TCONS_00004374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004374
Unique NameTCONS_00004374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1851

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004374 ID=TCONS_00004374|Name=TCONS_00004374|organism=Clytia hemisphaerica|type=transcript|length=1851bp
gaaaaaagctacctatctttaagcgattgaaaaatattgttgaaattgaa
aattttgaaaaaaaacttcttggaaataaagtagagatgttaaaattttt
gtaaaacctcttttcctctagatttgagagagattttaaatttgatcgac
gtttcgggggccacatactgtagcaGTACTACTTACAATCTAAATTCCAG
AAGATAACGTTCTTCACCGGCAGAGAGAGATGGCCTGGAATCAAAAAGGA
GAAATATCAAGGAGAAAGATGAACAAATATACTGCAATTTTTGCTTTTGT
GGGAGGATTCGTTTTAGTGTTTGCTATTTGGAACATCCAATATGTTTATA
ATTCATCTTCGACAAAGGAGCTGACAACTTTAACTGAGGAACGAATGCAG
AAGATTCAAAATGAACAAATTCTAAGAATCAAAGATCTTTTATTTCCTGA
TAAAgGTAATACAACTTCGATACCTACAACAAAATCGACCGCCCAAACGC
CTACATCAGAGAGCGTCATCGTTAAACAGCTGAATGAAATACGAAATAAT
ATGAAAGATTTTGacgataaaattaaaaaattggcTGATTGGGAAAGCTA
TCGCGTACAgcgtgaaaaattaaaaacattagtCCATGTTCAGAATTCCA
AAGAAAGCGAGAATAAGAAATACAGTATGTTTCGTCCTCATGTTTTAGTT
GATAAAGTCACTTTGGATTGCAAAGAACACTATAAAGTTATCGTTCTGGT
AACCTCATTTGCGAAGCACTTCGATCGCCGCCAATGGATTCGAAAAGCAT
GGGGTAACCAAACATTCTGGAACGAAACTCATGAACATtggcaagtgatt
tttaacatAGGGGCTGTGCAACGGGATATGAAGGATACTTATGATAAATT
AATGGAAGAATCTCAGAAATATGGAGATATGTTGATTCTAGACATCCAAG
AAGATTTTCATAAACTTTCTCAAAAAGTAATGACGGCTTTATTCTGGGTT
TAcactaaatttaatttcgaGTTTGTTTTCAAAAGTGATGATGATGTCTT
TATCCATATGCAGCGCTtgttgacaaaattgaacggaacTTGGTCGAAGG
AGAATTTTGTTGGTAACGCAATGTTTGGACAGCCTCCAGAACGGAATAAA
GGACGTTATGGTGTATCCCTTGAAGAATGGcctaagaaattttttgatcc
tTATTGCAGTGGAGGTGGTTACATCTTATCGCACTATATAATTGAGCATA
TGATTCCCTATTTTAATTGGGAAACCCCTTTAAAGATAGATGACGCGTAT
ATTGGACATTTGGTGAACCTTGCAGGTGGAAAAGTGAAACACGAATTTAA
AAGTTTCCTTATGTATAACGTTAAACTAGAATACTCAGCAGATTTGGTTG
TCACTCATCCAGTTAAATTTCCACCGTTTCGTGAATTTCTAGAAGTTAAA
GCCGGTCTCGAACTTGGACGTATCAAAACTCATGAGATGCAAAATTTCAC
TCGCTTAAGAGATTATCAAGATCACAAGAAAAAACTTCAAGCTTTGTTAA
GTACTactaaaaaaactttgactAAATCTGTAGCTCTGGATGTAAAAAGG
TCAACACCTACTACAGCCAGAACTTTAAAGGACGTTGGCCTTAATGTTAC
CACGGCTTCCCCAAAGTAGCAGTTGAATAGTAGGCCTACAAAATCCACAA
AAAGTTGTCGCAACTCTAGAAGCTTCAgataataccttatcggggaaaac
ttcgtcggggaaaattttcgtcggtgaaaattttcgtcggggaaaaattc
gtcataTGTTgatagttggtaaacgcattaaggccggggaaaattttcgt
c
Run BLAST on NCBI

protein sequence of TCONS_00004374-protein

>TCONS_00004374-protein ID=TCONS_00004374-protein|Name=TCONS_00004374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=479bp
MAWNQKGEISRRKMNKYTAIFAFVGGFVLVFAIWNIQYVYNSSSTKELTT
LTEERMQKIQNEQILRIKDLLFPDKGNTTSIPTTKSTAQTPTSESVIVKQ
LNEIRNNMKDFDDKIKKLADWESYRVQREKLKTLVHVQNSKESENKKYSM
FRPHVLVDKVTLDCKEHYKVIVLVTSFAKHFDRRQWIRKAWGNQTFWNET
HEHWQVIFNIGAVQRDMKDTYDKLMEESQKYGDMLILDIQEDFHKLSQKV
MTALFWVYTKFNFEFVFKSDDDVFIHMQRLLTKLNGTWSKENFVGNAMFG
QPPERNKGRYGVSLEEWPKKFFDPYCSGGGYILSHYIIEHMIPYFNWETP
LKIDDAYIGHLVNLAGGKVKHEFKSFLMYNVKLEYSADLVVTHPVKFPPF
REFLEVKAGLELGRIKTHEMQNFTRLRDYQDHKKKLQALLSTTKKTLTKS
VALDVKRSTPTTARTLKDVGLNVTTASPK
Run BLAST on NCBI

transcript from alignment at sc0000044:756715..769560+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004374 ID=TCONS_00004374|Name=TCONS_00004374|organism=Clytia hemisphaerica|type=transcript|length=12846bp|location=Sequence derived from alignment at sc0000044:756715..769560+ (Clytia hemisphaerica)
gaaaaaagctacctatctttaagcgattgaaaaatattgttgaaattgaa aattttgaaaaaaaacttcttggaaataaagtagagatgttaaaattttt gtaaaacctcttttcctctagatttgagagagattttaaatttgatcgac gtttcgggggccacatactgtagcaGTACTACTTACAATCTAAATTCCAG AAGATAACGTTCTTCACCGGCAGGTAGGTAGATCAAAATTAATAACTTCA AAAGCTCTTGCTGAATTTTATAAGTCACATAAGAAAATTCTTTACCCAAT AAAAGAGGATCTACCCGGACAGCTTTGACGATTCACGTCTAGTTTTTGGA CAAATATCAAATAAGCTTTTGATCCGCATAACGATCCGCTctagtaaaac aaaaaaaatcacacccAAATCAAACACAAATCATAGGCCATGGTCAGTGG ATTGAAGctttagaaataaaaattataaaaaaggtCTTTGATTGATTGAG CATAAATGATGCAtaatttggggaaattcccaaacTTCTTAATTTTCTGA CTGCAAAAACACGTCCATAATCTTCTGATGTACAAAAGTTAGAAAAAGCT CCATCACGTGGTATATAtatcttttgattttatttgcaGACCCCGAAAAT TCGTTATTTTTCACCTTCAGAATTTTCCCTGGAAATTATacattttgata caaaatgaaGTGTTATGGAAGGAGGGTGGCCATGGCCTTTTACATTCGCT GCATCTCCTTTTAGTTCAGAATGTAATGCGTGCTGTTATGAGATTAACGT TtttccagctggcacacagcaTTATTTTAACGGTTATCAACAGACattct acatgttttttttacaagcataacgcttataagcatatgaaggctcagat ttgcagaattcctacaCATAACATAATCATATATGTCATcctggaatatt tttcaagttgtcattttttatttgcttaaaaaggtttggtagaggtcaag taaaaaaagacattccacggctagctacattccactgctcccaaaatctg aacaaatttttacaaaatttctgaaatttcaccaaaaacttggcatgatt cataagcatataataagcataagttatgcctggatgctttaagaacttaa gcataatacacgagcctgaccaaggggcatacactttcttataaaaaaaa catgtacttggTTAATTTGCATAGATCAAAATGCATTTGCATGTTGATTT GATGTTGTTGTGCCAGCTTGGTTGACAATtctaaaattctttcttttttt gaatcCATTTTTTAGAGAGAGATGGCCTGGAATCAAAAAGGAGAAATATC AAGGAGAAAGATGAACAAATATACTGCAATTTTTGCTTTTGTGGGAGGAT TCGTTTTAGTGTTTGCTATTTGGAACATCCAATATGTTTATAATTCATCT TCGACAAAGGAGCTGACAACTTTAACTGAGGAACGAATGCAGAAGATTCA AAATGAACAAATTCTAAGAATCAAAGATCTTTTATTTCCTGATAAAggta tatagtttgttcttttaccCCGCATACAATACCCAGAGAGCAATTTGCAT catttgattttactgatggacgtgatgTCTGTCATGATGCACGTGCTTTC GTTAGCGCTATCATACTTTAAGGGAAATAATTTTCAcggaaagaaatttt cgcggaatttaattttgcggctcacagctcaaaattcggaAGTTTCGCGG AATTCAATTTTGCGGTTGAGaggaatttttgtttaaaatatggcTTATTT TGCCGCCTCAAAACACCAATTGTataggtgattttttaaatcatgagaat attcttgttttgcggaatttaattcaTTCcggcgaaaatttcttccctta aggttaTAAAAAGTGTTACTTCGGTAACTGGGTTTGATTTTGCCCTCAAT GATAATTCTACACGATATAATCTTATAAGTTGTTAAGGGGGTctgagttt tgaaaaaatcaagagGTAAGATAATATACCACGTGTGTCTTTTACTTCTC CACGAGTCCTAAAAGTAATAATAGAATTTTTTGGGGAAGAAAAGGGTACT TTGAAAAGTCTGGAAGGACCAAATAATTACTCTCCCATAGAAAAAAACAG GACTGTTAGTCAACAATGAATTAAATTGCGTACGTCTAAACTACGTGCTT GTGGGTTGAACGAAATCTCCAGAGATGATATCATTGTGAAATAGTATTGA CCGTATTCTCGCGCCTTTCTGACATTTGCTATATCATAAGTATATGACGA AAGGCTATCGAGTAGTCCTACTCGATAGCTTCGATTCGCTGGAGTTCGGT GGATATTCGCTGGAGTTCGGTATTCGGGATTCGGGATTCGGGATTCAAAA TCGGGATTCGAGAAACGTCAATAAAAATTTACTAACTAATgctattgact tcaaataaaaaacggatgatAGACTTTATTATAAGGattaaaaatttcga aaaagaattcCAAAAAAGGGCGTGGTAATTTCGTTATTTAGGGAAATTTC TATTTCgatatttagaaatttttcaacaGTGGAACTTTGAAATGCTCTCC AGGCTTGGGAAATTACTCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNGAGCGTATAGAGAGGgacgccaa aaacaaaaaatctttaaaaagggcgccatatttgccttggccaccccaga gaaattttcccaccacgccactgattGAGAAGTTGAATGAAAGATATGGC ATCTTTAAGTCAAATTTTGGGGGCCCTTGAATTAGCATAGATAGAATTGT AAATTCTAAAGATGGGTAATAGCTAAAACCTGTGGAATTCTTTTGCTACC AACTTAACTTCATAGTTTGCAACAGAAAATCAACTTAATATACAATAATA TTTGCTTAATCAGCAAAATCGGGAAAAATTTATCGTTTCCATGGAAAATA TAagagaaaaataactttaaagccTCATATCTTTGGATTGAGCcaagttt taattttgatttttttacagCGTAATCCATACCCAAATAGGattatttcc aaaagaaaatgNTATTGAGCCAAGTTTTAATTCTGATTAtttttacagcg taagccataCCCAAATAGGattatttccaaaagaaaatggttttcaaaaa ttcaatcaaaacgtcatttcatttaaacagtcattttcaaaatttcaaaa ttttcggttTGGACTTTGCATAAAGAGTGGCCGAACTCTTTTACTCTTAG AGAGACCATGTTACATACTTCACATATGGTATTGGAATAGAAAACAatgt ttatttttaataaaacttttcaCTCTACATTTGTGTATTGAGCACATCGT GAAGAGACCATTTTCACAATATTACTTCATATGTATACTTACttcaggtg tacaaactttcacgagctgaaactttcgcgagatcgaaaatttacgacat ttacttttgcgaatttgaggaaaaagtaTTTTTCGCGAGCACTAACTTTC ACGAAATGgatgataaaaagaaaattttcacacGAAATACGACTTGCAAG TGACAAATGCATTTGAATTTAATTATAACTGGTATTCTATCACTTTAATG AGGGTTTTAAGGCATACAAATGCTATAATTACtagcttttattttgattt caagcTTTAGAGATTTACCACAGGCAaaaatcgcaaaagtttctgctcgc gaaaagTTGAACGTCTAAAGTATTCATCTGTTAGCTTACACCCGTTTTTG GTTTGGAGTCATTTGAGTAATTTCCCAAAGCTGAAGAGCAAGTCAAAGTT GTACCATTGAAAACGGTCGAAATAACTAATTTAGGTAGTTTCcctaaaac acacaaaaactACGCCCTCTCTAGGCATGCCACTTATTCACCATTGCTTA TATTCATTTaagcttgcatccgtttttggTTTAGGGTCTTTAAAGTCATT TCCCAAGTTTCTAGAACActccaaagttgaaaaatgCTATTTTGAATCCC GaaatggggaatttccctaaaacaCGAAAAAAACACGCCCATTTGAAGTT TCTTAACTGGTGGGCATTGTTTCTATACCTGTcagcttgcatccgttttt ggTTTGGAGTCAATTGAGCAATTTCCCTAGCCAGGAGAGCATTTCAAAGT TTGCCTGCTGAAAATGGTTTAAACGGTGAAAATCAAGActttagggaatt tccctaaaacaCGCAAAAACTACGCCCTTTCTAGGCATGCCATTTATTCA CCATTGTTTATATTCATGTAAGCTTGCATCCATTTTTGGGTTGGGGTCTT TAAAGTCATTTCCCAAGTTTTTAGAACACTCCAAAGTTGAAAAATCAGCT ATTTTGAATCCCGaaatggggaatttccctaaaacaTGGAAAAAACCACG CCCTTTTGAAGTTACTTAATTGGTGGACATTGTTTCTATACCTGTcagct tgcatccgtttttggTTTGGAGTCAATTGAGCAATTTCCCGAGCCTGGAG AGCATTTCAAAGTTCCACTGTTGAAAAATTGCTGAATGTcgaaacaggga atttccctaaataaCGATATAATCACgcccttttttggatttttttttac aaatttttaattcttataataaagtctgtcatccgttttttatttgaagt caatagcATTAGTCAGTAAATTTTTATTGACATTTTTCGAATCCCGATTT TGAATCTCAGGCCCTTTAAGTGGAtttcttttcggaaaaaaagttgattc taCTAACCATTTATGAAACATcattactctttcaaaaaaaattattttta agaatttctttcGACTTCATGACGGGAAAAGATAGAATTTTAATATGGTT ACAATGATACCCATCAAGTCGGTGAAATATTTACATAGAATTTCATTAAT GTggagaaaatcgctaaaaaatacACTAgctataattttcattaaagtgc caccgcagaagaacgatcaaataaaTGTGTCCATCTCATAGTTATCTTCT TATAGAGATAAGGTAAagttatttatcttttttttgtcatctcttttatt accaaaataattggcaccggaggaagcctaaagcttctgaggatggcatt catagcttcacgcataaagcataaggaagttgggcaaacatctcataatt ttgcgggtttttcagtattttatttctgcttaacggtagcattcctatct tacggtctctctattgttttatcatcatcaaaaagacttttctggagtta ttttgatctgattactcattttgaaatgtcagtttgtctttttcttatNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACAACAATCAACAAACCC AAACGAATCAAACCAACAATTTCAACTACCCAATTATATATGGCACAATA ATCACTTCATTTCTATATACCAAAATAAAGTTACCACCGCTATTCAACAA CTAGAAGCTACAAATGACGTTGAAACAGACTTAACAAACTTAAATGAACT CCTCTTACAGTGTGCTCCTCTGACAGCTATGCCAACCTGAAAAACAATAA GTTTCATTTCCAACCAAAGAAATGGTGGAACAAAGACCTTGCCGAGGCAA AAAACAAATTGAATCAAATGTTCAATCCATGGAGAGATCAAGGATTCCCC CGCTCGCAGGACAATGTGACATACCAGAGATACATCTTCGCCAGAAAAAG ATTTCGGAATATGGTAAAGCGCGCAAAAAATCAAGCCAACGTTGACCATT TCATAAATGTAgacaatcttaaaaacctggATCCAAGATCTTACTGGAAG AGCATCAAAGTAAATAAAGCTTCAACACAAAAACTATTCACTATCAACGG AAAGACCACAAGCTCAGAAATCACAACAGAATTCCACaatcactttgaaa atcttttgaacACACCACGAACTCAAAATATCGATAACACAAAATCGAGA ACCAGACTCCAGGAACTACTAACTACCTTAGAAAGATCTACTTCCACTGA CTTTTACATCTCGGAATGTGACGTTAAACAAGCTATACTTTCtctatcaa aaaataaaactcgGGATCCTTTCAATCTTAGAGCTGAACACTACATCCAT GCTTCAAATGACGTGTTTATCCAACATATTACAGAATTAATCAATAAACT CTTTCAAACTTCCACAATTCCATCGGCGCTGTGTACATCCCTAATCATCC CTCTTGtgaaaaaccacaaaaaacCTCTTTCAGATCCCAACAACTACCGT GGCATTAGCATCATCCCAATTATAACTAAGATTGCTGAACTAGTCATAAT AAAGAAATGTCCAAACATAAAGAACAATAATCCATCTCAGTTCGGCTTCG TTAACGGGTCTTCAACAATCCACGCAGAAATCCTCATCCAAGATACGATC CATTATTACAATAAGAATGATTCTCCTGTGTACGTTTGTAGTCTTGATGC AGAGAAAGCTTTTGACTGTTGCAATTGGCAGGTgttatttgaaaagttat cAGTCAGAGAAGACATCCCAAATGAAATcctcaaatttttgataaaactc TACTTGAACAGTGAATCAGCAATCATGTACAACGGTCataaaacaaaatc tttcaatctcAGTCAAGGAGTTAGGCAGGGCTCACTACTCTCCCCCTACC TGTATAACTTTTACACAGAAGATCTGCTTGCAAAgatcaaagatttaaaa attggAGCAACCTTGGGAAATGGACTGAATACTTCAATAATTGCATATGC TGATGACCTAATTCTGCTCAGCCCAACGCTAAGATCCCTTCAAGTTATGA TAGACAAATGCATTGAGTACGGCCAGGAACATGGGCTCAAATTCAACCAT TCGAAAACACAATTCTGCATTTCGGGAAAGTGTCAACTACCTAAACCCAC CTTAACTATGTACAACACACAAATCCTTCCGAAACAACAACTCGAACACT TGGGTCTTAGATGGAAAACCGAAAGAAACTTAACCATCACAAAGATGTAC GTTTATCTGAACTTTGGGCCGTTACTTCCTCCTTGATCTCAGCAGGAATC AGAAACACTCACCCAAACACCATTGTACATGTCTTCAACACCGTTGTTAT ACCAAAGCTGCTCTACGGATTAGAATTTGTTAAACTGTCCAACTCCGACA TCGCACAACTAGAAGCCCAAGCTAGGTCAAGCCTCAAAGCACTTATGGGA GTCTCCAAGCACAGTCGAAATCTTATCAGTCAGATCTACAAAATACCAGA CACTTCATCGTTAATCAAGAAACGTGCAATGCTACTACCACATCAACTAC TCAAATGCAACATGTTACGAAAATATCTTCTACACCTAGCAACCCTGGAT AGCGCTCAAAGATCCTACTCTTCAATCGATACAGTCTTTCAATTGTATGC TCAAAATGACTTGTCCATTGTCTCTACCCTAATAGGAAACAANNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNGTCCTGTTTCTGCCTGTTTTGTCCTATGTTTACATTTTC GGGGAATCTCCTGCTGAATATTAGTATCTCAATCGGTTAGGTTctacttt gtttttgtttaccaAGAGGGAGATTCCTATAGTCCGGACGGAACGTAATC TCGGGAGAAACAACCCTCGCCTGCGGATAGGCCCCGTAACGGAGTGTTGT TTCTTCCCAGAGCCCGCTTTTCGCCCTTAGTGGTCTACTGATCACTATTC TGTTCGCACGCACtttaaaaaacgaaaacttattttttttctagataTAT TTAggatttttctcttctttttttttaaatgtaaatatttACCTTCAGAG ACTTATTATATATACTGATATATACCAGATTATTGGTGGCAAAAgagaac aagaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagtagagCGACA AGTTTTTGaacagataaaaatttctaatttgcgttgctcagagcggttaa taactacttgtggtttaaatagggaatttcccaacaaaaaaggaaattcc attaattcgactccctgaggtaataaaaaagacatatagagctttgtaaa tgggtaatcagatcaaaaaaaatccggaaaagtgtttttaatgatgataa aacaatagtaatacagtcaagctaagaatgttaccggtacaccatttaac cggaactaaaatactgaaaaacgcgcgcaaaattatgagatgtttgccca acttccttatgcgtgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNgtttgcccaacttccttttgcgtgaagctatgaatgcca tcctcggaagctttaggcttcctgcggtggcaataaaATGGCGCCTCCGC GGGATACAGCGTTGAGCTTTTCACCTCAACTTTTGTACACGAGTAGTTCA AGCAGGTGGCTAGTCGAAACTACCTCAATAGTGAAAGATATATTTATAGT CTTTTCTCTATGCACGAAAGAATTACCAAAACTTCAGTATTTTCACTTGA GTTCAAATTTCAATCCGTATTTTAACTATATTGCACAATGAAACCCTCCA CTATAGAGTTACTTTCGATATGCCGACTCTCCTCCCTAGTGccttggaaa aagaaaatcacgaATTTCCAATTTTGTATCGCGCGGAAGGTAGGAAAAAC ATAATTTCTCCaagaaaatactcaaaaattggAAGGTACAGGCCAATGGG TAAACCTGTTTGTTAAAAATGGTTGATTGACAAGTAGATTCTTACGCAAT AATCcagtaatcaaatttaaaaggaaGACGCACTTCTTTCGTTCTTTTGA GCATAAACCAATTAGCTctctcttatttttttttttaaagaatgtttaca agaataagatttcgtttattaaataatcttttaaaagtgttgATTGATGC GTGAGGCCTTTTCATTGAACATATAACTCTGTCGGTGTTTTTTTAGACTG TACCAGAGAGATCTTAGAAAAGAGAGAAAAGAGAATTTTCGTTTCAGAAC CACTTAAAGGGCCTGAGATCCCGAATACCGAATCCCGAATACCGAACTCC AGCGAATCTACCCTACCATTCTGctgtcattttcaaaaaaatacgaTCAA AGAATTTGGTTAGCTGAAATTGAGAAACTGCCTCCATGGTTTATGTAGTG CTCAGTGATAGCGCCAGCAAAACCATCATAAAGGCTTGGATACACTGTTA CGGAAATTTGGTTtaagcaaaatttacatttatttacaCATTCTTCTTAG GTAATACAACTTCGATACCTACAACAAAATCGACCGCCCAAACGCCTACA TCAGAGAGCGTCATCGTTAAACAGCTGAATGAAATACGAAATAATATGAA AGATTTTGacgataaaattaaaaaattggcTGATTGGGAAAGCTATCGCG TACAgcgtgaaaaattaaaaacattagtCCATGTTCAGAATTCCAAAGAA AGCGAGAATAAGAAATACAGTATGTTTCGTCCTCATGTTTTAGTTGATAA AGTCACTTTGGATTGCAAAGAACACTATAAAGTTATCGTTCTGGTAACCT CATTTGCGAAGCACTTCGATCGCCGCCAATGGATTCGAAAAGCATGGGGT AACCAAACATTCTGGAACGAAACTCATGAACATtggcaagtgatttttaa catAGGGGCTGTGCAACGGGATATGAAGGATACTTATGATAAATTAATGG AAGAATCTCAGAAATATGGAGATATGTTGATTCTAGACATCCAAGAAGAT TTTCATAAACTTTCTCAAAAAGTAATGACGGCTTTATTCTGGGTTTAcac taaatttaatttcgaGTTTGTTTTCAAAAGTGATGATGATGTCTTTATCC ATATGCAGCGCTtgttgacaaaattgaacggaacTTGGTCGAAGGAGAAT TTTGTTGGTAACGCAATGTTTGGACAGCCTCCAGAACGGAATAAAGGACG TTATGGTGTATCCCTTGAAGAATGGcctaagaaattttttgatcctTATT GCAGTGGAGGTGGTTACATCTTATCGCACTATATAATTGAGCATATGATT CCCTATTTTAATTGGGAAACCCCTTTAAAGATAGATGACGCGTATATTGG ACATTTGGTGAACCTTGCAGGTGGAAAAGTGAAACACGAATTTAAAAGTT TCCTTATGTATAACGTTAAACTAGAATACTCAGCAGATTTGGTTGTCACT CATCCAGTTAAATTTCCACCGTTTCGTGAATTTCTAGAAGTTAAAGCCGG TCTCGAACTTGGACGTATCAAAACTCATGAGATGCAAAATTTCACTCGCT TAAGAGATTATCAAGATCACAAGAAAAAACTTCAAGCTTTGTTAAGTACT actaaaaaaactttgactAAATCTGTAGCTCTGGATGTAAAAAGGTCAAC ACCTACTACAGCCAGAACTTTAAAGGACGTTGGCCTTAATGTTACCACGG CTTCCCCAAAGTAGCAGTTGAATAGTAGGCCTACAAAATCCACAAAAAGT TGTCGCAACTCTAGAAGCTTCAgataataccttatcggggaaaacttcgt cggggaaaattttcgtcggtgaaaattttcgtcggggaaaaattcgtcat aTGTTgatagttggtaaacgcattaaggccggggaaaattttcgtc

Coding sequence (CDS) from alignment at sc0000044:756715..769560+

>TCONS_00004374 ID=TCONS_00004374|Name=TCONS_00004374|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at sc0000044:756715..769560+ (Clytia hemisphaerica)
ATGGCCTGGAATCAAAAAGGAGAAATATCAAGGAGAAAGATGAACAAATA
TACTGCAATTTTTGCTTTTGTGGGAGGATTCGTTTTAGTGTTTGCTATTT
GGAACATCCAATATGTTTATAATTCATCTTCGACAAAGGAGCTGACAACT
TTAACTGAGGAACGAATGCAGAAGATTCAAAATGAACAAATTCTAAGAAT
CAAAGATCTTTTATTTCCTGATAAAgGTAATACAACTTCGATACCTACAA
CAAAATCGACCGCCCAAACGCCTACATCAGAGAGCGTCATCGTTAAACAG
CTGAATGAAATACGAAATAATATGAAAGATTTTGacgataaaattaaaaa
attggcTGATTGGGAAAGCTATCGCGTACAgcgtgaaaaattaaaaacat
tagtCCATGTTCAGAATTCCAAAGAAAGCGAGAATAAGAAATACAGTATG
TTTCGTCCTCATGTTTTAGTTGATAAAGTCACTTTGGATTGCAAAGAACA
CTATAAAGTTATCGTTCTGGTAACCTCATTTGCGAAGCACTTCGATCGCC
GCCAATGGATTCGAAAAGCATGGGGTAACCAAACATTCTGGAACGAAACT
CATGAACATtggcaagtgatttttaacatAGGGGCTGTGCAACGGGATAT
GAAGGATACTTATGATAAATTAATGGAAGAATCTCAGAAATATGGAGATA
TGTTGATTCTAGACATCCAAGAAGATTTTCATAAACTTTCTCAAAAAGTA
ATGACGGCTTTATTCTGGGTTTAcactaaatttaatttcgaGTTTGTTTT
CAAAAGTGATGATGATGTCTTTATCCATATGCAGCGCTtgttgacaaaat
tgaacggaacTTGGTCGAAGGAGAATTTTGTTGGTAACGCAATGTTTGGA
CAGCCTCCAGAACGGAATAAAGGACGTTATGGTGTATCCCTTGAAGAATG
GcctaagaaattttttgatcctTATTGCAGTGGAGGTGGTTACATCTTAT
CGCACTATATAATTGAGCATATGATTCCCTATTTTAATTGGGAAACCCCT
TTAAAGATAGATGACGCGTATATTGGACATTTGGTGAACCTTGCAGGTGG
AAAAGTGAAACACGAATTTAAAAGTTTCCTTATGTATAACGTTAAACTAG
AATACTCAGCAGATTTGGTTGTCACTCATCCAGTTAAATTTCCACCGTTT
CGTGAATTTCTAGAAGTTAAAGCCGGTCTCGAACTTGGACGTATCAAAAC
TCATGAGATGCAAAATTTCACTCGCTTAAGAGATTATCAAGATCACAAGA
AAAAACTTCAAGCTTTGTTAAGTACTactaaaaaaactttgactAAATCT
GTAGCTCTGGATGTAAAAAGGTCAACACCTACTACAGCCAGAACTTTAAA
GGACGTTGGCCTTAATGTTACCACGGCTTCCCCAAAGTAGATGGCCTGGA
ATCAAAAAGGAGAAATATCAAGGAGAAAGATGAACAAATATACTGCAATT
TTTGCTTTTGTGGGAGGATTCGTTTTAGTGTTTGCTATTTGGAACATCCA
ATATGTTTATAATTCATCTTCGACAAAGGAGCTGACAACTTTAACTGAGG
AACGAATGCAGAAGATTCAAAATGAACAAATTCTAAGAATCAAAGATCTT
TTATTTCCTGATAAAgGTAATACAACTTCGATACCTACAACAAAATCGAC
CGCCCAAACGCCTACATCAGAGAGCGTCATCGTTAAACAGCTGAATGAAA
TACGAAATAATATGAAAGATTTTGacgataaaattaaaaaattggcTGAT
TGGGAAAGCTATCGCGTACAgcgtgaaaaattaaaaacattagtCCATGT
TCAGAATTCCAAAGAAAGCGAGAATAAGAAATACAGTATGTTTCGTCCTC
ATGTTTTAGTTGATAAAGTCACTTTGGATTGCAAAGAACACTATAAAGTT
ATCGTTCTGGTAACCTCATTTGCGAAGCACTTCGATCGCCGCCAATGGAT
TCGAAAAGCATGGGGTAACCAAACATTCTGGAACGAAACTCATGAACATt
ggcaagtgatttttaacatAGGGGCTGTGCAACGGGATATGAAGGATACT
TATGATAAATTAATGGAAGAATCTCAGAAATATGGAGATATGTTGATTCT
AGACATCCAAGAAGATTTTCATAAACTTTCTCAAAAAGTAATGACGGCTT
TATTCTGGGTTTAcactaaatttaatttcgaGTTTGTTTTCAAAAGTGAT
GATGATGTCTTTATCCATATGCAGCGCTtgttgacaaaattgaacggaac
TTGGTCGAAGGAGAATTTTGTTGGTAACGCAATGTTTGGACAGCCTCCAG
AACGGAATAAAGGACGTTATGGTGTATCCCTTGAAGAATGGcctaagaaa
ttttttgatcctTATTGCAGTGGAGGTGGTTACATCTTATCGCACTATAT
AATTGAGCATATGATTCCCTATTTTAATTGGGAAACCCCTTTAAAGATAG
ATGACGCGTATATTGGACATTTGGTGAACCTTGCAGGTGGAAAAGTGAAA
CACGAATTTAAAAGTTTCCTTATGTATAACGTTAAACTAGAATACTCAGC
AGATTTGGTTGTCACTCATCCAGTTAAATTTCCACCGTTTCGTGAATTTC
TAGAAGTTAAAGCCGGTCTCGAACTTGGACGTATCAAAACTCATGAGATG
CAAAATTTCACTCGCTTAAGAGATTATCAAGATCACAAGAAAAAACTTCA
AGCTTTGTTAAGTACTactaaaaaaactttgactAAATCTGTAGCTCTGG
ATGTAAAAAGGTCAACACCTACTACAGCCAGAACTTTAAAGGACGTTGGC
CTTAATGTTACCACGGCTTCCCCAAAGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002448XLOC_002448Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004374-proteinTCONS_00004374-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004374-exon-sc0000044-1491911889:756715..756937TCONS_00004374-exon-sc0000044-1491911889:756715..756937Clytia hemisphaericaexon
TCONS_00004374-exon-sc0000044-1510915933:756715..756937TCONS_00004374-exon-sc0000044-1510915933:756715..756937Clytia hemisphaericaexon
TCONS_00004374-exon-sc0000044-1575043694:756715..756937TCONS_00004374-exon-sc0000044-1575043694:756715..756937Clytia hemisphaericaexon
TCONS_00004374-exon-sc0000044-1491911889:758030..758261TCONS_00004374-exon-sc0000044-1491911889:758030..758261Clytia hemisphaericaexon
TCONS_00004374-exon-sc0000044-1510915933:758030..758261TCONS_00004374-exon-sc0000044-1510915933:758030..758261Clytia hemisphaericaexon
TCONS_00004374-exon-sc0000044-1575043694:758030..758261TCONS_00004374-exon-sc0000044-1575043694:758030..758261Clytia hemisphaericaexon
TCONS_00004374-exon-sc0000044-1491911889:768165..769560TCONS_00004374-exon-sc0000044-1491911889:768165..769560Clytia hemisphaericaexon
TCONS_00004374-exon-sc0000044-1510915933:768165..769560TCONS_00004374-exon-sc0000044-1510915933:768165..769560Clytia hemisphaericaexon
TCONS_00004374-exon-sc0000044-1575043694:768165..769560TCONS_00004374-exon-sc0000044-1575043694:768165..769560Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:756715..769560 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0708142 0.271666 0.179346 0.12601 0.666501 0.45785 0.354622 0.670719 0.209893 0.154698 0 0.214852 9.3136 6.23563 0.135207 0.110304 0.126699 0.295517 18.2231 17.3826 0.160392 0.211104 0.0867786 0.155627 0.677798 0.672926 0.0668277 0.139788 0.113457 0.114849
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002659Glyco_trans_31
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0008378galactosyltransferase activity
Vocabulary: Biological Process
TermDefinition
GO:0006486protein glycosylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006486 protein glycosylation
cellular_component GO:0016020 membrane
molecular_function GO:0008378 galactosyltransferase activity
Blast
BLAST of TCONS_00004374 vs. Swiss-Prot (Human)
Match: B3GN2 (N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2 OS=Homo sapiens GN=B3GNT2 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 3.389e-20
Identity = 66/225 (29.33%), Postives = 112/225 (49.78%), Query Frame = 2
Query:  719 CKEHYKVIVLVTSFAKHFDRRQWIRKAWGNQTFWNETHEHWQVIFNIGAV--QRDMKDTYDKLMEESQKYGDMLILDIQEDFHKLSQKVMTALFWVYTKF-NFEFVFKSDDDVFIHMQRLLTKLNG---TWSKENFVGNAMFGQPPERNKGRYGVSLEEWPKKFFDPYCSGGGYILSHYIIEHMIPYFNWETPLKIDDAYIGHLVNLAGGKVKHEFKSFLMYNVK 1375
            C +   +++ + S   HF RRQ IR++WG ++  N  ++    +F +G    + +  D  D L  ES+K+ D+L+ + ++ F  LS K +  L WV T   + EFVFK DDDVF++   +L  LN    T +K+ F+G+ +    P R+K       E      + PY  GGG++ S ++   +    +      IDD Y G  +    G V  + K F  ++++
Sbjct:  138 CAKKPFLLLAIKSLTPHFARRQAIRESWGQES--NAGNQTVVRVFLLGQTPPEDNHPDLSDMLKFESEKHQDILMWNYRDTFFNLSLKEVLFLRWVSTSCPDTEFVFKGDDDVFVNTHHILNYLNSLSKTKAKDLFIGDVIHNAGPHRDKKLKYYIPEVVYSGLYPPYAGGGGFLYSGHLALRLYHITDQVHLYPIDDVYTGMCLQKL-GLVPEKHKGFRTFDIE 359          
The following BLAST results are available for this feature:
BLAST of TCONS_00004374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B3GN23.389e-2029.33N-acetyllactosaminide beta-1,3-N-acetylglucosaminy... [more]
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