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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004378 ID=TCONS_00004378|Name=TCONS_00004378|organism=Clytia hemisphaerica|type=transcript|length=1178bp
CTATAAATTTGATTAGCGAGGCGGGGATATTGCCAAAGCAAAGatgGATC
AAAAAGTAGAAATCATCGATGTTACCAAAGTGAATGAGAGAGTAAAAGCT
GCTGTAGAGCATACTTCTCAATGGTCAGGGAAGGCTCAACCTTATGCCGA
AGACCTTGTGGAACATTATGATGCAGAAGCAGAAGGCTATGAAGAGATGT
ATTTAACAATGGGTTACCATGACCACGAGAAAGTAAACGAGATTGCATGT
GAACTTATCGGAGACCAGGCAACTAGAGGAGAAATTGAAGTTCTCGACAT
GGGTTGTGGAACCGGACTTGTTGGAGATCAACTCTTCAAGAATGGTGGCT
TCAAGAACATCGTCGGTGTTGATGCATCAGTTGGTATGATGGCAAAGGCA
AAAGCTAAGGGATCGTATAAGGATACAATCAAGCTGTTGCTTGGAAAGCC
TGAGACTTTCCCGGAAATTCTTAAAAACAGGTTTGGACTTGTTGTCTGCT
GTGCAGTTTTGGCTGAAGGTCATTGCGACAAGAAACTCTTTGATGAGATG
GTGATGTCAGCAAAGGGGCCTGGGTCCGTCATCATCTTTTCCACCAGGGA
TCATTACTTAACTGATTATGGATATCAAAAGAGAATGGACCAATTAGAAG
CGAACGGAACCtggaaattagccaaaagtaTTTTAATTCCAAAGTATGAT
AAACTTGGAGATCAAAATCTTGGAAGATACAAAAAAACTGAAGCCAGAAT
TTCAGCATATAAAATATTGTGATTAACCAACGTATTTTAAGCGACGGATA
AACTCTCTTGTTAGGAAAAAGTTAAATCAAGTTGAAAGTCTTTGAAGCAC
ACTTCTTGTTCATCTGTAAGGTTTTGAATGCAAAGCTCCTTTGAACCTCT
GAAGGTCGATATTCTTTCAAACTTCAACATCATCAAAGGctaaaaagcaa
ttttagttttcgtttttaaacttttgttataaatgcaaTCCTGCCTCTTT
GGCTTAACGTATAAATTGAATAGGTATGATATTTACAATTTAGTTATTCT
ATCTTTATATATCTgtaattagtatatgtaatcacatgataacgagtgca
attcgaatataataaTTGCacgaataatttttttgttattaattttccga
gtccgaaaggacgaggaaaattcgaaac Run BLAST on NCBI protein sequence of TCONS_00004378-protein >TCONS_00004378-protein ID=TCONS_00004378-protein|Name=TCONS_00004378-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MDQKVEIIDVTKVNERVKAAVEHTSQWSGKAQPYAEDLVEHYDAEAEGYE
EMYLTMGYHDHEKVNEIACELIGDQATRGEIEVLDMGCGTGLVGDQLFKN
GGFKNIVGVDASVGMMAKAKAKGSYKDTIKLLLGKPETFPEILKNRFGLV
VCCAVLAEGHCDKKLFDEMVMSAKGPGSVIIFSTRDHYLTDYGYQKRMDQ
LEANGTWKLAKSILIPKYDKLGDQNLGRYKKTEARISAYKIL Run BLAST on NCBI transcript from alignment at sc0000044:11495..13517- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004378 ID=TCONS_00004378|Name=TCONS_00004378|organism=Clytia hemisphaerica|type=transcript|length=2023bp|location=Sequence derived from alignment at sc0000044:11495..13517- (Clytia hemisphaerica)
CTATAAATTTGATTAGCGAGGCGGGGATATTGCCAAAGCAAAGGTATGTA
GAAGCCTTAGAATTGAACAACTAAGGGAGTGAGACAAGGCTATAAACGTA
AAGACAGCAGATTAAGTCTTTTGAAATGCAATTAGACAGGGTTTCAACCA
AGATACCAAAGAATCAAGAAGACCAAACTAAACTTAATTGAGATTGTGAG
ACAAGAATGTAGAATCATAAGCAGTACGCATTTTTTATGAGAACATCCAA
AATTTTTGAAGCCTTCGGATGTTCTAAACTTTCGACTTTTAAGCCTAAAA
ATGTTCATGTTCTGATTTCACCATTTTGTTAGTATTTATGTTCAATTTCC
TAAGTAATCGTGTTTTAGAGCCCGCAAAGCCTTAGAATGTTCTTTACTTG
TTCTTAATATTCGTATTCGTATTTAGTTTTTGTTCTTTTGAAAGAATGTG
TAAACCAATTAAATCATAAGACTTCAAGTTAACTATAATTTCAATCAAAT
TTATTTTTAAGATGGATCAAAAAGTAGAAATCATCGATGTTACCAAAGTG
AATGAGAGAGTAAAAGCTGCTGTAGAGCATACTTCTCAATGGTCAGGGAA
GGCTCAACCTTATGCCGAAGACCTTGTGGAACATTATGATGCAGAAGCAG
AAGGCTATGAAGAGATGTATTTAACAATGGGTTACCATGACCACGAGAAA
GTAAACGAGATTGCATGTGAACTTATCGGAGACCAGGCAACTAGAGGAGA
AATTGAAGTTCTCGACATGGGTTGTGGAACCGGACTTGTTGGAGATCAAC
TCTTCAAGAATGGTGGCTTCAAGAACATCGTCGGTGTTGATGCATCAGTT
GGTATGATGGCAAAGGCAAAAGCTAAGGGATCGTATAAGGATACAATCAA
GCTGTTGCTTGGAAAGCCTGAGACTTTCCCGGAAATTCTTAAAAACAGGT
AAGGCGGACCATAATATTTTTTTGAAACCTTTCTTGTTTGAAAGAGCTGC
AAATAATCTCAAAATTAACTTAAATTTTTAAAGAAAACAGTATGTATACC
ATTAGAACAAAAACTGAGGTCGGGTAACCATTTCTCCAAATTTCCTTTAC
CAGGACAAAATCATTGCATCATGGTTTCAGTAAAATGAAATTCCTATTCC
ATATTAATTAATTGATAGTTTTTCCGAGCTTCAAACATTAGAATTTAGAT
CTATAAAGGTTATTTACCATCCCCAGTAGTTTCCTTCAAATTACCGCCAC
TGGAAAATATTGCCACTGTGTCACTGATGATAATATAAATTATTCTGATC
TCTCATTTTACTGTCTTTATGTCAGGTTTGGACTTGTTGTCTGCTGTGCA
GTTTTGGCTGAAGGTCATTGCGACAAGAAACTCTTTGATGAGATGGTGAT
GTCAGCAAAGGGGCCTGGGTCCGTCATCATCTTTTCCACCAGGGATCATT
ACTTAACTGATTATGGATATCAAAAGAGAATGGACCAATTAGAAGCGAAC
GGAACCTGGAAATTAGCCAAAAGTATTTTAATTCCAAAGTATGATAAACT
TGGAGATCAAAATCTTGGAAGATACAAAAAAACTGAAGCCAGAATTTCAG
CATATAAAATATTGTGATTAACCAACGTATTTTAAGCGACGGATAAACTC
TCTTGTTAGGAAAAAGTTAAATCAAGTTGAAAGTCTTTGAAGCACACTTC
TTGTTCATCTGTAAGGTTTTGAATGCAAAGCTCCTTTGAACCTCTGAAGG
TCGATATTCTTTCAAACTTCAACATCATCAAAGGCTAAAAAGCAATTTTA
GTTTTCGTTTTTAAACTTTTGTTATAAATGCAATCCTGCCTCTTTGGCTT
AACGTATAAATTGAATAGGTATGATATTTACAATTTAGTTATTCTATCTT
TATATATCTGTAATTAGTATATGTAATCACATGATAACGAGTGCAATTCG
AATATAATAATTGCACGAATAATTTTTTTGTTATTAATTTTCCGAGTCCG
AAAGGACGAGGAAAATTCGAAAC Coding sequence (CDS) from alignment at sc0000044:11495..13517- >TCONS_00004378 ID=TCONS_00004378|Name=TCONS_00004378|organism=Clytia hemisphaerica|type=CDS|length=1458bp|location=Sequence derived from alignment at sc0000044:11495..13517- (Clytia hemisphaerica)
GTTTGGACTTGTTGTCTGCTGTGCAGTTTTGGCTGAAGGTCATTGCGACA
AGAAACTCTTTGATGAGATGGTGATGTCAGCAAAGGGGCCTGGGTCCGTC
ATCATCTTTTCCACCAGGGATCATTACTTAACTGATTATGGATATCAAAA
GAGAATGGACCAATTAGAAGCGAACGGAACCTGGAAATTAGCCAAAAGTA
TTTTAATTCCAAAGTATGATAAACTTGGAGATCAAAATCTTGGAAGATAC
AAAAAAACTGAAGCCAGAATTTCAGCATATAAAATATTGTGAATGGATCA
AAAAGTAGAAATCATCGATGTTACCAAAGTGAATGAGAGAGTAAAAGCTG
CTGTAGAGCATACTTCTCAATGGTCAGGGAAGGCTCAACCTTATGCCGAA
GACCTTGTGGAACATTATGATGCAGAAGCAGAAGGCTATGAAGAGATGTA
TTTAACAATGGGTTACCATGACCACGAGAAAGTAAACGAGATTGCATGTG
AACTTATCGGAGACCAGGCAACTAGAGGAGAAATTGAAGTTCTCGACATG
GGTTGTGGAACCGGACTTGTTGGAGATCAACTCTTCAAGAATGGTGGCTT
CAAGAACATCGTCGGTGTTGATGCATCAGTTGGTATGATGGCAAAGGCAA
AAGCTAAGGGATCGTATAAGGATACAATCAAGCTGTTGCTTGGAAAGCCT
GAGACTTTCCCGGAAATTCTTAAAAACAGGTTTGGACTTGTTGTCTGCTG
TGCAGTTTTGGCTGAAGGTCATTGCGACAAGAAACTCTTTGATGAGATGG
TGATGTCAGCAAAGGGGCCTGGGTCCGTCATCATCTTTTCCACCAGGGAT
CATTACTTAACTGATTATGGATATCAAAAGAGAATGGACCAATTAGAAGC
GAACGGAACCTGGAAATTAGCCAAAAGTATTTTAATTCCAAAGTATGATA
AACTTGGAGATCAAAATCTTGGAAGATACAAAAAAACTGAAGCCAGAATT
TCAGCATATAAAATATTGTGAATGGATCAAAAAGTAGAAATCATCGATGT
TACCAAAGTGAATGAGAGAGTAAAAGCTGCTGTAGAGCATACTTCTCAAT
GGTCAGGGAAGGCTCAACCTTATGCCGAAGACCTTGTGGAACATTATGAT
GCAGAAGCAGAAGGCTATGAAGAGATGTATTTAACAATGGGTTACCATGA
CCACGAGAAAGTAAACGAGATTGCATGTGAACTTATCGGAGACCAGGCAA
CTAGAGGAGAAATTGAAGTTCTCGACATGGGTTGTGGAACCGGACTTGTT
GGAGATCAACTCTTCAAGAATGGTGGCTTCAAGAACATCGTCGGTGTTGA
TGCATCAGTTGGTATGATGGCAAAGGCAAAAGCTAAGGGATCGTATAAGG
ATACAATCAAGCTGTTGCTTGGAAAGCCTGAGACTTTCCCGGAAATTCTT
AAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004378-exon-sc0000044-1575043694:13475..13517 | TCONS_00004378-exon-sc0000044-1575043694:13475..13517 | Clytia hemisphaerica | exon |
| TCONS_00004378-exon-sc0000044-1575043694:12570..13006 | TCONS_00004378-exon-sc0000044-1575043694:12570..13006 | Clytia hemisphaerica | exon |
| TCONS_00004378-exon-sc0000044-1575043694:11495..12192 | TCONS_00004378-exon-sc0000044-1575043694:11495..12192 | Clytia hemisphaerica | exon |
| TCONS_00004378-exon-sc0000044-1510915933:13475..13517 | TCONS_00004378-exon-sc0000044-1510915933:13475..13517 | Clytia hemisphaerica | exon |
| TCONS_00004378-exon-sc0000044-1510915933:12570..13006 | TCONS_00004378-exon-sc0000044-1510915933:12570..13006 | Clytia hemisphaerica | exon |
| TCONS_00004378-exon-sc0000044-1510915933:11495..12192 | TCONS_00004378-exon-sc0000044-1510915933:11495..12192 | Clytia hemisphaerica | exon |
| TCONS_00004378-exon-sc0000044-1491911889:13475..13517 | TCONS_00004378-exon-sc0000044-1491911889:13475..13517 | Clytia hemisphaerica | exon |
| TCONS_00004378-exon-sc0000044-1491911889:12570..13006 | TCONS_00004378-exon-sc0000044-1491911889:12570..13006 | Clytia hemisphaerica | exon |
| TCONS_00004378-exon-sc0000044-1491911889:11495..12192 | TCONS_00004378-exon-sc0000044-1491911889:11495..12192 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:11495..13517 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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