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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004341 ID=TCONS_00004341|Name=TCONS_00004341|organism=Clytia hemisphaerica|type=transcript|length=1827bp
gggacactaaagtttcagtttgaagtgtttactttttataagaaaacaaa
aaactcaATTTTCTAGTCTAGAAGAGCAGAAGAGCATAGGCCTTCCCTTA
AGGGAATAGGCCTCCTGAAAAAAATAGTCAGGAGAATATCATATATATAA
GAAAATACTAGAAGAAATAAAAGTCTAGCTATAAATTCAAATTATTAATG
AAATTTCTCCATTGAAATCTATCAGATGCAAGAACATGCCAACATGACTT
ATCAACGttacgttttttgaaaaatttgaaaaaagattgaCCAAACGTAT
AGCGAGGGGCCCCTTTAGGGCGCTTCAAGCGGACCCAGCAAGAAATCATT
TTTCTTGGTAAACAAAACCAGGGCATTTGAATTACAGGGCCAGCCCATGC
TAATTTGACGTTGACAGAGATAGCTATCAATCAAATTCAAACAAACTTTA
TTCAAAAGCTCAACATTACTAATTCTCTTTACCCATGTCTGGTATCGATT
TACGTGACACATGATTGGAACGCATCGATAATGAACATTTTGTAAACTCG
TTAACAAACTCTCAGTTAAACTCCAACATTTGACACCATACAATAGAATA
GGAATAACATAGATAGGTAGAGTAAACTTTTCCTTTGACAGCAAAATTGA
CActtgaatttgagaaaatacatTTCTTAAGAGAACCAAATGCGATGCTT
GCTTTCTGGATCCTCATTTGAACGTCACCTTTGTTGGAGCAGTCGTTGTT
AATCATACTCCCTAAATAAACAAGCTTATCAACGATAGGAATGTGTAACG
CTGACCAATGATGATGTCAGACATGTCAAGGTTATCATATGTTTCCAGAT
TTTCATATTTACTCGATGGCTTTGGACAGAAAAGAACAACTTTTTTGGAG
TCTTCTCGTGGCTCCAATGGACCAGAATGTACTTCCATCCCAAAAGGAGC
GAGATGTGATATACTCTCCTCAATGCTGGACTCTGCTTCTTTTCGACTGT
TAAATAAGGGAGCAGTGTCATCGGCATACTCAGAGTCCTGGAGTTGTAGA
TCTTCTCCATCATATGCTCGTAGCTACGACCAGTCATGACAACATTTTCT
AGTTTGATGGAATCATAACTACACTCTAAGTCTTTCAAAACCTGTAAAGG
TTTGCATCTAAATATACTTCAGTTGGTCTAGATTGCTCTATACAAATATT
ACTGATTGAAGTGTCTCGTTATTACCACCCCCAAATGGGAAAAAAGCTGG
GGACACTGTCACTAATTTTGTTAAGTCTTTTAAATGATAGCACTTGGATT
TTGAAGTCATCAAGTGGATGCAAAACCTCAAATATCATGACCTTTTTGAA
AGATATCtggatttttggacctacctggaggtcctataaattaacctttg
ttcgtccgtccgtccgtccgtccgtctgtccgtccgtccgtctgttacca
gcttttctcgagattggctcattagttttttctgatttttggcacaaaga
tgcaaaatggcaatgcccgaaatgtgacggagcccgattttcgaaaaaaa
aatttttccggccgaaaatgccggaaatatgccggaaaaaccggtttttt
gacattttctcgagattccatcattagttttttctgatttttttcttaaa
gatgcgtattaacaatgcccaaaacatgaccgggtccgatttttgagaaa
aaattttttccagccgaaaatgccggaaatatgccggaaaaaccggtttt
ttgacattttctcgagattccatcattagttttttctgatttttttctta
aagatgcgtattaacaatgcccaaaac Run BLAST on NCBI transcript from alignment at sc0000041:573253..575079 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004341 ID=TCONS_00004341|Name=TCONS_00004341|organism=Clytia hemisphaerica|type=transcript|length=1827bp|location=Sequence derived from alignment at sc0000041:573253..575079 (Clytia hemisphaerica)
gttttgggcattgttaatacgcatctttaagaaaaaaatcagaaaaaact
aatgatggaatctcgagaaaatgtcaaaaaaccggtttttccggcatatt
tccggcattttcggctggaaaaaattttttctcaaaaatcggacccggtc
atgttttgggcattgttaatacgcatctttaagaaaaaaatcagaaaaaa
ctaatgatggaatctcgagaaaatgtcaaaaaaccggtttttccggcata
tttccggcattttcggccggaaaaatttttttttcgaaaatcgggctccg
tcacatttcgggcattgccattttgcatctttgtgccaaaaatcagaaaa
aactaatgagccaatctcgagaaaagctggtaacagacggacggacggac
agacggacggacggacggacggacgaacaaaggttaatttataggacctc
caggtaggtccaaaaatccaGATATCTTTCAAAAAGGTCATGATATTTGA
GGTTTTGCATCCACTTGATGACTTCAAAATCCAAGTGCTATCATTTAAAA
GACTTAACAAAATTAGTGACAGTGTCCCCAGCTTTTTTCCCATTTGGGGG
TGGTAATAACGAGACACTTCAATCAGTAATATTTGTATAGAGCAATCTAG
ACCAACTGAAGTATATTTAGATGCAAACCTTTACAGGTTTTGAAAGACTT
AGAGTGTAGTTATGATTCCATCAAACTAGAAAATGTTGTCATGACTGGTC
GTAGCTACGAGCATATGATGGAGAAGATCTACAACTCCAGGACTCTGAGT
ATGCCGATGACACTGCTCCCTTATTTAACAGTCGAAAAGAAGCAGAGTCC
AGCATTGAGGAGAGTATATCACATCTCGCTCCTTTTGGGATGGAAGTACA
TTCTGGTCCATTGGAGCCACGAGAAGACTCCAAAAAAGTTGTTCTTTTCT
GTCCAAAGCCATCGAGTAAATATGAAAATCTGGAAACATATGATAACCTT
GACATGTCTGACATCATCATTGGTCAGCGTTACACATTCCTATCGTTGAT
AAGCTTGTTTATTTAGGGAGTATGATTAACAACGACTGCTCCAACAAAGG
TGACGTTCAAATGAGGATCCAGAAAGCAAGCATCGCATTTGGTTCTCTTA
AGAAatgtattttctcaaattcaagTGTCAATTTTGCTGTCAAAGGAAAA
GTTTACTCTACCTATCTATGTTATTCCTATTCTATTGTATGGTGTCAAAT
GTTGGAGTTTAACTGAGAGTTTGTTAACGAGTTTACAAAATGTTCATTAT
CGATGCGTTCCAATCATGTGTCACGTAAATCGATACCAGACATGGGTAAA
GAGAATTAGTAATGTTGAGCTTTTGAATAAAGTTTGTTTGAATTTGATTG
ATAGCTATCTCTGTCAACGTCAAATTAGCATGGGCTGGCCCTGTAATTCA
AATGCCCTGGTTTTGTTTACCAAGAAAAATGATTTCTTGCTGGGTCCGCT
TGAAGCGCCCTAAAGGGGCCCCTCGCTATACGTTTGGtcaatcttttttc
aaatttttcaaaaaacgtaaCGTTGATAAGTCATGTTGGCATGTTCTTGC
ATCTGATAGATTTCAATGGAGAAATTTCATTAATAATTTGAATTTATAGC
TAGACTTTTATTTCTTCTAGTATTTTCTTATATATATGATATTCTCCTGA
CTATTTTTTTCAGGAGGCCTATTCCCTTAAGGGAAGGCCTATGCTCTTCT
GCTCTTCTAGACTAGAAAATtgagttttttgttttcttataaaaagtaaa
cacttcaaactgaaactttagtgtccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004341-exon-sc0000041-1491911889:573253..575079 | TCONS_00004341-exon-sc0000041-1491911889:573253..575079 | Clytia hemisphaerica | exon |
| TCONS_00004341-exon-sc0000041-1510915933:573253..575079 | TCONS_00004341-exon-sc0000041-1510915933:573253..575079 | Clytia hemisphaerica | exon |
| TCONS_00004341-exon-sc0000041-1575043694:573253..575079 | TCONS_00004341-exon-sc0000041-1575043694:573253..575079 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:573253..575079 . |
Blast
The following BLAST results are available for this feature:
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