TCONS_00004466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004466
Unique NameTCONS_00004466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004466 ID=TCONS_00004466|Name=TCONS_00004466|organism=Clytia hemisphaerica|type=transcript|length=359bp
tagaacttttgcaaaaaaaaggaaaaatagaaaagttgtattttttactg
ctctattgattgattgattgttgagAATTTCGTTTACCTTGGTGCCCACA
TTCGCTGTGATCAACCTAACACAGGAGATCCTGAAATAAATAGCCGGATT
CAATTGGCAGTCAGTAAATTCACTGACATGAGCAATCTTCTTCAGAACAT
GAGAATCAATTTAAGAACAAGAGTCAAATTTCTGGAAAGTTTTGTTCGTA
GTACGCTGACCTATGCTTGCCAAAACTGGAATGTCAACAAAGCCCAAATG
GAACGCCTTGATGTAACCTACCGTGGTTTCCTCAGACGTATCGTTCGAGG
AGGTTTTTG
Run BLAST on NCBI

transcript from alignment at sc0000044:583854..584212

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004466 ID=TCONS_00004466|Name=TCONS_00004466|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at sc0000044:583854..584212 (Clytia hemisphaerica)
CAAAAACCTCCTCGAACGATACGTCTGAGGAAACCACGGTAGGTTACATC
AAGGCGTTCCATTTGGGCTTTGTTGACATTCCAGTTTTGGCAAGCATAGG
TCAGCGTACTACGAACAAAACTTTCCAGAAATTTGACTCTTGTTCTTAAA
TTGATTCTCATGTTCTGAAGAAGATTGCTCATGTCAGTGAATTTACTGAC
TGCCAATTGAATCCGGCTATTTATTTCAGGATCTCCTGTGTTAGGTTGAT
CACAGCGAATGTGGGCACCAAGGTAAACGAAATTctcaacaatcaatcaa
tcaatagagcagtaaaaaatacaacttttctatttttccttttttttgca
aaagttcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002513XLOC_002513Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004466-exon-sc0000044-1491911889:583854..584212TCONS_00004466-exon-sc0000044-1491911889:583854..584212Clytia hemisphaericaexon
TCONS_00004466-exon-sc0000044-1510915933:583854..584212TCONS_00004466-exon-sc0000044-1510915933:583854..584212Clytia hemisphaericaexon
TCONS_00004466-exon-sc0000044-1575043694:583854..584212TCONS_00004466-exon-sc0000044-1575043694:583854..584212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:583854..584212 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.728171	1.30213	2.10488	2.42291	2.37902	1.81437	0	1.26785	0.653769	1.3192	0.42415	0.331205	0.507897	1.3017	0.837416	0.293814	0.64389	0.514557	0.486926	1.63077	1.10434	2.72807	0.650368	1.25051	1.05692	0	3.52714	1.51078	0	0.813618
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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