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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004351 ID=TCONS_00004351|Name=TCONS_00004351|organism=Clytia hemisphaerica|type=transcript|length=2062bp
gaaagtttatgTGTAAACCGTACTTTGCAAATAATTCAGTAATCTTTCGA
ATATGCTCAAAGTGATCTTCTTTCGTTTTTGAAAAGATCAAGCCATCGTC
GAANGTCATCAGTAAGGTTTATCGAATGTTTCAAAGGTAGTTTCGATCTC
GACAAAGGTGAATTCTCAATAGCACCGTAATAAGTTTCTAAAATTGTTTC
TAATTTTTGAATCTCGTTTCGTTCAGTTAATTCGGTATCCAAAGGAAGTT
TATTCGACGCATCCGTAGCATTTACTTCGATTTTACTCTCTTCTggaaaa
ctttctatttctCGAATTTCTGCAACAATTTgtccctttttcagtttctg
TTGGACTTCAGAATGGTTGGTTATCGGTATGGCGATGTTTCTTTCAACGT
TTTCGAAAGTTAGTTCGTTTACGTTCAAGCAATTTGGTAACTCTTCATTT
TCACATAAAAAGCTTGTACCAGTGATTGTTTTCGGTGAATTGATTCGACC
TTTGATCATCATGGTATGGTTGGGTGGTAGATAAGCGACTTTAGCGACTT
TGACGTAAGCTGTGACTGACGAAATTTTCTCCCGATAACATTGTACTGTA
ACTTTCTCATTCTCTTTCGTCGTGTAACTAAGTGTAGAGTTTTCAATGTC
TCTTTcacattttctaaatttctccTCCGTCTGAGCACCATAAATATTTG
ATTCACGTTAGATGAAATGAGAATGGGTTCATACTCTAATGTGTATTGTC
TATGTCTATTACTGTCACTTGATGGGAACGATAGATTCAAATAAGTAATA
CCATCAAATTTGAACGGTGTGCCGTCGACTGCGGTACCTGAGCGTTCGAC
TTTTTGGAGTGGTGGTTTATTTGGTAACTTCTCGAAGTCTTGTCGTTTCA
TGATGGTGACCTGTGAACCCGTACCGTACAAAAAGTCAACTGTCTTTCCA
CAAGTGTTTATCTTGATAATAGTACGCGGAGCAGGCTTGACATCATCTCT
AATCGCCCCTGTCTCAGATTTGTTTTCTGGGCAGAATTTCGAAATATGCC
CAGTTTTCTGACAATTAAAACACTTCTTTTTCTTGAAGCAACGTGAAGCA
TCATGTCCTTTCTTGTGACAAAAGGAACATGTAGGTTTGTTTGAGTTTTT
TGGTTTGTTGCCCATATTGTCGATTTTAGTGCAAAGAGTCATTACCATTT
TCTCTAGCTTATCTACGCGGTCTTCACCTTGTAGTTTGGTAGCAGATGTG
CGATGTCTGAATAGTACTGACTTCCATAAAAtcgagttttcaaaaattct
atcAATGCTTCCAGTCCTGTGGAATTCGTAAGCTGGAAAATTTTGGCTTC
TTTTCGATAGGAATCCTCCAGAGTATTGACCACGTGGTTGGTAGCAAGCG
CGTTGATGGTGTCTGCATCTGACAACCCGTATAAATCTCGTATAACAGTT
CGTAAATCGTGGACGAACGTGTTTACATTTAAGTTTTTCTTCCAAACTAA
TCCCCGAAGTTTGGTTTCTAAGGTTCTCTTGTAATCTGTCCctgcaaatt
tttcttttaacgcATCTTTTAACGTTGCATACGTGACGGTGTTATCGGCT
AAGATCTGTTCGGACACGAGTGAAAATGCGACGGAATCGGTACAGCACAG
TAGAAAGTCTTTGTATTTATCATTCTTAACGCCCGTTGCACGCAACATTG
CCTCGAAACGCTGAATCCACAACGTAAAACTAACCTCATTATCTCCACAA
AATTTCGGTATGTTAGGAATTCTCGAACCAGACGCCATacccaaaatttc
aaatgacatgcaaaatatcaaaattgaatctcaaatcaaaaatcgcaaaa
aatatgaatttctcCAAACAAAAATATGAATCGCGATCAATAAAACAACC
GATGAGCCTTGACTTCACAAAACGTATAAATATCAAACATCAaaaagatt
tctcaaaaaaaaattatcaacacCAAATGTCTctcacaaaaatacaaaaa
taatccaaATTCGATTTCGGTGGAAGCTCCAATTGTTGTGTGGAAGGAAT
TCAAGACCTTCT Run BLAST on NCBI protein sequence of TCONS_00004351-protein >TCONS_00004351-protein ID=TCONS_00004351-protein|Name=TCONS_00004351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=229bp
MVMTLCTKIDNMGNKPKNSNKPTCSFCHKKGHDASRCFKKKKCFNCQKTG
HISKFCPENKSETGAIRDDVKPAPRTIIKINTCGKTVDFLYGTGSQVTIM
KRQDFEKLPNKPPLQKVERSGTAVDGTPFKFDGITYLNLSFPSSDSNRHR
QYTLEYEPILISSNVNQIFMVLRRRRNLENVKETLKTLHLVTRRKRMRKL
QYNVIGRKFRQSQLTSKSLKSLIYHPTIP Run BLAST on NCBI transcript from alignment at sc0000041:858544..860605 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004351 ID=TCONS_00004351|Name=TCONS_00004351|organism=Clytia hemisphaerica|type=transcript|length=2062bp|location=Sequence derived from alignment at sc0000041:858544..860605 (Clytia hemisphaerica)
AGAAGGTCTTGAATTCCTTCCACACAACAATTGGAGCTTCCACCGAAATC
GAATttggattatttttgtatttttgtgagAGACATTTGgtgttgataat
ttttttttgagaaatcttttTGATGTTTGATATTTATACGTTTTGTGAAG
TCAAGGCTCATCGGTTGTTTTATTGATCGCGATTCATATTTTTGTTTGga
gaaattcatattttttgcgatttttgatttgagattcaattttgatattt
tgcatgtcatttgaaattttgggtATGGCGTCTGGTTCGAGAATTCCTAA
CATACCGAAATTTTGTGGAGATAATGAGGTTAGTTTTACGTTGTGGATTC
AGCGTTTCGAGGCAATGTTGCGTGCAACGGGCGTTAAGAATGATAAATAC
AAAGACTTTCTACTGTGCTGTACCGATTCCGTCGCATTTTCACTCGTGTC
CGAACAGATCTTAGCCGATAACACCGTCACGTATGCAACGTTAAAAGATg
cgttaaaagaaaaatttgcagGGACAGATTACAAGAGAACCTTAGAAACC
AAACTTCGGGGATTAGTTTGGAAGAAAAACTTAAATGTAAACACGTTCGT
CCACGATTTACGAACTGTTATACGAGATTTATACGGGTTGTCAGATGCAG
ACACCATCAACGCGCTTGCTACCAACCACGTGGTCAATACTCTGGAGGAT
TCCTATCGAAAAGAAGCCAAAATTTTCCAGCTTACGAATTCCACAGGACT
GGAAGCATTgatagaatttttgaaaactcgaTTTTATGGAAGTCAGTACT
ATTCAGACATCGCACATCTGCTACCAAACTACAAGGTGAAGACCGCGTAG
ATAAGCTAGAGAAAATGGTAATGACTCTTTGCACTAAAATCGACAATATG
GGCAACAAACCAAAAAACTCAAACAAACCTACATGTTCCTTTTGTCACAA
GAAAGGACATGATGCTTCACGTTGCTTCAAGAAAAAGAAGTGTTTTAATT
GTCAGAAAACTGGGCATATTTCGAAATTCTGCCCAGAAAACAAATCTGAG
ACAGGGGCGATTAGAGATGATGTCAAGCCTGCTCCGCGTACTATTATCAA
GATAAACACTTGTGGAAAGACAGTTGACTTTTTGTACGGTACGGGTTCAC
AGGTCACCATCATGAAACGACAAGACTTCGAGAAGTTACCAAATAAACCA
CCACTCCAAAAAGTCGAACGCTCAGGTACCGCAGTCGACGGCACACCGTT
CAAATTTGATGGTATTACTTATTTGAATCTATCGTTCCCATCAAGTGACA
GTAATAGACATAGACAATACACATTAGAGTATGAACCCATTCTCATTTCA
TCTAACGTGAATCAAATATTTATGGTGCTCAGACGGAggagaaatttaga
aaatgtgAAAGAGACATTGAAAACTCTACACTTAGTTACACGACGAAAGA
GAATGAGAAAGTTACAGTACAATGTTATCGGGAGAAAATTTCGTCAGTCA
CAGCTTACGTCAAAGTCGCTAAAGTCGCTTATCTACCACCCAACCATACC
ATGATGATCAAAGGTCGAATCAATTCACCGAAAACAATCACTGGTACAAG
CTTTTTATGTGAAAATGAAGAGTTACCAAATTGCTTGAACGTAAACGAAC
TAACTTTCGAAAACGTTGAAAGAAACATCGCCATACCGATAACCAACCAT
TCTGAAGTCCAAcagaaactgaaaaagggacAAATTGTTGCAGAAATTCG
agaaatagaaagttttccAGAAGAGAGTAAAATCGAAGTAAATGCTACGG
ATGCGTCGAATAAACTTCCTTTGGATACCGAATTAACTGAACGAAACGAG
ATTCAAAAATTAGAAACAATTTTAGAAACTTATTACGGTGCTATTGAGAA
TTCACCTTTGTCGAGATCGAAACTACCTTTGAAACATTCGATAAACCTTA
CTGATGACNTTCGACGATGGCTTGATCTTTTCAAAAACGAAAGAAGATCA
CTTTGAGCATATTCGAAAGATTACTGAATTATTTGCAAAGTACGGTTTAC
Acataaactttc Coding sequence (CDS) from alignment at sc0000041:858544..860605 >TCONS_00004351 ID=TCONS_00004351|Name=TCONS_00004351|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0000041:858544..860605 (Clytia hemisphaerica)
ATGGTAATGACTCTTTGCACTAAAATCGACAATATGGGCAACAAACCAAA
AAACTCAAACAAACCTACATGTTCCTTTTGTCACAAGAAAGGACATGATG
CTTCACGTTGCTTCAAGAAAAAGAAGTGTTTTAATTGTCAGAAAACTGGG
CATATTTCGAAATTCTGCCCAGAAAACAAATCTGAGACAGGGGCGATTAG
AGATGATGTCAAGCCTGCTCCGCGTACTATTATCAAGATAAACACTTGTG
GAAAGACAGTTGACTTTTTGTACGGTACGGGTTCACAGGTCACCATCATG
AAACGACAAGACTTCGAGAAGTTACCAAATAAACCACCACTCCAAAAAGT
CGAACGCTCAGGTACCGCAGTCGACGGCACACCGTTCAAATTTGATGGTA
TTACTTATTTGAATCTATCGTTCCCATCAAGTGACAGTAATAGACATAGA
CAATACACATTAGAGTATGAACCCATTCTCATTTCATCTAACGTGAATCA
AATATTTATGGTGCTCAGACGGAggagaaatttagaaaatgtgAAAGAGA
CATTGAAAACTCTACACTTAGTTACACGACGAAAGAGAATGAGAAAGTTA
CAGTACAATGTTATCGGGAGAAAATTTCGTCAGTCACAGCTTACGTCAAA
GTCGCTAAAGTCGCTTATCTACCACCCAACCATACCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004351-exon-sc0000041-1491911889:858544..860605 | TCONS_00004351-exon-sc0000041-1491911889:858544..860605 | Clytia hemisphaerica | exon |
| TCONS_00004351-exon-sc0000041-1510915933:858544..860605 | TCONS_00004351-exon-sc0000041-1510915933:858544..860605 | Clytia hemisphaerica | exon |
| TCONS_00004351-exon-sc0000041-1575043694:858544..860605 | TCONS_00004351-exon-sc0000041-1575043694:858544..860605 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:858544..860605 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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