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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004352 ID=TCONS_00004352|Name=TCONS_00004352|organism=Clytia hemisphaerica|type=transcript|length=959bp
CTTATGGTGTATTTACAAGACTGAATAAtatctttcaaatttcaataata
aATAGTCTCAGAGGAAAACCCGATACGACATCCCTCCCTCCTGAGACCAG
TCCCCTAAAAAtcacaaaagcctaaaaattctaaaaatcacAAAgtccta
aaaaaaacaaaatcctaACATGGTCAATATAAAATATATACATAAATAAA
TCTTCAAGTGTATGACTATTTCATCGTTTTCAGTTCATAACTATTTCTTA
TCTTTACTTCTCAGTCCGTATTTATGAGTGGCAGGCTTCTTTGTTTGAAA
CTTGACTGCCCTTCGTAATTTGTCTCTTGTAATATATTTACAAACTCCAT
CATTAAGTTCAACTTTGTACACTGGGTGTAGTACATCAACTATTTTGAAT
GGACCGTCCCATTTGAGTGTCATCTTCAATTTCTTGTTCCTTGTAAGATA
CACGTAAACTTCAGTGTCCTTTTCGAGTATATCGTTAAAAGCGTTTCTGT
CTCTGTATGTGAGTGAATACTCTTGTATGGTGTCCATAATATCTCGTGCA
ATTTCGTACATACGAGCCAATTTGACCTTGAAGTCGTCGAATGATTCGAA
TTTGTTGTTGGTTTCGTCAAATAGAATATGTAGTGGAGTTCTTGTCTTTC
TGCCATACATCAATTCGTTTGGTGTGAATCCCGTTGATCGATTCACGGAC
GTGTTATAAGCGAATGCGCACTCTCTACACCATTGATCCCATTCCCCTCC
TGAGAAATTAGTATAGGCGAGGAGATAGTTCTTGATGACGCCGTTCAATC
TCTCCGTCAACCCGTTTGAGCGAGGGTTGTATGCAGTCGTTTTCAGTTTC
TTCACCCCAAAGACAAGTTTTAAACAAGTTTAATAATTCGTTGAAAAGTT
CACTTTCATAGGCGGGGTCTTGATCACTGAGGAGTTTGAGTGGTATACCA
AACCTCAAT Run BLAST on NCBI protein sequence of TCONS_00004352-protein >TCONS_00004352-protein ID=TCONS_00004352-protein|Name=TCONS_00004352-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MYGRKTRTPLHILFDETNNKFESFDDFKVKLARMYEIARDIMDTIQEYSL
TYRDRNAFNDILEKDTEVYVYLTRNKKLKMTLKWDGPFKIVDVLHPVYKV
ELNDGVCKYITRDKLRRAVKFQTKKPATHKYGLRSKDKK Run BLAST on NCBI transcript from alignment at sc0000041:861887..862845 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004352 ID=TCONS_00004352|Name=TCONS_00004352|organism=Clytia hemisphaerica|type=transcript|length=959bp|location=Sequence derived from alignment at sc0000041:861887..862845 (Clytia hemisphaerica)
ATTGAGGTTTGGTATACCACTCAAACTCCTCAGTGATCAAGACCCCGCCT
ATGAAAGTGAACTTTTCAACGAATTATTAAACTTGTTTAAAACTTGTCTT
TGGGGTGAAGAAACTGAAAACGACTGCATACAACCCTCGCTCAAACGGGT
TGACGGAGAGATTGAACGGCGTCATCAAGAACTATCTCCTCGCCTATACT
AATTTCTCAGGAGGGGAATGGGATCAATGGTGTAGAGAGTGCGCATTCGC
TTATAACACGTCCGTGAATCGATCAACGGGATTCACACCAAACGAATTGA
TGTATGGCAGAAAGACAAGAACTCCACTACATATTCTATTTGACGAAACC
AACAACAAATTCGAATCATTCGACGACTTCAAGGTCAAATTGGCTCGTAT
GTACGAAATTGCACGAGATATTATGGACACCATACAAGAGTATTCACTCA
CATACAGAGACAGAAACGCTTTTAACGATATACTCGAAAAGGACACTGAA
GTTTACGTGTATCTTACAAGGAACAAGAAATTGAAGATGACACTCAAATG
GGACGGTCCATTCAAAATAGTTGATGTACTACACCCAGTGTACAAAGTTG
AACTTAATGATGGAGTTTGTAAATATATTACAAGAGACAAATTACGAAGG
GCAGTCAAGTTTCAAACAAAGAAGCCTGCCACTCATAAATACGGACTGAG
AAGTAAAGATAAGAAATAGTTATGAACTGAAAACGATGAAATAGTCATAC
ACTTGAAGATTTATTTATGTATATATTTTATATTGACCATGTtaggattt
tgttttttttaggacTTTgtgatttttagaatttttaggcttttgtgaTT
TTTAGGGGACTGGTCTCAGGAGGGAGGGATGTCGTATCGGGTTTTCCTCT
GAGACTATttattattgaaatttgaaagataTTATTCAGTCTTGTAAATA
CACCATAAG Coding sequence (CDS) from alignment at sc0000041:861887..862845 >TCONS_00004352 ID=TCONS_00004352|Name=TCONS_00004352|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0000041:861887..862845 (Clytia hemisphaerica)
ATGTATGGCAGAAAGACAAGAACTCCACTACATATTCTATTTGACGAAAC
CAACAACAAATTCGAATCATTCGACGACTTCAAGGTCAAATTGGCTCGTA
TGTACGAAATTGCACGAGATATTATGGACACCATACAAGAGTATTCACTC
ACATACAGAGACAGAAACGCTTTTAACGATATACTCGAAAAGGACACTGA
AGTTTACGTGTATCTTACAAGGAACAAGAAATTGAAGATGACACTCAAAT
GGGACGGTCCATTCAAAATAGTTGATGTACTACACCCAGTGTACAAAGTT
GAACTTAATGATGGAGTTTGTAAATATATTACAAGAGACAAATTACGAAG
GGCAGTCAAGTTTCAAACAAAGAAGCCTGCCACTCATAAATACGGACTGA
GAAGTAAAGATAAGAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004352-exon-sc0000041-1491911889:861887..862845 | TCONS_00004352-exon-sc0000041-1491911889:861887..862845 | Clytia hemisphaerica | exon |
| TCONS_00004352-exon-sc0000041-1510915933:861887..862845 | TCONS_00004352-exon-sc0000041-1510915933:861887..862845 | Clytia hemisphaerica | exon |
| TCONS_00004352-exon-sc0000041-1575043694:861887..862845 | TCONS_00004352-exon-sc0000041-1575043694:861887..862845 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:861887..862845 . |
Blast
The following BLAST results are available for this feature:
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