TCONS_00004347 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004347
Unique NameTCONS_00004347
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length314

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004347 ID=TCONS_00004347|Name=TCONS_00004347|organism=Clytia hemisphaerica|type=transcript|length=314bp
TTTATTATGAATAAGTTTATTGTATAAGCGCTTGCAGATTTGTGTGGGCT
TGGAAGGAAAATTTATAGGTTATGTTAATCAAGAGTTTTAtggcgaccgt
agtgcagtggtagagcatccggctacggtttgCAAGATtatgggttcaac
ccccagccgggccATACGAAAGTTTCCCAAAATGGTgattgatgcctctc
tgctgcTAGATGCTTAGCAATTAAGGATAAGGATCGAGGATAAGTGAAGC
AATCCAGGAAGAAAGAgaggcgccctcccctaccttcgggtataTAGCTA
TCGAAAGATGAACT
Run BLAST on NCBI

transcript from alignment at sc0000041:738325..738638

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004347 ID=TCONS_00004347|Name=TCONS_00004347|organism=Clytia hemisphaerica|type=transcript|length=314bp|location=Sequence derived from alignment at sc0000041:738325..738638 (Clytia hemisphaerica)
AGTTCATCTTTCGATAGCTAtatacccgaaggtaggggagggcgcctcTC
TTTCTTCCTGGATTGCTTCACTTATCCTCGATCCTTATCCTTAATTGCTA
AGCATCTAgcagcagagaggcatcaatcACCATTTTGGGAAACTTTCGTA
TggcccggctgggggttgaacccataATCTTGcaaaccgtagccggatgc
tctaccactgcactacggtcgccaTAAAACTCTTGATTAACATAACCTAT
AAATTTTCCTTCCAAGCCCACACAAATCTGCAAGCGCTTATACAATAAAC
TTATTCATAATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002427XLOC_002427Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004347-exon-sc0000041-1491911889:738325..738638TCONS_00004347-exon-sc0000041-1491911889:738325..738638Clytia hemisphaericaexon
TCONS_00004347-exon-sc0000041-1510915933:738325..738638TCONS_00004347-exon-sc0000041-1510915933:738325..738638Clytia hemisphaericaexon
TCONS_00004347-exon-sc0000041-1575043694:738325..738638TCONS_00004347-exon-sc0000041-1575043694:738325..738638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:738325..738638 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.23428	7.67699	6.31648	9.57537	0.557379	0.440704	0	0	0.582855	0.385184	0	0.53205	0	1.06879	0.205331	0	0.686184	0	0.551784	0.484678	0	0	0.81115	0.352119	0.747454	1.29845	1.35361	2.72729	0.816217	0.794745
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004347 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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