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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004370 ID=TCONS_00004370|Name=TCONS_00004370|organism=Clytia hemisphaerica|type=transcript|length=1407bp
CAAAGATAGTGTtagcttctgctcatcctcttacgaaaaagttttttata
taaggaattAAGCTTATATAAGGTCTGCAAATTAGACTAAGGTACTAGAT
GCTACTATGCGCAAACCAGTGCATACCATCAAAAAGACTTGTTGATTGTA
TATTCAACTGAACAAATAAAATGGGAAGCGACAAGGATGCAAAAAAGGAG
CCAACTGAAGCACAAAAACGTGTCGCGAAAgcgaagaaagaaaaacaaat
gaaaggTTTCATCGCCCAATGTGTTCAACAAAACCAAAACGTGGAGGACG
AGGAGAGACGTATCCTGTCAATATTACGTCAAGGTGGACTCGATTATCAA
CCGAATCCTGATAACTTACACGAAGcggcgaaaaaaggactggatcATCA
AGTCATTGCGATGTTGAAGAAAGGATTTGGCGTTGATACGTTAGATAAAG
ACGGGAATACGCCGTTGTTTTACGCAAGCGAAAATGACCGTTTCCAAACA
GCCGTTATCTTGCTTGATTATAAAGCTAACGTAAACCATAAGTCAAAACA
TGGCTTCACGCCGTTAATGTACGCCGCATGGAAAGGCCACGTCGATTTAG
TATCATTACTTATAAAACACGGCGCTGACGTTAAAGCCGTCAACGCAAAC
AACGATACGGCGCTACATTTCGCCGCTTTATGTGGGTTTTCTATGGTAAG
CTTGATTTTACGTCAAGCGGGAGCTGAGACAGACCCTAAGAACAGTAAAA
AGAAGAAACCATTGGATCAAGGAGAAACATTTGTTAAAGAACTTGAATTA
ACTCTGACAGAAAAAATCCCAAAGGACAGTTCGATTGAATTTCAAGAATC
GAAAAGTCTTTTTGGTATCAGAAGGGTAGCACGGGAAGTAGCAAAATATG
CTGACTcatgaatgaaaaaaactttatagATTTTTTGATGCTACAAACTA
CTGTAAACTTCTTGTATGCATTGTACTACTGtagtatattttattttcac
ccaatttcttgttaatatttatttttaaaatattttcgtcggaatgcggg
tgaaggaaaaatttttttttttctatttttgataacttaagatcattgaa
atgaaattttaaagataactttaatgtacaaacagtatgaagtaagccct
gaatactaatacTAATAAAGACTATTGAACCCTAACGATCCTTTTCCCGA
AGCACCCCCTGCCCGAAGTTACGGATCGCTTTAATAAAGATTAAAGTTTA
AGATTAGAAGAAATTAAGCCGTCAATCCGTCCAATCGTCAAGACATTCTT
AACTTAAAGGACAATAACATAGTGAACATTCtttaagtacacgtttttta
taagaacatccaaaatttctgaagCCTTTAGATGTCCTTAACTTTTccag
tttcaag Run BLAST on NCBI transcript from alignment at sc0000044:542228..543745+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004370 ID=TCONS_00004370|Name=TCONS_00004370|organism=Clytia hemisphaerica|type=transcript|length=1518bp|location=Sequence derived from alignment at sc0000044:542228..543745+ (Clytia hemisphaerica)
CAAAGATAGTGTtagcttctgctcatcctcttacgaaaaagttttttata
taaggaattAAGCTTATATAAGGTCTGCAAATTAGACTAAGGTACTAGAT
GCTACTATGCGCAAACCAGTGCATACCATCAAAAAGACTTGTTGATTGTA
TATTCAACTGAACAAGTATGTATATGCATACAGTTAGTATATTGAAAATT
AATGTAAATGTAAATTCATGTTTTACACCATATTCATGTATACCGTagat
aattttatttttcgtttgATTTCCAGATAAAATGGGAAGCGACAAGGATG
CAAAAAAGGAGCCAACTGAAGCACAAAAACGTGTCGCGAAAgcgaagaaa
gaaaaacaaatgaaaggTTTCATCGCCCAATGTGTTCAACAAAACCAAAA
CGTGGAGGACGAGGAGAGACGTATCCTGTCAATATTACGTCAAGGTGGAC
TCGATTATCAACCGAATCCTGATAACTTACACGAAGcggcgaaaaaagga
ctggatcATCAAGTCATTGCGATGTTGAAGAAAGGATTTGGCGTTGATAC
GTTAGATAAAGACGGGAATACGCCGTTGTTTTACGCAAGCGAAAATGACC
GTTTCCAAACAGCCGTTATCTTGCTTGATTATAAAGCTAACGTAAACCAT
AAGTCAAAACATGGCTTCACGCCGTTAATGTACGCCGCATGGAAAGGCCA
CGTCGATTTAGTATCATTACTTATAAAACACGGCGCTGACGTTAAAGCCG
TCAACGCAAACAACGATACGGCGCTACATTTCGCCGCTTTATGTGGGTTT
TCTATGGTAAGCTTGATTTTACGTCAAGCGGGAGCTGAGACAGACCCTAA
GAACAGTAAAAAGAAGAAACCATTGGATCAAGGAGAAACATTTGTTAAAG
AACTTGAATTAACTCTGACAGAAAAAATCCCAAAGGACAGTTCGATTGAA
TTTCAAGAATCGAAAAGTCTTTTTGGTATCAGAAGGGTAGCACGGGAAGT
AGCAAAATATGCTGACTcatgaatgaaaaaaactttatagATTTTTTGAT
GCTACAAACTACTGTAAACTTCTTGTATGCATTGTACTACTGtagtatat
tttattttcacccaatttcttgttaatatttatttttaaaatattttcgt
cggaatgcgggtgaaggaaaaatttttttttttctatttttgataactta
agatcattgaaatgaaattttaaagataactttaatgtacaaacagtatg
aagtaagccctgaatactaatacTAATAAAGACTATTGAACCCTAACGAT
CCTTTTCCCGAAGCACCCCCTGCCCGAAGTTACGGATCGCTTTAATAAAG
ATTAAAGTTTAAGATTAGAAGAAATTAAGCCGTCAATCCGTCCAATCGTC
AAGACATTCTTAACTTAAAGGACAATAACATAGTGAACATTCtttaagta
cacgttttttataagaacatccaaaatttctgaagCCTTTAGATGTCCTT
AACTTTTccagtttcaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004370-exon-sc0000044-1491911889:542228..542392 | TCONS_00004370-exon-sc0000044-1491911889:542228..542392 | Clytia hemisphaerica | exon |
| TCONS_00004370-exon-sc0000044-1510915933:542228..542392 | TCONS_00004370-exon-sc0000044-1510915933:542228..542392 | Clytia hemisphaerica | exon |
| TCONS_00004370-exon-sc0000044-1575043694:542228..542392 | TCONS_00004370-exon-sc0000044-1575043694:542228..542392 | Clytia hemisphaerica | exon |
| TCONS_00004370-exon-sc0000044-1491911889:542504..543745 | TCONS_00004370-exon-sc0000044-1491911889:542504..543745 | Clytia hemisphaerica | exon |
| TCONS_00004370-exon-sc0000044-1510915933:542504..543745 | TCONS_00004370-exon-sc0000044-1510915933:542504..543745 | Clytia hemisphaerica | exon |
| TCONS_00004370-exon-sc0000044-1575043694:542504..543745 | TCONS_00004370-exon-sc0000044-1575043694:542504..543745 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000044 | supercontig | sc0000044:542228..543745 + |
Blast
BLAST of TCONS_00004370 vs. Swiss-Prot (Human)
Match: ANR27 (Ankyrin repeat domain-containing protein 27 OS=Homo sapiens GN=ANKRD27 PE=1 SV=2) HSP 1 Score: 80.4925 bits (197), Expect = 6.690e-16 Identity = 52/145 (35.86%), Postives = 70/145 (48.28%), Query Frame = 3
Query: 366 LHEAAKKGLDHQVIAMLKKGFGVDTLDKDGNTPLFYASENDRFQTAVILLDYKANVNHKSKHGFTPLMYAAWKGHVDLVSLLIKHGADVKAVNANNDTALHFAALCGFSMVSLILRQAGAETDPKNSKKKKPLDQGETFVKELEL 800
LH AA G + +LK G + D PL A + FQ LLD A N K G TPL+YA GH +LV+LL++HGA + A N +TALH A + V +L GA N +++ +D E K +EL
Sbjct: 748 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMEL 892
The following BLAST results are available for this feature:
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