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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004350 ID=TCONS_00004350|Name=TCONS_00004350|organism=Clytia hemisphaerica|type=transcript|length=2694bp
ATAACACAAGTGtcgataaaataaaaatttctaacatAATAAAAACCTTT
CGTTTTTTACTCGTCATTATCATCATCCTCCAATTGCCATTGTGATGGAG
TATAGTTCTGAATGTACTTGTTGAAGTTGTTTGTTAACTGTGTGAATGAT
GAATATTGTCGTGGTATATAAAGTATGCCAAAGCATGTCTGAGATCCTGG
TTTAAGATAATCTACCGGTAGATTACAAAAGATGACTTTAATTTTGGAAT
TTGTCATCATCGAAGCTGACGCTGTTATGAATCGAAGCAATTGGGATAAC
TCATTTTCATTGCATGCAGATATATAACGATGGAGCCACGTGATGATACG
TTGCTCATGATTAGACTCTTCATTGACAAGTAGATTTTCGATTATTGCTT
CGCTGGATGGTTTGCTTCGTACATAGATTTCTTCCAATAACAAAGGGgac
aagtttttaaaaaaagacatGCCTCTTACAATAGACTGCATTTGAAAGCA
GGGTGCTTGCACCAATGCAACATGGGCTGCTTCTTGACACAGCCTTGTTA
GGTTTGCTTCCTTGGGgctttcaaaaatgttaaattcGGAAAGAATTCTG
GTGGCAGTAGTCGTATGTGAGGCTGATTTCTCATTGAAATTAGACAAAGT
TATTTCTTCCCGTTCTGGTAGGAAATTAAAAAACGACTCCAGCAACTCAG
TTGTGTTTACAGTACCAAAGAGATAATACTTCATGGTTGCTCTGGATAGC
ATGATTGGAAACATTTGAAACAAAATGAACGAGTGTGTTATTATTCGACC
AATGACTTCTGCATCTTTTAGTCGGCTATGTGGGACAATCTCTCTGCTCC
CTTCGAAGCGatttttcaattcatcaaaGAAGCAGGAAAAAGCATCCTTC
GCAACTCCATATCCACTTGCTTTTTCATTCTCTAATTTGAGGACCAATCG
TTGGTACAAATCTGGTTTTTCCTCTGAATAAAGTTTGATAAAGCTGTTAT
ATATGTCATCTCGAATTAAAGTGCCACTGAATGAATCATCGATTAGTTCT
TGTAATGCTTCCTTTCGTTTCTCTTCCAAACCATCTTTTAATTGAAGGGG
GTTTTTGTTGGTTGGTGAGCTGCCAAAATCTAAAGGAGGGTCTTGGCCAG
TGGGCAAACTTGCACGATTTAAAGGGGGGTCCTGACCAGTAGGTAGACTT
CCACGGTTTGAAAGGGGGGCCTGGACAGTAGGTAAACTTGATTGATTTGT
AGGGGGGTCCTGTAAGGTACCAAAACCTCTAAATGCTACAGTGCCAGTAG
GCGACATCAAGATTTCATGATCAACTTCATTCATGTTGTAAACACCTGTC
TCAATCTTTAATGAAGGAGGAACAATTCGTCTTTCTGCGTTGTACAGGTT
GAAGTGTTCTGGCCTGAGAGACAAACTTCCTATCCAGTCATACACAGCGG
TCATAGATGAATCTGGCTTAAAGAATCTGGTTTGTGTTTTCAGAGTTGGG
TGACGGACTGCCACTACAACATGTTCGTCTTCCAATGAAAGTTCTGGAGG
AACTCTTGATAACCTTGATTGTCTTAATTGCTTGAGCCTTTCTTCTTCCT
GGAGAAGTGCTTGTTGTTCCTCTATTCTGATTCTTTCATTACGAAATTCC
AGTTCTTCTTCGTAACGTAGAGCCTCTTCAGCTTCTTTTTCCTTTCTTTG
ATCAATCAAAAGTGCCTCTTCATATGCTTTATTTTGCTCTTCAATCAGTG
CCCTCCTTGCATTTAGGTCTGAATTGTTCATTGGTCTGTTTGGTGTGGTG
TTTGGCGAAGTACTTGATTGTGATGTATCTGCTAGGACTTCAGGAGCTTC
AAGCGATCTTCTGGATTCAGGTCTGTAATGATGTGACGGTGGTGTTGCTA
TTGGAAGGCTTGCAGAAAATATCTTAGGTTTTGTCTGAAAAAATATGCGA
GGTCTTGCCATTTTATATAGGTCCAGATATCCACCAAAGGTAAAAGGGTT
ACCATGATAAATGTCCGGGATAGGATCATGCTTATAATCTGCGATGATCA
TGTGACATTCATTAggaaaatgttcttttcttctCCCAGTCCAGAAAATT
GTAACACAATAATTGAAAAGTTCTTGTTTGGTGGTGTCTTTACTAAATTT
TTCACTTCTTGATCCACCTCCCTTTTCAGCCTTTACGatagcaaatttat
ttttctgtcTGTCGAAATGTTCCCAACTTAGGTGCAATCTCTTTGAAGAG
GTTTTAGGCGATTCTTCTTGCTTTGATTGACGTTTTGACTTGTTGTTTTG
AAGGTAGCTTTTAAGTTCATACTTCCTTTCATTGTTGTCTGCTTTAGAAC
AAAAAACTCGCATTCTGATGATGTCACCATCTGCTGTTAGtccattcttt
ttcaaaatttcatctgTTGCGTGTAAAATGGCTTCAATGTCAAGCTGTAT
AGAATAAAAAAGGATGCTACAAAAAGGAGTcgaatataataaaaaaaaat
aattaattaatttctataattttggcaaagttttcgaaatttaccaaaaa
tttGAGTAGTTTTACTACACAAAATTGACATAAAAACTAGTATAGTACAG
TAGTACAATAGCATCTCTCCGTCTTGAACACACAAATAACTTTTAGGAAA
AAAGCTAtacaaaaaacagtttttggataattttgagGGTGGTG Run BLAST on NCBI protein sequence of TCONS_00004350-protein >TCONS_00004350-protein ID=TCONS_00004350-protein|Name=TCONS_00004350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=768bp
MRVFCSKADNNERKYELKSYLQNNKSKRQSKQEESPKTSSKRLHLSWEHF
DRQKNKFAIVKAEKGGGSRSEKFSKDTTKQELFNYCVTIFWTGRRKEHFP
NECHMIIADYKHDPIPDIYHGNPFTFGGYLDLYKMARPRIFFQTKPKIFS
ASLPIATPPSHHYRPESRRSLEAPEVLADTSQSSTSPNTTPNRPMNNSDL
NARRALIEEQNKAYEEALLIDQRKEKEAEEALRYEEELEFRNERIRIEEQ
QALLQEEERLKQLRQSRLSRVPPELSLEDEHVVVAVRHPTLKTQTRFFKP
DSSMTAVYDWIGSLSLRPEHFNLYNAERRIVPPSLKIETGVYNMNEVDHE
ILMSPTGTVAFRGFGTLQDPPTNQSSLPTVQAPLSNRGSLPTGQDPPLNR
ASLPTGQDPPLDFGSSPTNKNPLQLKDGLEEKRKEALQELIDDSFSGTLI
RDDIYNSFIKLYSEEKPDLYQRLVLKLENEKASGYGVAKDAFSCFFDELK
NRFEGSREIVPHSRLKDAEVIGRIITHSFILFQMFPIMLSRATMKYYLFG
TVNTTELLESFFNFLPEREEITLSNFNEKSASHTTTATRILSEFNIFESP
KEANLTRLCQEAAHVALVQAPCFQMQSIVRGMSFFKNLSPLLLEEIYVRS
KPSSEAIIENLLVNEESNHEQRIITWLHRYISACNENELSQLLRFITASA
SMMTNSKIKVIFCNLPVDYLKPGSQTCFGILYIPRQYSSFTQLTNNFNKY
IQNYTPSQWQLEDDDNDE Run BLAST on NCBI transcript from alignment at sc0000041:851901..854594 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004350 ID=TCONS_00004350|Name=TCONS_00004350|organism=Clytia hemisphaerica|type=transcript|length=2694bp|location=Sequence derived from alignment at sc0000041:851901..854594 (Clytia hemisphaerica)
CACCACCctcaaaattatccaaaaactgttttttgtaTAGCTTTTTTCCT
AAAAGTTATTTGTGTGTTCAAGACGGAGAGATGCTATTGTACTACTGTAC
TATACTAGTTTTTATGTCAATTTTGTGTAGTAAAACTACTCaaatttttg
gtaaatttcgaaaactttgccaaaattatagaaattaattaattattttt
ttttattatattcgACTCCTTTTTGTAGCATCCTTTTTTATTCTATACAG
CTTGACATTGAAGCCATTTTACACGCAAcagatgaaattttgaaaaagaa
tggaCTAACAGCAGATGGTGACATCATCAGAATGCGAGTTTTTTGTTCTA
AAGCAGACAACAATGAAAGGAAGTATGAACTTAAAAGCTACCTTCAAAAC
AACAAGTCAAAACGTCAATCAAAGCAAGAAGAATCGCCTAAAACCTCTTC
AAAGAGATTGCACCTAAGTTGGGAACATTTCGACAgacagaaaaataaat
ttgctatCGTAAAGGCTGAAAAGGGAGGTGGATCAAGAAGTGAAAAATTT
AGTAAAGACACCACCAAACAAGAACTTTTCAATTATTGTGTTACAATTTT
CTGGACTGGGagaagaaaagaacattttccTAATGAATGTCACATGATCA
TCGCAGATTATAAGCATGATCCTATCCCGGACATTTATCATGGTAACCCT
TTTACCTTTGGTGGATATCTGGACCTATATAAAATGGCAAGACCTCGCAT
ATTTTTTCAGACAAAACCTAAGATATTTTCTGCAAGCCTTCCAATAGCAA
CACCACCGTCACATCATTACAGACCTGAATCCAGAAGATCGCTTGAAGCT
CCTGAAGTCCTAGCAGATACATCACAATCAAGTACTTCGCCAAACACCAC
ACCAAACAGACCAATGAACAATTCAGACCTAAATGCAAGGAGGGCACTGA
TTGAAGAGCAAAATAAAGCATATGAAGAGGCACTTTTGATTGATCAAAGA
AAGGAAAAAGAAGCTGAAGAGGCTCTACGTTACGAAGAAGAACTGGAATT
TCGTAATGAAAGAATCAGAATAGAGGAACAACAAGCACTTCTCCAGGAAG
AAGAAAGGCTCAAGCAATTAAGACAATCAAGGTTATCAAGAGTTCCTCCA
GAACTTTCATTGGAAGACGAACATGTTGTAGTGGCAGTCCGTCACCCAAC
TCTGAAAACACAAACCAGATTCTTTAAGCCAGATTCATCTATGACCGCTG
TGTATGACTGGATAGGAAGTTTGTCTCTCAGGCCAGAACACTTCAACCTG
TACAACGCAGAAAGACGAATTGTTCCTCCTTCATTAAAGATTGAGACAGG
TGTTTACAACATGAATGAAGTTGATCATGAAATCTTGATGTCGCCTACTG
GCACTGTAGCATTTAGAGGTTTTGGTACCTTACAGGACCCCCCTACAAAT
CAATCAAGTTTACCTACTGTCCAGGCCCCCCTTTCAAACCGTGGAAGTCT
ACCTACTGGTCAGGACCCCCCTTTAAATCGTGCAAGTTTGCCCACTGGCC
AAGACCCTCCTTTAGATTTTGGCAGCTCACCAACCAACAAAAACCCCCTT
CAATTAAAAGATGGTTTGGAAGAGAAACGAAAGGAAGCATTACAAGAACT
AATCGATGATTCATTCAGTGGCACTTTAATTCGAGATGACATATATAACA
GCTTTATCAAACTTTATTCAGAGGAAAAACCAGATTTGTACCAACGATTG
GTCCTCAAATTAGAGAATGAAAAAGCAAGTGGATATGGAGTTGCGAAGGA
TGCTTTTTCCTGCTTCtttgatgaattgaaaaatCGCTTCGAAGGGAGCA
GAGAGATTGTCCCACATAGCCGACTAAAAGATGCAGAAGTCATTGGTCGA
ATAATAACACACTCGTTCATTTTGTTTCAAATGTTTCCAATCATGCTATC
CAGAGCAACCATGAAGTATTATCTCTTTGGTACTGTAAACACAACTGAGT
TGCTGGAGTCGTTTTTTAATTTCCTACCAGAACGGGAAGAAATAACTTTG
TCTAATTTCAATGAGAAATCAGCCTCACATACGACTACTGCCACCAGAAT
TCTTTCCgaatttaacatttttgaaagcCCCAAGGAAGCAAACCTAACAA
GGCTGTGTCAAGAAGCAGCCCATGTTGCATTGGTGCAAGCACCCTGCTTT
CAAATGCAGTCTATTGTAAGAGGCatgtctttttttaaaaacttgtcCCC
TTTGTTATTGGAAGAAATCTATGTACGAAGCAAACCATCCAGCGAAGCAA
TAATCGAAAATCTACTTGTCAATGAAGAGTCTAATCATGAGCAACGTATC
ATCACGTGGCTCCATCGTTATATATCTGCATGCAATGAAAATGAGTTATC
CCAATTGCTTCGATTCATAACAGCGTCAGCTTCGATGATGACAAATTCCA
AAATTAAAGTCATCTTTTGTAATCTACCGGTAGATTATCTTAAACCAGGA
TCTCAGACATGCTTTGGCATACTTTATATACCACGACAATATTCATCATT
CACACAGTTAACAAACAACTTCAACAAGTACATTCAGAACTATACTCCAT
CACAATGGCAATTGGAGGATGATGATAATGACGAGTAAAAAACGAAAGGT
TTTTATTatgttagaaatttttattttatcgaCACTTGTGTTAT Coding sequence (CDS) from alignment at sc0000041:851901..854594 >TCONS_00004350 ID=TCONS_00004350|Name=TCONS_00004350|organism=Clytia hemisphaerica|type=CDS|length=2307bp|location=Sequence derived from alignment at sc0000041:851901..854594 (Clytia hemisphaerica)
ATGCGAGTTTTTTGTTCTAAAGCAGACAACAATGAAAGGAAGTATGAACT
TAAAAGCTACCTTCAAAACAACAAGTCAAAACGTCAATCAAAGCAAGAAG
AATCGCCTAAAACCTCTTCAAAGAGATTGCACCTAAGTTGGGAACATTTC
GACAgacagaaaaataaatttgctatCGTAAAGGCTGAAAAGGGAGGTGG
ATCAAGAAGTGAAAAATTTAGTAAAGACACCACCAAACAAGAACTTTTCA
ATTATTGTGTTACAATTTTCTGGACTGGGagaagaaaagaacattttccT
AATGAATGTCACATGATCATCGCAGATTATAAGCATGATCCTATCCCGGA
CATTTATCATGGTAACCCTTTTACCTTTGGTGGATATCTGGACCTATATA
AAATGGCAAGACCTCGCATATTTTTTCAGACAAAACCTAAGATATTTTCT
GCAAGCCTTCCAATAGCAACACCACCGTCACATCATTACAGACCTGAATC
CAGAAGATCGCTTGAAGCTCCTGAAGTCCTAGCAGATACATCACAATCAA
GTACTTCGCCAAACACCACACCAAACAGACCAATGAACAATTCAGACCTA
AATGCAAGGAGGGCACTGATTGAAGAGCAAAATAAAGCATATGAAGAGGC
ACTTTTGATTGATCAAAGAAAGGAAAAAGAAGCTGAAGAGGCTCTACGTT
ACGAAGAAGAACTGGAATTTCGTAATGAAAGAATCAGAATAGAGGAACAA
CAAGCACTTCTCCAGGAAGAAGAAAGGCTCAAGCAATTAAGACAATCAAG
GTTATCAAGAGTTCCTCCAGAACTTTCATTGGAAGACGAACATGTTGTAG
TGGCAGTCCGTCACCCAACTCTGAAAACACAAACCAGATTCTTTAAGCCA
GATTCATCTATGACCGCTGTGTATGACTGGATAGGAAGTTTGTCTCTCAG
GCCAGAACACTTCAACCTGTACAACGCAGAAAGACGAATTGTTCCTCCTT
CATTAAAGATTGAGACAGGTGTTTACAACATGAATGAAGTTGATCATGAA
ATCTTGATGTCGCCTACTGGCACTGTAGCATTTAGAGGTTTTGGTACCTT
ACAGGACCCCCCTACAAATCAATCAAGTTTACCTACTGTCCAGGCCCCCC
TTTCAAACCGTGGAAGTCTACCTACTGGTCAGGACCCCCCTTTAAATCGT
GCAAGTTTGCCCACTGGCCAAGACCCTCCTTTAGATTTTGGCAGCTCACC
AACCAACAAAAACCCCCTTCAATTAAAAGATGGTTTGGAAGAGAAACGAA
AGGAAGCATTACAAGAACTAATCGATGATTCATTCAGTGGCACTTTAATT
CGAGATGACATATATAACAGCTTTATCAAACTTTATTCAGAGGAAAAACC
AGATTTGTACCAACGATTGGTCCTCAAATTAGAGAATGAAAAAGCAAGTG
GATATGGAGTTGCGAAGGATGCTTTTTCCTGCTTCtttgatgaattgaaa
aatCGCTTCGAAGGGAGCAGAGAGATTGTCCCACATAGCCGACTAAAAGA
TGCAGAAGTCATTGGTCGAATAATAACACACTCGTTCATTTTGTTTCAAA
TGTTTCCAATCATGCTATCCAGAGCAACCATGAAGTATTATCTCTTTGGT
ACTGTAAACACAACTGAGTTGCTGGAGTCGTTTTTTAATTTCCTACCAGA
ACGGGAAGAAATAACTTTGTCTAATTTCAATGAGAAATCAGCCTCACATA
CGACTACTGCCACCAGAATTCTTTCCgaatttaacatttttgaaagcCCC
AAGGAAGCAAACCTAACAAGGCTGTGTCAAGAAGCAGCCCATGTTGCATT
GGTGCAAGCACCCTGCTTTCAAATGCAGTCTATTGTAAGAGGCatgtctt
tttttaaaaacttgtcCCCTTTGTTATTGGAAGAAATCTATGTACGAAGC
AAACCATCCAGCGAAGCAATAATCGAAAATCTACTTGTCAATGAAGAGTC
TAATCATGAGCAACGTATCATCACGTGGCTCCATCGTTATATATCTGCAT
GCAATGAAAATGAGTTATCCCAATTGCTTCGATTCATAACAGCGTCAGCT
TCGATGATGACAAATTCCAAAATTAAAGTCATCTTTTGTAATCTACCGGT
AGATTATCTTAAACCAGGATCTCAGACATGCTTTGGCATACTTTATATAC
CACGACAATATTCATCATTCACACAGTTAACAAACAACTTCAACAAGTAC
ATTCAGAACTATACTCCATCACAATGGCAATTGGAGGATGATGATAATGA
CGAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004350-exon-sc0000041-1491911889:851901..854594 | TCONS_00004350-exon-sc0000041-1491911889:851901..854594 | Clytia hemisphaerica | exon |
| TCONS_00004350-exon-sc0000041-1510915933:851901..854594 | TCONS_00004350-exon-sc0000041-1510915933:851901..854594 | Clytia hemisphaerica | exon |
| TCONS_00004350-exon-sc0000041-1575043694:851901..854594 | TCONS_00004350-exon-sc0000041-1575043694:851901..854594 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:851901..854594 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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