TCONS_00004439 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004439
Unique NameTCONS_00004439
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004439 ID=TCONS_00004439|Name=TCONS_00004439|organism=Clytia hemisphaerica|type=transcript|length=222bp
ATTTTACATACAGTACATAAAAAATAAGAATCatcaaaaaatagatttca
attTGTTTACCTAGACAATTATCAGAAGTATGAACTAAATATTACCAAAA
AATATGACGAAAAAATGTACGAACGCGCGACATTAGAAAACATAGCCTGG
ATGTCCAGACTTTTCTATTTTCGATGTTTCTGGTTTACagatacgacatc
ggcacttaaagggttaaacaag
Run BLAST on NCBI

transcript from alignment at sc0000044:101993..102214

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004439 ID=TCONS_00004439|Name=TCONS_00004439|organism=Clytia hemisphaerica|type=transcript|length=222bp|location=Sequence derived from alignment at sc0000044:101993..102214 (Clytia hemisphaerica)
cttgtttaaccctttaagtgccgatgtcgtatctGTAAACCAGAAACATC
GAAAATAGAAAAGTCTGGACATCCAGGCTATGTTTTCTAATGTCGCGCGT
TCGTACATTTTTTCGTCATATTTTTTGGTAATATTTAGTTCATACTTCTG
ATAATTGTCTAGGTAAACAaattgaaatctattttttgatGATTCTTATT
TTTTATGTACTGTATGTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002486XLOC_002486Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004439-exon-sc0000044-1491911889:101993..102214TCONS_00004439-exon-sc0000044-1491911889:101993..102214Clytia hemisphaericaexon
TCONS_00004439-exon-sc0000044-1510915933:101993..102214TCONS_00004439-exon-sc0000044-1510915933:101993..102214Clytia hemisphaericaexon
TCONS_00004439-exon-sc0000044-1575043694:101993..102214TCONS_00004439-exon-sc0000044-1575043694:101993..102214Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:101993..102214 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.986	11.6928	23.08	31.8778	11.3191	5.11113	7.70795	15.8754	24.2503	22.5285	6.07408	6.38857	7.17715	9.93806	5.44696	8.76813	4.50067	9.22609	8.92244	4.00144	5.79663	6.78574	13.7483	3.74975	0	5.7448	8.22079	12.2828	10.647	2.71189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004439 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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