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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004377 ID=TCONS_00004377|Name=TCONS_00004377|organism=Clytia hemisphaerica|type=transcript|length=2073bp ATTATTTTCGGTTAGTCTTTTATTGGAATAAGACGTTTTTATAATACTTC TATCTCTAAAAATGGATTTGAATATAGATTTAAGGCAATCGCTTCAATGC ATgcgaaaaaatgatgaaatgtgTGATGTTTGTATTCTCTCTAAAGAGGG CACAAAATATCCTGCACATAAACTCATATTAGCAGCTTCAAGTCCTGTTT TCAAAGTCATGGTCACCAAAGATTTCAAAGAACTTCAATCGAAGGAAATA CATTTGAGAGACATCGAAGATTCGCTAATGACCACAATTTTGGATTTTAT GTATACTGGTGAACTGAGCATGACCAATGAAAATGCGTTGGATCTCTTCA TGCTTGCGGATAGAATGGAGTTGGCAAATCTTTTCACATCTTGCACAAGA TACATTAAAGATCATATTGACGCTAATAATTGCTTAGGTGTTCAACAAAT TGCAGAGCGTTATAACCAGCTGAAATTGAATGATTTTGCTGAATCATatc tattacgtcactttcaagtTTTCGCATCTACTGAAGATTTCTTAGATCTC ACATCCAGTGAACTGATTAAAATCTTATGGAGAGATGAACTAAACGTAGA AAAAGAGGaatatttgattgattttattttgaaatgggTCGACCATGATT TGGAAAATAGAAATGGCGAACTTGAGAAATTGATGAAGGGGTTACGTTTC CCGTTgatgaattttgactttatcgaagGTAAATTCCGAACGCACCCACG CTGGAAAACCAATAAAAAGATGGCAAAACTCGTCAAAACTATTTACAAAG GTTGTTTCCAAATCTTCCATCGAATTAATTTCGACCCATACCCTTCACTC AAATGTTTACGTTATCAATATCGGTTACCGTCACAAGTGATCTTCTTATA CGGTGGCTGGAATCGCGGACGGACACTCGATACTACGGAGTGTTTCAACA TAAAGACTGGGTACTGGTCACCAGCCTCCCATTTGAAAGATGAGACAGAA GGCAGAAGTTATTTTGGCATTGATCAATTGAACGGAGAAGTTTATATGGC AGGTGGCTACAATGGTCGTTCTTATTTGAACACAATTCGTAAATTCAACC CATCTACAAAAGAATGGGCCAGCATTACGCCCATGCATTACAGGCGTTGC TTTACATCCGCCCTAGCATATAATTCCAATCTCTACGTATTGGCTGGTTT CGACGGCGTCCGAAGATTAACTTCTGTGGAAAAATATTGTCcaaaaaata aacaatggaCTGTAATTAGCCCGTTAAATGTGCCACGTAGTGACGCAGCG GCTGTGGTGCACCGTGGCCGGATGTACATCTTTGGTGGTTACGCAGGCGA TGCTTTAAATAGTGGCGAAATTTACGACGCTGAACGTGACAACTGGACCC ACATTACCAACATGAATGTCAAACGAAGTGGTGCGTCTGCCGTATCTTTC CCcgaagaaaacaaaataatggTCATTGGCGGGTACAACGGCACCTCTCG TGTCGCAACCGTTGAAATTTACGACCCTGTCACCAATAGATGGACCATTG GTCCACCCATGTCTCAAGAAAGAAGTAACTTCGCTACATGTGTCATTGAG AATAAGCTCTATGTCATGGGAGGGTATACTGGTTCAACGACTTTGAGAGA TGTTGagatttttgatttgaaagatAACACATGGCAATTCGGACGACCTA TCGGTGCTGGACGATCAGCTATGAAAGCTATTTGCTTAGATATCGCTAAA GCAGACGAGTTCTTTGAAGGTGGTTTAGATCCCGTCCCCTGGATGAATAA CAACGGCGCCGCCGAAGGAGGAGCCAGGAACGAAGGAAGCCTTTACGAAA TCAACACCCTAGAAGGATTGGCAGCCTCTAGTAGTGATAGTAACGAAAGC CAATAAGACTTTTTAGCCATTAAATACcgaaaatatgtaaattttagATT CttagttattttttatttagttttttagttttattcAGTATTTTTTATAC ATCTTTTGTAATATATCCTTTTTTAATTCCATTATAGAAAAaccgaaaaa tattttaaaatttcaaaacccGC Run BLAST on NCBI transcript from alignment at sc0000044:775497..781080+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004377 ID=TCONS_00004377|Name=TCONS_00004377|organism=Clytia hemisphaerica|type=transcript|length=5584bp|location=Sequence derived from alignment at sc0000044:775497..781080+ (Clytia hemisphaerica) ATTATTTTCGGTTAGTCTTTTATTGGAATAAGACGTTTTTATAATACTTC
TATCTCTAAAAATGGATTTGAATATAGATTTAAGGCAATCGCTTCAATGC
ATgcgaaaaaatgatgaaatgtgTGATGTTTGTATTCTCTCTAAAGAGGG
CACAAAATATCCTGCACATAAACTCATATTAGCAGCTTCAAGTCCTGTTT
TCAAAGTCATGGTCACCAAAGATTTCAAAGAACTTCAATCGAAGGTAGGT
GAAGTCAAAAGCaatttttccttagaaaatacacTGAACGGTGGGGTTAC
CCCGCGTTTGATCAAAGTATTTGGTTGTTGTCGATTATTTTACAAGTACT
TGTGCTTTGGCATTGTAAACCGTGATTCCGGTAAATAATACTAGCCTCCT
TGATATGAACAATTTGCCTAGAAAGATACTAGTACATCTTACGAACATAG
ACTTCCATTTTGCCgactagaaaattatttttagaggTACATTCACATTC
TTTTCCTTAGGAAATATAGAGTTTCcacaattttttctttgtagatttaa
tttttatatctttacatttttttccttAGGAAATACATTTGAGAGACATC
GAAGATTCGCTAATGACCACAATTTTGGATTTTATGTATACTGGTGAACT
GAGCATGACCAATGAAAATGCGTTGGATCTCTTCATGCTTGCGGATAGAA
TGGAGTTGGCAAATCTTTTCACATCTTGCACAAGATACATTAAAGATCAT
ATTGACGCTAATAATTGCTTAGGTAAGTTTCTCTCGTTAGCTAAGTTAAG
CATCAGATATCTACGGTTCATCTCAACAATTCGAATCCCAACAGCCatat
atttgatttttcttagTTATTCGGAGCTTGATGTCTTTCATGAGGCAACT
GAGGCAAAAATTTCCTCTGTCGTACGAACTtctgttattattattttgct
AGTAATTGCGGTAATAGGTTTTGAGGCTTGTTTTGCGAATTCCAATGTCT
TTATATTCGTCCGAGGTTTATTTTTTCGCGAGCATCGTCATTTTTTCAAG
GAAGTTCATCACCCCTGTCTCGATACCTTTCAGTCTAAATACTTACATga
ttaaatgttttgttttatatTAGCGTTTGGGTTAGGCTGCGCGCATTCCc
ttctgatatgttttgatatcaaaatcaattctggGGATGTGCACAGAGCC
TACGTTTGGGTATGATAACGATTCAAAATATTAATAATGAAATACATTTC
TAATTATAGGTGTTCAACAAATTGCAGAGCGTTATAACCAGCTGAAATTG
AATGATTTTGCTGAATCATatctattacgtcactttcaagtTTTCGCATC
TACTGAAGATTTCTTAGATCTCACATCCAGTGAACTGATTAAAATCTTAT
GGAGAGATGAACTAAACGTAGAAAAAGAGGaatatttgattgattttatt
ttgaaatgggTCGACCATGATTTGGAAAATAGAAATGGCGAACTTGAGAA
ATTGATGAAGGGGTTACGTTTCCCGTTgatgaattttgactttatcgaag
gtaaaatatttgattttttttttggtcatgTCTCACAAGCTTGGGGTTTC
CTCAGATGAGGAACGGAAACAATGAACAGCAAAATGATACATTTAAGGAG
AAGGTAGGTCTGTTTCAAGGAACCATATATATATGGTATATGGTGTGTTT
TTGTGTTTGTGGGATGATCACATTTATGAGACATTTTTAATTCTTCTCGA
AAGCCTGGTGTACCATACCGTACATGCTTTTGGTACTCAGATACATTGAC
TACGAGAGTGTGGGAAAGTATATTGGGTGGTGACCTTGCTCGCATGAGTA
ATAccaagtttatgtatcggaggatatcgagggcgacggtaagtgaaatc
gatacaaaacaaagtcgatagtcgatgtacggctctatatcgcctttaat
cacctaaacagacgactgtattttggtgtttttaccatcgtcgagcaaag
tggaaggtgattttggagacagtCAACTTTGTTTTATACCGTCCCTCGAT
TTATCtccaatacataaactcgctattgtcaACGACACGCCATGACTGAA
TTACCCACAGTCCTCACTTTAGTATTTTCCATGTCCTGTTTTACGTCTTT
AAAACGtttagtttttaaataagagcgctatcgtttgcttactcatcaat
tttaattcacaagcttttcacattggattgacacagatgtggagccaGAT
TCGTCAGTAAGaggaaagaaaaacatctttttgcttatatcagcgtAATT
TAatactgtcctgatatgaaatatgtgcctgatttgaaacgggaacactt
atgtaaaaattaaaCCTTTAACCCTCAACTTTTAATCTTAATTTTATAAA
GCTTGTCTCTCTCTTACAGGTAAATTCCGAACGCACCCACGCTGGAAAAC
CAATAAAAAGATGGCAAAACTCGTCAAAACTATTTACAAAGGTTGTTTCC
AAATCTTCCATCGAATTAATTTCGACCCATACCCTTCACTCAAATGTTTA
CGTTATCAATATCGGTTACCGTCACAAGTGATCTTCTTATACGGTGGCTG
GAATCGCGGACGGACACTCGATACTACGGAGTGTTTCAACATAAAGACTG
GGTACTGGTCACCAGCCTCCCATTTGAAAGATGAGACAGAAGGCAGAAGT
TATTTTGGCATTGATCAATTGAACGGAGAAGTTTATATGGCAGGTATGAA
AATGATTAGTATTCTGTGTTTAATTGCATACCTTTTTTAAGATGATGACA
CCCATTAACGAATTCGTGCTCGTGCTCTCATATACTATCTCCAGTTTTCT
ATGATTCAGACTCTGCCTTACTTGGATCCTATATTGacaatttcaataat
tttttctctggaactCAAATCGAATGAAGCGAAAATTTTAGTAGGCTTGT
GTATATCTTTTAGCGAAAAAGCTTGTAGACAACGCTTCGGCACTCCTGTC
CCATTGAAATGTGTCGCTAATGGTGGGGAATAATTTTCCTAACGGAGATG
AAGGTTACAACAGTATAATGAAATTTCTCACTTAGGACGACTACAATAAC
AAACTAGTGTGTATGAGTCCCTTGGATTATGTAAAATACGGGGTGGAACC
ATATTGACAAAATATTAATATTGTAATATTTCTCCATATTTTCAAACAGG
TGGCTACAATGGTCGTTCTTATTTGAACACAATTCGTAAATTCAACCCAT
CTACAAAAGAATGGGCCAGCATTACGCCCATGCATTACAGGCGNCTTTGG
CATTGATCAATTGAATGGAGAAGTTTATATGGCAGGTATGAAAATGATTA
GCATTCTGTGTTAATTGTGTTGAGAAAGTTGTCAAATTACCTTTTAATTG
CTGCATACCATTTTCATATATCTCCAGTTTTCTACGATTAAGGACTCTGC
CTTACTTGAATCCTTTATTGacaatttcaataatttttctctGGAACTCA
AATCGAATGAAGCGAAAATTTTAGTAGGCTTGTGTATATCTTTTAGCGAA
AAAGCTTGTAGACAACGATTCGGCACTCCTGAATAATTTTCCTAACGGAG
ATGAAGGTTACAACAGGATAATGAAATTTTCTCACTTAGGACGACTGCAA
TAACAAACTATTCTAGTGTGTATGAGTCCCTTGGATTATGTAATACGGAG
TGGAACCATATTGACAAAATATTAATATTGTGATATTTCTCCATATTTTC
AAACAGGTGGCTACAATGGTCGTTCTTATTTGAACACAATTCGTAAATTC
AACCCATCTACAAAAGAATGGGCCAGCATTACGCCCATGCATTACAGGCG
TTGCTTTACATCCGCCCTAGCATATAATTCCAATCTCTACGTATTGGCTG
GTTTCGACGGCGTCCGAAGATTAACTTCTGTGGAAAAATATTGTCcaaaa
aataaacaatggaCTGTAATTAGCCCGTTAAATGTGCCACGTAGTGACGC
AGCGGCTGTGGTGCACCGTGGCCGGATGTACATCTTTGGTGGTTACGCAG
GTGATTAATTTTATTGTTTCCTAAGTTTGTATTTAAAGCTACAGTTATTT
AAAATTACAGCTATTTATTCGACGTTCTAATATTGGacacgctccattat
tcgatgataTTAGATTATATAAGTCACCGTCGATAAGAAACCCTCATAAA
CGACACCCTATCATTCGACAcgttcccttattcgatgaaaatgaaatttg
ctttgaaaatatAATCAGAGAGCGTCGAACGTACTTTGGAACGGTACTTT
TCAAATGAAGTTGGGTCAAGTTAACAAATATCATACAGACTTAAAAAAAC
TTGGAGAAGTCATTGCTTAAATAAGATTTTGTTTAAGTTTATCTTAGAGC
ATTTCAAATATCAGCCGATTAAATTCTGTTTGTCAACCATTCTGAAGCAG
TTTTCtcttcaaatttaaaatatcatTCTTTAAATGTTTACTATTTACTT
CATTTTCTTTGTAGGCGATGCTTTAAATAGTGGCGAAATTTACGACGCTG
AACGTGACAACTGGACCCACATTACCAACATGAATGTCAAACGAAGTGGT
GCGTCTGCCGTATCTTTCCCcgaagaaaacaaaataatggTCATTGGCGG
GTACAACGGCACCTCTCGTGTCGCAACCGTTGAAATTTACGACCCTGTCA
CCAATAGATGGACCATTGGTCCACCCATGTCTCAAGAAAGAAGTAACTTC
GCTACATGTGTCATTGAGAATAAGCTCTATGTCATGGGAGGGTATACTGG
TTCAACGACTTTGAGAGATGTTGagatttttgatttgaaagatAACACAT
GGCAATTCGGACGACCTATCGGTGCTGGACGATCAGCTATGAAAGCTATT
TGCTTAGGTAAGTGTTTTATACTTGGAAAGAAAATGTTTACAAAGCCGAG
AACGATCCATTCAGAGTTGCTATAACagcgttttttatattttccttgag
actttttatctttgtatctcaagaaataaacattgaaacatGGTTGTCCA
CCTGATTTACCAGCAAGTGTCCCCATAGTATTTATTAACATTATTCAAAT
CAATTGAAATATATAATATTCTGAGCAGTGTAGGCGGCAACATTAAGACA
CTCGAAATTAACATATTTTGGCCAAGGGGCCCTTACATTGTGTTCAGAAA
GATACCGAGCGACCTCAATATTTCATCAGTTCTGATATCCATTTCTTTAG
ATATCGCTAAAGCAGACGAGTTCTTTGAAGGTGGTTTAGATCCCGTCCCC
TGGATGAATAACAACGGCGCCGCCGAAGGAGGAGCCAGGAACGAAGGAAG
CCTTTACGAAATCAACACCCTAGAAGGATTGGCAGCCTCTAGTAGTGATA
GTAACGAAAGCCAATAAGACTTTTTAGCCATTAAATACcgaaaatatgta
aattttagATTCttagttattttttatttagttttttagttttattcAGT
ATTTTTTATACATCTTTTGTAATATATCCTTTTTTAATTCCATTATAGAA
AAaccgaaaaatattttaaaatttcaaaacccGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00004377-exon-sc0000044-1491911889:775497..775740 | TCONS_00004377-exon-sc0000044-1491911889:775497..775740 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1510915933:775497..775740 | TCONS_00004377-exon-sc0000044-1510915933:775497..775740 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1575043694:775497..775740 | TCONS_00004377-exon-sc0000044-1575043694:775497..775740 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1491911889:776076..776268 | TCONS_00004377-exon-sc0000044-1491911889:776076..776268 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1510915933:776076..776268 | TCONS_00004377-exon-sc0000044-1510915933:776076..776268 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1575043694:776076..776268 | TCONS_00004377-exon-sc0000044-1575043694:776076..776268 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1491911889:776756..777046 | TCONS_00004377-exon-sc0000044-1491911889:776756..777046 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1510915933:776756..777046 | TCONS_00004377-exon-sc0000044-1510915933:776756..777046 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1575043694:776756..777046 | TCONS_00004377-exon-sc0000044-1575043694:776756..777046 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1491911889:777916..778239 | TCONS_00004377-exon-sc0000044-1491911889:777916..778239 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1510915933:777916..778239 | TCONS_00004377-exon-sc0000044-1510915933:777916..778239 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1575043694:777916..778239 | TCONS_00004377-exon-sc0000044-1575043694:777916..778239 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1491911889:779253..779546 | TCONS_00004377-exon-sc0000044-1491911889:779253..779546 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1510915933:779253..779546 | TCONS_00004377-exon-sc0000044-1510915933:779253..779546 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1575043694:779253..779546 | TCONS_00004377-exon-sc0000044-1575043694:779253..779546 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1491911889:780011..780403 | TCONS_00004377-exon-sc0000044-1491911889:780011..780403 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1510915933:780011..780403 | TCONS_00004377-exon-sc0000044-1510915933:780011..780403 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1575043694:780011..780403 | TCONS_00004377-exon-sc0000044-1575043694:780011..780403 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1491911889:780747..781080 | TCONS_00004377-exon-sc0000044-1491911889:780747..781080 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1510915933:780747..781080 | TCONS_00004377-exon-sc0000044-1510915933:780747..781080 | Clytia hemisphaerica | exon |
TCONS_00004377-exon-sc0000044-1575043694:780747..781080 | TCONS_00004377-exon-sc0000044-1575043694:780747..781080 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000044 | supercontig | sc0000044:775497..781080 + |
Blast
BLAST of TCONS_00004377 vs. Swiss-Prot (Human)
Match: KLH10 (Kelch-like protein 10 OS=Homo sapiens GN=KLHL10 PE=1 SV=1) HSP 1 Score: 321.627 bits (823), Expect = 1.710e-99 Identity = 166/557 (29.80%), Postives = 300/557 (53.86%), Query Frame = 2
Query: 101 MRKNDEMCDVCILSKEGTKYPAHKLILAASSPVFKVMVTKDFKELQSKEIHLRDIEDSLMTTILDFMYTGELSMTNENALDLFMLADRMELANLFTSCTRYIKDHIDANNCLGVQQIAERYNQLKLNDFAESYLLRHFQ-VFASTEDFLDLTSSELIKILWRDELNVEKEEYLIDFILKWVDHDLENRNGELEKLMKGLRFPLMNFDFIEGKFRTHPRWKTNKKMAKLVKTIYKGCFQIFHRINFDPYPSLKCLRYQYRLPSQVIFLYGGWNRGRTLDTTECFNIKTGYWSPASHLKDETEGRSYFGIDQLNGEVYMAGGYNGRSYLNTIRKFNPSTKEWASITPMHYRRCFTSALAYNSNLYVLAGFDGVRRLTSVEKYCPKNKQWTVISPLNVPRSDAAAVVHRGRMYIFGGYAG-DALNSGEIYDAERDNWTHITNMNVKRSGASAVSFPEENKIMVIGGYNGTSRVATVEIYDPVTNRWTIGPPMSQERSNFATCVIENKLYVMGGYTGSTTLRDVEIFDLKDNTWQFGRPIGAGRSAMKAICL-DIAKADEF 1762
+R ++CDV ++ G ++ AHK IL + S F+ + T + + K ++ I +M I+++ YT + +T +N L AD+ + + C ++K + +NC+G+ + + Y +L A ++L +F+ + + +FL+L+ +EL I+ +DELNV++E+ + + ILKW+ HD +NR + L+ +R LM+ ++ + + K +++ ++ K + + +N + RLP ++F GGW+ G + E ++ + W + +E R+Y G L G VY+ GG++ Y N++++F+P K W + PMH RRC+ S + +Y + GFDG RL + E+Y P+ QWT+I+P++ RSDA+A G++YI GG+ G + L + E+Y+ E + WT I M +RSG +++ E + +GG++G +R+ + E Y PV N W P M RSNF V+++ L+V+GG+ G TT +VE +D K + W + RSA+ + +A +E+
Sbjct: 32 LRLEGKLCDV-VIKVNGFEFSAHKNILCSCSSYFRALFTSGWNNTEKKVYNIPGISPDMMKLIIEYAYTRTVPITPDNVEKLLAAADQFNIMGIVRGCCEFLKSELCLDNCIGICKFTDYYYCPELRQKAYMFILHNFEEMVKVSAEFLELSVTELKDIIEKDELNVKQEDAVFEAILKWISHDPQNRKQHISILLPKVRLALMHAEYFMNNVKMNDYVKDSEECKPVIINALKAMYDL--NMNGPSNSDFTNPLTRPRLPYAILFAIGGWSGGSPTNAIEAYDARADRWVNVTC--EEESPRAYHGAAYLKGYVYIIGGFDSVDYFNSVKRFDPVKKTWHQVAPMHSRRCYVSVTVLGNFIYAMGGFDGYVRLNTAERYEPETNQWTLIAPMHEQRSDASATTLYGKVYICGGFNGNECLFTAEVYNTESNQWTVIAPMRSRRSGIGVIAYGEH--VYAVGGFDGANRLRSAEAYSPVANTWRTIPTMFNPRSNFGIEVVDDLLFVVGGFNGFTTTFNVECYDEKTDEWYDAHDMSIYRSALSCCVVPGLANVEEY 581
The following BLAST results are available for this feature:
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