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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004429 ID=TCONS_00004429|Name=TCONS_00004429|organism=Clytia hemisphaerica|type=transcript|length=457bp
AAAACGTACACATATAGGATTCATTTTTCTTGGAAGTATCTTACTATTGT
TGTCAAGCCGAGTCATTACGTCTGACGTTTTCGCGTCTACGGAGAGCATA
AAGGAAATGTTACGAGCGGAAAAGGAACTTATCGAACCACTTGATGATTG
TATCGAGAAAGAAACTGAGCGTTTACGAGAAATAAAAGAGCTACGAGaca
aaatcaaagatgaaattGAATGGGTGAAGGAATCCTCTTCACTTGATTGT
TACGTGGGGAATCCTTTGAATGCAATGTATGCGATACGAAGATTCCCAAA
CGTTTGGTCCAAAATTCATAAACTGATCAACAACACAAATCATTGCACAG
GATTTGGAAGAGTTTACAAAAGTCATCGTGCGAAATTTCCGGACATCAAC
GATGCAAATGCTGCTGTCAGCGCTATTTTGCGGCTACAACATTATTACAA
AATCAAT Run BLAST on NCBI protein sequence of TCONS_00004429-protein >TCONS_00004429-protein ID=TCONS_00004429-protein|Name=TCONS_00004429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=152bp
KRTHIGFIFLGSILLLLSSRVITSDVFASTESIKEMLRAEKELIEPLDDC
IEKETERLREIKELRDKIKDEIEWVKESSSLDCYVGNPLNAMYAIRRFPN
VWSKIHKLINNTNHCTGFGRVYKSHRAKFPDINDANAAVSAILRLQHYYK
IN Run BLAST on NCBI transcript from alignment at sc0000044:726669..727791- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004429 ID=TCONS_00004429|Name=TCONS_00004429|organism=Clytia hemisphaerica|type=transcript|length=1123bp|location=Sequence derived from alignment at sc0000044:726669..727791- (Clytia hemisphaerica)
AAAACGTACACATATAGGATTCATTTTTCTTGGAAGTATCTTACTATTGT
TGTCAAGCCGAGTCATTACGTCTGACGTTTTCGCGTCTACGGAGAGCATA
AAGGAAATGTTACGAGCGGAAAAGGAACTTATCGAACCACTTGATGATTG
TATCGAGAAAGAAACTGAGCGTTTACGAGAAATAAAAGAGCTACGAGACA
AAATCAAAGATGAAATTGAATGGGTGAAGGAATCCTCTTCACTTGATTGT
TACGTGGGGAATCCTTTGAATGCAATGTATGCGATACGAAGATTCCCAAA
CGTTTGGTCCAAAATTCATAAACTGATCAACAACACAAATCATTGCACAG
GTTAATTATTGGGCTTTTCCAGAAAAAAACCGTATACCCCCTGTTGAGGA
GGTCCATTTCCGTTCCAAGGGGGTAAGGTTTGATATGTGGCGGAATTCGA
TAGGGAGATAGAAAAATCTGTCAAAAATAACTGGAATTCCACGGGGGTAG
CCTTTTAAATACTACTAAAATTCAGAATTCCAGAGGGGTTTAAACCTGAA
ATTGCCTGGAATTCCAGGGGGTTACAGCATTTCCAGCCACAAAATGATAG
ACCTCCTCAACAGGGGATATACGTTTTTTTTGTGGAAAAGCCCATTTCGA
TTGCTCACAAAAGCAGATTTTGGACGTCCCGGGTACGAATTTAAAATTTG
TGATTTAAGATGCTTTTATCTATAACATAGTGTGCTGGATTCTCGAAGAT
TTTTCAAATAATTCAAAATTACTTAGTATGGAGAAAATTCCTGCTTTGAG
AAATTTCCAGAGGTCCCACCTAATCCTACTCCCCCAACTCAAAGTCTAGG
ATTTCAAGGTTCCACCTGGTCAATTTAGGTCCAAAAATTCAAAACCTCCC
CCTGCAGAGTAAGGGAAGAGCAGAGGTGCACACTATGCTATATCAAGAGA
TATTTTAGACTGATAGAGAATATGTCAGAAACGAAACTCCCACAATAACA
CTATTTACCTCTTCAGGATTTGGAAGAGTTTACAAAAGTCATCGTGCGAA
ATTTCCGGACATCAACGATGCAAATGCTGCTGTCAGCGCTATTTTGCGGC
TACAACATTATTACAAAATCAAT Coding sequence (CDS) from alignment at sc0000044:726669..727791- >TCONS_00004429 ID=TCONS_00004429|Name=TCONS_00004429|organism=Clytia hemisphaerica|type=CDS|length=912bp|location=Sequence derived from alignment at sc0000044:726669..727791- (Clytia hemisphaerica)
GATTTGGAAGAGTTTACAAAAGTCATCGTGCGAAATTTCCGGACATCAAC
GATGCAAATGCTGCTGTCAGCGCTATTTTGCGGCTACAACATTATTACAA
AATCAATAAACGTACACATATAGGATTCATTTTTCTTGGAAGTATCTTAC
TATTGTTGTCAAGCCGAGTCATTACGTCTGACGTTTTCGCGTCTACGGAG
AGCATAAAGGAAATGTTACGAGCGGAAAAGGAACTTATCGAACCACTTGA
TGATTGTATCGAGAAAGAAACTGAGCGTTTACGAGAAATAAAAGAGCTAC
GAGACAAAATCAAAGATGAAATTGAATGGGTGAAGGAATCCTCTTCACTT
GATTGTTACGTGGGGAATCCTTTGAATGCAATGTATGCGATACGAAGATT
CCCAAACGTTTGGTCCAAAATTCATAAACTGATCAACAACACAAATCATT
GCACAGGATTTGGAAGAGTTTACAAAAGTCATCGTGCGAAATTTCCGGAC
ATCAACGATGCAAATGCTGCTGTCAGCGCTATTTTGCGGCTACAACATTA
TTACAAAATCAATAAACGTACACATATAGGATTCATTTTTCTTGGAAGTA
TCTTACTATTGTTGTCAAGCCGAGTCATTACGTCTGACGTTTTCGCGTCT
ACGGAGAGCATAAAGGAAATGTTACGAGCGGAAAAGGAACTTATCGAACC
ACTTGATGATTGTATCGAGAAAGAAACTGAGCGTTTACGAGAAATAAAAG
AGCTACGAGACAAAATCAAAGATGAAATTGAATGGGTGAAGGAATCCTCT
TCACTTGATTGTTACGTGGGGAATCCTTTGAATGCAATGTATGCGATACG
AAGATTCCCAAACGTTTGGTCCAAAATTCATAAACTGATCAACAACACAA
ATCATTGCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004429-exon-sc0000044-1575043694:727442..727791 | TCONS_00004429-exon-sc0000044-1575043694:727442..727791 | Clytia hemisphaerica | exon |
| TCONS_00004429-exon-sc0000044-1575043694:726669..726775 | TCONS_00004429-exon-sc0000044-1575043694:726669..726775 | Clytia hemisphaerica | exon |
| TCONS_00004429-exon-sc0000044-1510915933:727442..727791 | TCONS_00004429-exon-sc0000044-1510915933:727442..727791 | Clytia hemisphaerica | exon |
| TCONS_00004429-exon-sc0000044-1510915933:726669..726775 | TCONS_00004429-exon-sc0000044-1510915933:726669..726775 | Clytia hemisphaerica | exon |
| TCONS_00004429-exon-sc0000044-1491911889:727442..727791 | TCONS_00004429-exon-sc0000044-1491911889:727442..727791 | Clytia hemisphaerica | exon |
| TCONS_00004429-exon-sc0000044-1491911889:726669..726775 | TCONS_00004429-exon-sc0000044-1491911889:726669..726775 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:726669..727791 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013547 | Pro_4_hyd_alph_N |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004656 | procollagen-proline 4-dioxygenase activity |
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005783 | endoplasmic reticulum |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| cellular_component |
GO:0005783 |
endoplasmic reticulum |
| molecular_function |
GO:0016702 |
oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| molecular_function |
GO:0004656 |
procollagen-proline 4-dioxygenase activity |
Blast
The following BLAST results are available for this feature:
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