TCONS_00004342 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004342
Unique NameTCONS_00004342
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004342 ID=TCONS_00004342|Name=TCONS_00004342|organism=Clytia hemisphaerica|type=transcript|length=335bp
aatgaataaattctAAGACTAAGTCTATATCAAACAAAGTCTAGAGTATA
TGAGACTAGGGTATCATACATACAAGAGAGGATAGATTAAAGTAAACAAG
AGGAAATAATATTGaatagtaaataataaataatgctTACCAGCTTGCCA
GAGTGAAAGAACTGTGAAGGAGAAtccaaaatgtcaaaatgatttgaaga
ctatcattgattgacttatgtttattttatttgatatttatgTTGAGAAA
ATGACTAAGTCTTGAGGTGTTGACTCTCTGAGTGCTACATGTCAACTGAA
CTCTGAAGAAAGGTGGACAAGCTGCCATATTTATA
Run BLAST on NCBI

transcript from alignment at sc0000041:578333..578667

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004342 ID=TCONS_00004342|Name=TCONS_00004342|organism=Clytia hemisphaerica|type=transcript|length=335bp|location=Sequence derived from alignment at sc0000041:578333..578667 (Clytia hemisphaerica)
TATAAATATGGCAGCTTGTCCACCTTTCTTCAGAGTTCAGTTGACATGTA
GCACTCAGAGAGTCAACACCTCAAGACTTAGTCATTTTCTCAAcataaat
atcaaataaaataaacataagtcaatcaatgatagtcttcaaatcatttt
gacattttggaTTCTCCTTCACAGTTCTTTCACTCTGGCAAGCTGGTAag
cattatttattatttactattCAATATTATTTCCTCTTGTTTACTTTAAT
CTATCCTCTCTTGTATGTATGATACCCTAGTCTCATATACTCTAGACTTT
GTTTGATATAGACTTAGTCTTagaatttattcatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002422XLOC_002422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004342-exon-sc0000041-1491911889:578333..578667TCONS_00004342-exon-sc0000041-1491911889:578333..578667Clytia hemisphaericaexon
TCONS_00004342-exon-sc0000041-1510915933:578333..578667TCONS_00004342-exon-sc0000041-1510915933:578333..578667Clytia hemisphaericaexon
TCONS_00004342-exon-sc0000041-1575043694:578333..578667TCONS_00004342-exon-sc0000041-1575043694:578333..578667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:578333..578667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46975	3.02027	1.06555	1.24759	0.467062	0.701701	0	0.418465	3.55449	3.43828	3.42316	2.84259	2.17826	3.34704	1.96246	2.24263	2.45015	2.91796	5.32087	7.61545	2.4501	2.7885	1.41902	2.34805	0	0	4.2469	0.412037	1.87509	0.955211
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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