACATGTACAATGGTGTTTGGGTGAGTGTTTCTGATTCC
TGCTGAGATCAAGGAGGAAGTAACGGCCCAAAGTTCAGATAAACGTACAT
CTTTGTGATGGTTAAGTTTCTTTCGGTTTTCCATCTAAGACCCAAGTGTT
CGAGTTGTTGTTTCGGAAGGATTTGTGTGTTGTACATAGTTAAGGTGGGT
TTAGGTAGTTGACACTTTCCCGAAATGCAGAATTGTGTTTTCGAATGGTT
GAATTTGAGCCCATGTTCCTGGCCGTACTCAATGCATTTGTCTATCATAA
CTTGAAGGGATCTTAGCGTTGGGCTGAGCAGAATTAGGTCATCAGCATAT
GCAATTATTGAAGTATTCAGTCCATTTCCCAAGGTTGCTccaatttttaa
atctttgatcTTTGCAAGCAGATCTTCTGTGTAAAAGTTATACAGGTAGG
GGGAGAGTAGTGAGCCCTGCCTAACTCCTTGACTgagattgaaagatttt
gttttatGACCGTTGTACATGATTGCTGATTCACTGTTCAAGTAgagttt
tatcaaaaatttgaggATTTCATTTGGGATGTCTTCTCTGACTgataact
tttcaaataacACCTGCCAATTGCAACAGTCAAAAGCTTTCTCTGCATCA
AGACTACAAACGTACACAGGAGAATCATTCTTATTGTAATAATGGATCGT
ATCTTGGATGAGGATTTCTGCGTGGATTGTTGAAGACCCGTTAACGAAGC
CGAACTGAGATGGATTATTGTTCTTTATGTTTGGACATTTCTTTATTATG
ACTAGTTCAGCAATCTTAGTTATAATTGGGATGATGCTAATGCCACGGTA
GTTGTTGGGATCTGAAAGAGgttttttgtggtttttcaCAAGAGGGATGA
TTAGGGATGTACACAGCGCCGATGGAATTGTGGAAGTTTGAAAGAGTTTA
TTGATTAATTCTGTAATATGTTGGATAAACACGTCATTTGAAGCATGGAT
GTAGTGTTCAGCTCTAAGATTGAAAGGATCCcgagttttattttttgata
gaGAAAGTATAGCTTGTTTAACGTCACATTCCGAGATGTAAAAGTCAGTG
GAAGTAGATCTTTCTAAGGTAGTTAGTAGTTCCTGGAGTCTGGTTCTCGA
TTTTGTGTTATCGATATTTTGAGTTCGTGGTGTgttcaaaagattttcaa
agtgattGTGGAATTCTGTTGTGATTTCTGAGCTTGTGGTCTTTCCGTTG
ATAGTGAATAGTTTTTGTGTTGAAGCTTTATTTACTTTGATGCTCTTCCA
GTAAGATCTTGGATccaggtttttaagattgtcTACATTTATGAAATGGT
CAACGTTGGCTTGATTTTTTGCGCGCTTTACCATATTCCGAAATCTTTTT
CTGGCGAAGATGTATCTCTGGTATGTCACATTGTCCTGCGAGCGGGGGAA
TCCTTGATCTCTCCATGGATTGAACATTTGATTCAATTTGTTTTTTGCCT
CGGCAAGGTCTTTGTTCCACCATTTCTTTGGTTGGAAATGAAACTTATTG
TTTTTCAGGTTGGCATAGCTGTCAGAGGAGCACACTGTAAGAGGAGTTCA
TTTAAGTTTGTTAAGTCTGTTTCAACGTCATTTGTAGCTTCTAGTTGTTG
AATAGCGGTGGTAACTTTATTTTGGTATATAGAAATGAAGTGATTATTGT
GCCATATATAATTGGGTAGTTGAAATTGTTGGTTTGATTCGTTTGGGTTT
GTTGA Run BLAST on NCBI protein sequence of TCONS_00004470-protein >TCONS_00004470-protein ID=TCONS_00004470-protein|Name=TCONS_00004470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=472bp
MFNPWRDQGFPRSQDNVTYQRYIFARKRFRNMVKRAKNQANVDHFINVDN
LKNLDPRSYWKSIKVNKASTQKLFTINGKTTSSEITTEFHNHFENLLNTP
RTQNIDNTKSRTRLQELLTTLERSTSTDFYISECDVKQAILSLSKNKTRD
PFNLRAEHYIHASNDVFIQHITELINKLFQTSTIPSALCTSLIIPLVKNH
KKPLSDPNNYRGISIIPIITKIAELVIIKKCPNIKNNNPSQFGFVNGSST
IHAEILIQDTIHYYNKNDSPVYVCSLDAEKAFDCCNWQVLFEKLSVREDI
PNEILKFLIKLYLNSESAIMYNGHKTKSFNLSQGVRQGSLLSPYLYNFYT
EDLLAKIKDLKIGATLGNGLNTSIIAYADDLILLSPTLRSLQVMIDKCIE
YGQEHGLKFNHSKTQFCISGKCQLPKPTLTMYNTQILPKQQLEHLGLRWK
TERNLTITKMYVYLNFGPLLPP Run BLAST on NCBI transcript from alignment at sc0000044:763904..766008 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004470 ID=TCONS_00004470|Name=TCONS_00004470|organism=Clytia hemisphaerica|type=transcript|length=2105bp|location=Sequence derived from alignment at sc0000044:763904..766008 (Clytia hemisphaerica)
TCAACAAACCCAAACGAATCAAACCAACAATTTCAACTACCCAATTATAT
ATGGCACAATAATCACTTCATTTCTATATACCAAAATAAAGTTACCACCG
CTATTCAACAACTAGAAGCTACAAATGACGTTGAAACAGACTTAACAAAC
TTAAATGAACTCCTCTTACAGTGTGCTCCTCTGACAGCTATGCCAACCTG
AAAAACAATAAGTTTCATTTCCAACCAAAGAAATGGTGGAACAAAGACCT
TGCCGAGGCAAAAAACAAATTGAATCAAATGTTCAATCCATGGAGAGATC
AAGGATTCCCCCGCTCGCAGGACAATGTGACATACCAGAGATACATCTTC
GCCAGAAAAAGATTTCGGAATATGGTAAAGCGCGCAAAAAATCAAGCCAA
CGTTGACCATTTCATAAATGTAgacaatcttaaaaacctggATCCAAGAT
CTTACTGGAAGAGCATCAAAGTAAATAAAGCTTCAACACAAAAACTATTC
ACTATCAACGGAAAGACCACAAGCTCAGAAATCACAACAGAATTCCACaa
tcactttgaaaatcttttgaacACACCACGAACTCAAAATATCGATAACA
CAAAATCGAGAACCAGACTCCAGGAACTACTAACTACCTTAGAAAGATCT
ACTTCCACTGACTTTTACATCTCGGAATGTGACGTTAAACAAGCTATACT
TTCtctatcaaaaaataaaactcgGGATCCTTTCAATCTTAGAGCTGAAC
ACTACATCCATGCTTCAAATGACGTGTTTATCCAACATATTACAGAATTA
ATCAATAAACTCTTTCAAACTTCCACAATTCCATCGGCGCTGTGTACATC
CCTAATCATCCCTCTTGtgaaaaaccacaaaaaacCTCTTTCAGATCCCA
ACAACTACCGTGGCATTAGCATCATCCCAATTATAACTAAGATTGCTGAA
CTAGTCATAATAAAGAAATGTCCAAACATAAAGAACAATAATCCATCTCA
GTTCGGCTTCGTTAACGGGTCTTCAACAATCCACGCAGAAATCCTCATCC
AAGATACGATCCATTATTACAATAAGAATGATTCTCCTGTGTACGTTTGT
AGTCTTGATGCAGAGAAAGCTTTTGACTGTTGCAATTGGCAGGTgttatt
tgaaaagttatcAGTCAGAGAAGACATCCCAAATGAAATcctcaaatttt
tgataaaactcTACTTGAACAGTGAATCAGCAATCATGTACAACGGTCat
aaaacaaaatctttcaatctcAGTCAAGGAGTTAGGCAGGGCTCACTACT
CTCCCCCTACCTGTATAACTTTTACACAGAAGATCTGCTTGCAAAgatca
aagatttaaaaattggAGCAACCTTGGGAAATGGACTGAATACTTCAATA
ATTGCATATGCTGATGACCTAATTCTGCTCAGCCCAACGCTAAGATCCCT
TCAAGTTATGATAGACAAATGCATTGAGTACGGCCAGGAACATGGGCTCA
AATTCAACCATTCGAAAACACAATTCTGCATTTCGGGAAAGTGTCAACTA
CCTAAACCCACCTTAACTATGTACAACACACAAATCCTTCCGAAACAACA
ACTCGAACACTTGGGTCTTAGATGGAAAACCGAAAGAAACTTAACCATCA
CAAAGATGTACGTTTATCTGAACTTTGGGCCGTTACTTCCTCCTTGATCT
CAGCAGGAATCAGAAACACTCACCCAAACACCATTGTACATGTCTTCAAC
ACCGTTGTTATACCAAAGCTGCTCTACGGATTAGAATTTGTTAAACTGTC
CAACTCCGACATCGCACAACTAGAAGCCCAAGCTAGGTCAAGCCTCAAAG
CACTTATGGGAGTCTCCAAGCACAGTCGAAATCTTATCAGTCAGATCTAC
AAAATACCAGACACTTCATCGTTAATCAAGAAACGTGCAATGCTACTACC
ACATCAACTACTCAAATGCAACATGTTACGAAAATATCTTCTACACCTAG
CAACCCTGGATAGCGCTCAAAGATCCTACTCTTCAATCGATACAGTCTTT
CAATTGTATGCTCAAAATGACTTGTCCATTGTCTCTACCCTAATAGGAAA
CAANN Coding sequence (CDS) from alignment at sc0000044:763904..766008 >TCONS_00004470 ID=TCONS_00004470|Name=TCONS_00004470|organism=Clytia hemisphaerica|type=CDS|length=1419bp|location=Sequence derived from alignment at sc0000044:763904..766008 (Clytia hemisphaerica)
ATGTTCAATCCATGGAGAGATCAAGGATTCCCCCGCTCGCAGGACAATGT
GACATACCAGAGATACATCTTCGCCAGAAAAAGATTTCGGAATATGGTAA
AGCGCGCAAAAAATCAAGCCAACGTTGACCATTTCATAAATGTAgacaat
cttaaaaacctggATCCAAGATCTTACTGGAAGAGCATCAAAGTAAATAA
AGCTTCAACACAAAAACTATTCACTATCAACGGAAAGACCACAAGCTCAG
AAATCACAACAGAATTCCACaatcactttgaaaatcttttgaacACACCA
CGAACTCAAAATATCGATAACACAAAATCGAGAACCAGACTCCAGGAACT
ACTAACTACCTTAGAAAGATCTACTTCCACTGACTTTTACATCTCGGAAT
GTGACGTTAAACAAGCTATACTTTCtctatcaaaaaataaaactcgGGAT
CCTTTCAATCTTAGAGCTGAACACTACATCCATGCTTCAAATGACGTGTT
TATCCAACATATTACAGAATTAATCAATAAACTCTTTCAAACTTCCACAA
TTCCATCGGCGCTGTGTACATCCCTAATCATCCCTCTTGtgaaaaaccac
aaaaaacCTCTTTCAGATCCCAACAACTACCGTGGCATTAGCATCATCCC
AATTATAACTAAGATTGCTGAACTAGTCATAATAAAGAAATGTCCAAACA
TAAAGAACAATAATCCATCTCAGTTCGGCTTCGTTAACGGGTCTTCAACA
ATCCACGCAGAAATCCTCATCCAAGATACGATCCATTATTACAATAAGAA
TGATTCTCCTGTGTACGTTTGTAGTCTTGATGCAGAGAAAGCTTTTGACT
GTTGCAATTGGCAGGTgttatttgaaaagttatcAGTCAGAGAAGACATC
CCAAATGAAATcctcaaatttttgataaaactcTACTTGAACAGTGAATC
AGCAATCATGTACAACGGTCataaaacaaaatctttcaatctcAGTCAAG
GAGTTAGGCAGGGCTCACTACTCTCCCCCTACCTGTATAACTTTTACACA
GAAGATCTGCTTGCAAAgatcaaagatttaaaaattggAGCAACCTTGGG
AAATGGACTGAATACTTCAATAATTGCATATGCTGATGACCTAATTCTGC
TCAGCCCAACGCTAAGATCCCTTCAAGTTATGATAGACAAATGCATTGAG
TACGGCCAGGAACATGGGCTCAAATTCAACCATTCGAAAACACAATTCTG
CATTTCGGGAAAGTGTCAACTACCTAAACCCACCTTAACTATGTACAACA
CACAAATCCTTCCGAAACAACAACTCGAACACTTGGGTCTTAGATGGAAA
ACCGAAAGAAACTTAACCATCACAAAGATGTACGTTTATCTGAACTTTGG
GCCGTTACTTCCTCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004470-exon-sc0000044-1491911889:763904..766008 | TCONS_00004470-exon-sc0000044-1491911889:763904..766008 | Clytia hemisphaerica | exon |
| TCONS_00004470-exon-sc0000044-1510915933:763904..766008 | TCONS_00004470-exon-sc0000044-1510915933:763904..766008 | Clytia hemisphaerica | exon |
| TCONS_00004470-exon-sc0000044-1575043694:763904..766008 | TCONS_00004470-exon-sc0000044-1575043694:763904..766008 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000044 | supercontig | sc0000044:763904..766008 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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