TCONS_00004365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004365
Unique NameTCONS_00004365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004365 ID=TCONS_00004365|Name=TCONS_00004365|organism=Clytia hemisphaerica|type=transcript|length=469bp
ttaagaacattttaaggcattGTGGACTCTAACACATCCGATTTATTAGA
AAATTGTAGAAAATATTAACAGTGTGGtaaagataagaacatttttaggc
ttataaaaactccaaaagttaagaactcttgaaggctttaaaaactgtag
atgttctaataaaaaaatggtGCAAAAGCTAAATATAGAGGATGACATGC
TATAAAAGACCACAACAGCATCATATAGTCATCATCATCGCATTTAATGA
CGACCAGTGAAACTTGTGAAtgattataatgaagctctcaATACTTTTAG
TTCTTTTCTTCGTGGCCTTTATCCATGCTGGTGGCGGTGATTGCGaATGT
GCAGACGGTATTGGTACATGTGATAAGAGATATCATTGTGTACCAGCTTC
TATAAATACTTGTAAAGTTACATGTGGAGTATGCAAGCCTACTATACCAG
tTTATCTCAGTACGTAACC
Run BLAST on NCBI

transcript from alignment at sc0000044:344909..350484+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004365 ID=TCONS_00004365|Name=TCONS_00004365|organism=Clytia hemisphaerica|type=transcript|length=5576bp|location=Sequence derived from alignment at sc0000044:344909..350484+ (Clytia hemisphaerica)
ttaagaacattttaaggcattGTGGACTCTAACACATCCGATTTATTAGA
AAATTGTAGAAAATATTAACAGTGTGGtaaagataagaacatttttaggc
ttataaaaactccaaaagttaagaactcttgaaggctttaaaaactgtag
atgttctaataaaaaaatggtGCAAAAGCTAAATATAGAGGATGACATGC
TATAAAAGACCACAACAGCATCATATAGTCATCATCATCGCATTTAATGA
CGACCAGTGAAACTTGTGAAtgattataatgaagctctcaATACTTTTAG
TTCTTTTCTTCGTGGCCTTTATCCATGCTGGTGGCGGTGATTGCGGTAAG
TTTAAATGAAATCTATGATAAGTCGTATTGACTAGCAATaactttcatta
aagtgccaccgcagcaaaacgaacacatggAGTTGAATTTGCTTTTAAAA
GGANAACTCGTACAAatggcaaaaaaagtgaaaagtaataattatgacgt
atgtgttgcggagcgctatatagcgcaccgcgctggatctaaaaatagat
tttatttttgacataatcattactctcgatgtgtttgtacgagttccaat
cccatcaacctttgcgttaatgtCTTTTGCACGTCAATTAcatcgtttga
caaaagatatataacagcttgcacgtatctttaattgagccgcattgaat
tatgggattgcaactcgtacaaatgtcaaaaaaagtgaaaagtaataatt
atgacgtatgtgtTGCGGAGCGCTATGGTATTAGTCCTacaataattttt
gttaagagcatagaggtataaagaaagacaggagatgaatttgtcggtaa
ttggtcgttaaagttttttgatttcttttatgtaataaatcaaaagaaat
tatacgctcgcccgatgaaatacgactttttagtagaactcaagtttgct
ttgaacattcttactatcagcatcgaagatttctagccttctaatatacg
agaataaaataaaatttagctccacgaaataagtttgcgttcaattttgg
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NNNNNNNNNNNNNNNNNNNNNcaaagtttacaggcccttttttaatccaa
atattttcttacaccaatgtcagaaacaatggatCTCGCCTCATctaatt
tcactgaaataagccaataagatttcacctatcaacaaaagagctcatta
aaaatgcacgatatatgagattatgagcatgcatacctgcgagcatggtt
acaatagcatacttctcctgtttctttatacctccatggaaagagtgacc
tctcatctgatctgagacaaaattcattcttcaaatgctaacaaatgtgt
caagggagtgatttacagttatagtttcaaaagtaaaaagcccattttgt
tttggcgtctacttagagtgacattcGTGCCTTgccttacacgctttttt
ataagaacaattttataaaaatacaatgctggactttggccaaaacctaa
gaacaaattaagaacagtctttACTTTTCGGTCACTTTAGGCTCCCTGCG
GGGGCAAGAACCCGATATTTTGAGTCCTATGAAAATAATCTGGCAGTCCC
TACAGCCAGGGGTTACTGCTATGTGCGGAACTAGTACTTCAAACCATGAC
CTTTAGAGACACTAGAAATTTTGACGatagaatgtcaattttttacCAAG
CACACAGCAGCCTTTAAAAAACTATTGGTCAAGAAGAAACTGATTAATGT
TTCCGAATAATGTAGTCGAATGTTTCTATGActctatacacgttttttta
agaaacacacttttaagaaacatatttaaaaactaagaaacatctaagaa
atgCTGNgcgagaaaagattatgccactGCTTTAGAATTATAcaatataa
tttaagttttatgataattattaggaataatcagcatactttatgcatga
atcgcgcatcgtgaatcgtaaatcgttagatcgtgcatcttaaattacac
caacccgaaATGCTGGGGCTGAGAATGGGAAAATTTTTTAATTCGTTTTT
TTTaagaaccttccaatccagccttccatgaggctgattatgtcaaaaag
tttagaaacatgtaagaaacatttaaggctcaaaaggccgatttcttaag
aaataaaagtttgttaaaaaaatacaaaaatatatatatcttgaaaataa
agaaaatattctacCTAGATTTTTCCGTAAATTTGTCTGAGCCTTTAAGT
GAGAAAAAATATCACTAAAATctagaaacaaaatatttagttATGAAATA
TTGAGTGGTGTGActaaattgttttgtttatttttatttgtagaATGTGC
AGACGGTATTGGTACATGTGATAAGAGATATCATTGTGTACCAGCTTCTA
TAAATACTTGTAAAGTTACATGTGGAGTATGCAAGCCTACTATACCAGGT
AAGTGTCTAGCTTATAATCACCCTATTTTTaaccgccaattgccgcgtgg
AAATTTTTtggtccgttttaccaccctcaAACCGTCCCAATCTTTTTTTC
ACACCTAtcgacaatagaaaaaggtgtaaaaaaagNAAATTTTTtggtcc
gttttaccaccctcaAACCGTCCCAATCTTTTCTTCACACCTATCGACAA
TAGAAcaaggtgtaaaaaaaggattggaccaagtttagggggataattaa
ttAATagagtggcacgcgcctgactgcattactacggtcaaaaaggtgca
TTGCGTCTTTCTTGAAGGGAAAACTGCCACCCCAACCATTTACTGCaaat
ctaatttcaaacttcaaTTGTTCGTCTTAAAACGGGTTTAAAACGAAAAT
TTTGACATCATtagaaaattatgtttttagtTTTCCCAGACAACAGAAAT
TTTCAGTTAAAAAAGAAGGGGGTCTGAGCTATGACCAACTATGGTCAATA
GGCAAAGTACATAGATACTaaatgtcgtgctttggctgaaaagtgttcCA
ATGACCTAGGTcatgtgacattacaatagaatttcagcgcttgaccaata
agaagcttcgtaGGCTTTCGAAATCAATACACAATATTAGCAaaattttt
tgcgatattcattttttttgcttggaagagctttctgttcggaggtcaaa
ctattggtaatagttcctgaaataatagagcttttgccgtgaaattttct
gtaaattcctaacttttatttagcttcaaaataaaaaagaaattgacacc
taaatattttcacatcttgagcatgatgacatttctgacagtaagatgtc
acaaaaattgacacttttctgatacaaatttatttttgatgtcaaatata
tcttttaaaccgtaatttattgaatatttaggataaaataagcattttaa
actcaggcaactttttctAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGaagaagcccccccccccccctagttctgaa
ccacccctaaaagcttaggttgaatagggttaaagtacgacatctagccc
ttcgggatttacagaaatctgtggcaGTGTGCCGGTAAATTaagcttttt
tactttttaaaacgtaaattgaatagaaaatagcatgGCAACGGATGCAC
GACTgttatgaaataggctaataaaTTGGCTTATCATTCAATTAAgtgaa
aaatagcctaaatcaCGCATAAtgcaagaaaaatttgaaatcaagccATC
GCGCAAGAAAAATCCTAGATGATGCTATGGTCCGTTAGCCAGGGAAACGG
ATAGTAAACGCAGGAAATATACATGTACAGAGTTACAGCCATCACGGCCG
TTTACGGGAAAAAATAGTGGCAGCGGAGTTTGAAACAAACGCTGTAAAAG
CAAGGCCTATCCAACACTATAAACACCACCaccactgcttactccgcccT
GCGCTAAAGCCAACCAATCAAGCAAACCGCTTGGGCGTCAATTAATATGA
ATcaaagagaaactttgataaacattgcaaatttagtgaaacacacaaaa
gaactttctttctatagaagtggtacgattcaaaacattttttcggAACA
CCCTGTACTAAATTagaaatgttgattttttcacgaaaactttttcttct
ttttaagtTTATCTCAGTACGTAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002441XLOC_002441Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004365-exon-sc0000044-1491911889:344909..345253TCONS_00004365-exon-sc0000044-1491911889:344909..345253Clytia hemisphaericaexon
TCONS_00004365-exon-sc0000044-1510915933:344909..345253TCONS_00004365-exon-sc0000044-1510915933:344909..345253Clytia hemisphaericaexon
TCONS_00004365-exon-sc0000044-1575043694:344909..345253TCONS_00004365-exon-sc0000044-1575043694:344909..345253Clytia hemisphaericaexon
TCONS_00004365-exon-sc0000044-1491911889:348202..348306TCONS_00004365-exon-sc0000044-1491911889:348202..348306Clytia hemisphaericaexon
TCONS_00004365-exon-sc0000044-1510915933:348202..348306TCONS_00004365-exon-sc0000044-1510915933:348202..348306Clytia hemisphaericaexon
TCONS_00004365-exon-sc0000044-1575043694:348202..348306TCONS_00004365-exon-sc0000044-1575043694:348202..348306Clytia hemisphaericaexon
TCONS_00004365-exon-sc0000044-1491911889:350466..350484TCONS_00004365-exon-sc0000044-1491911889:350466..350484Clytia hemisphaericaexon
TCONS_00004365-exon-sc0000044-1510915933:350466..350484TCONS_00004365-exon-sc0000044-1510915933:350466..350484Clytia hemisphaericaexon
TCONS_00004365-exon-sc0000044-1575043694:350466..350484TCONS_00004365-exon-sc0000044-1575043694:350466..350484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:344909..350484 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.154499	0.151153	0.736057	0.436232	0.175432	0.492711	0.229972	0.427287	0.82947	0.0908768	0.272252	0.659717	6.74097	6.40259	0.307304	0.104992	0	0	0	0	0	0	0	0.130751	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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