TCONS_00004339 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004339
Unique NameTCONS_00004339
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length780

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004339 ID=TCONS_00004339|Name=TCONS_00004339|organism=Clytia hemisphaerica|type=transcript|length=780bp
gctaattatgcaggtTTTTTAGAGCGATAACAACAAAATCTATTCACGCA
AAACAaatcccttaagggcaagagacttGGTaaatgacgagccgtttttc
cattgttttcaagaaactgtttttccatctcttaaCATTCCTCCGGTCAA
ACGAGCCTTCAAATACAAATCGAATTcaattcaatcatcaatcaaaattc
aatcaaatcGAACGAGCTAATCGGTcaatattttgtgattttagccaaat
ttaCATTCTAGTTTTTAAAATACTAATCAGACAGGTGGCCATATCtacca
ctggtcaaaatttcaagttcaaaTTACTTGTCAATCATAAGATTTTAAGG
GAGACCTCGAGCACCCTCCCCCCAGGATGCTTCCCCTAGTGAAGAAAGGA
AGATTAAGGGTAAAAAGATTACCTTCAGAACGCCCCCAGGAGTTGACTTT
AATCTGTGAATTATTTTCACGGAGCAATGAATTATAGATTTTGGTACTGC
ATTTGGTTAGAATAAtttaaataatttgaataattcaAAAACTTCAGCCA
GTTAGTACAAGATGCGAAAAGATTTCCACTCCACACCCCCTTACTTAGTA
TCTGCCATaatataccgggtgtgccaaaaaaaataggcctaaaattgaaa
ctttgacgtaacttttttcagttagaatagtgattattttaaattttatc
ttaATTCATTATTGCTCCATGTAAGAGGGCCTTTACAATAAATTCAATac
ccatagtgtcctccaggttggttcccccta
Run BLAST on NCBI

transcript from alignment at sc0000041:530774..531553

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004339 ID=TCONS_00004339|Name=TCONS_00004339|organism=Clytia hemisphaerica|type=transcript|length=780bp|location=Sequence derived from alignment at sc0000041:530774..531553 (Clytia hemisphaerica)
tagggggaaccaacctggaggacactatgggtATTGAATTTATTGTAAAG
GCCCTCTTACATGGAGCAATAATGAATtaagataaaatttaaaataatca
ctattctaactgaaaaaagttacgtcaaagtttcaattttaggcctattt
tttttggcacacccggtatattATGGCAGATACTAAGTAAGGGGGTGTGG
AGTGGAAATCTTTTCGCATCTTGTACTAACTGGCTGAAGTTTTtgaatta
ttcaaattatttaaaTTATTCTAACCAAATGCAGTACCAAAATCTATAAT
TCATTGCTCCGTGAAAATAATTCACAGATTAAAGTCAACTCCTGGGGGCG
TTCTGAAGGTAATCTTTTTACCCTTAATCTTCCTTTCTTCACTAGGGGAA
GCATCCTGGGGGGAGGGTGCTCGAGGTCTCCCTTAAAATCTTATGATTGA
CAAGTAAtttgaacttgaaattttgaccagtggtaGATATGGCCACCTGT
CTGATTAGTATTTTAAAAACTAGAATGtaaatttggctaaaatcacaaaa
tattgACCGATTAGCTCGTTCgatttgattgaattttgattgatgattga
attgAATTCGATTTGTATTTGAAGGCTCGTTTGACCGGAGGAATGttaag
agatggaaaaacagtttcttgaaaacaatggaaaaacggctcgtcatttA
CCaagtctcttgcccttaagggattTGTTTTGCGTGAATAGATTTTGTTG
TTATCGCTCTAAAAAacctgcataattagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002419XLOC_002419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004339-exon-sc0000041-1491911889:530774..531553TCONS_00004339-exon-sc0000041-1491911889:530774..531553Clytia hemisphaericaexon
TCONS_00004339-exon-sc0000041-1510915933:530774..531553TCONS_00004339-exon-sc0000041-1510915933:530774..531553Clytia hemisphaericaexon
TCONS_00004339-exon-sc0000041-1575043694:530774..531553TCONS_00004339-exon-sc0000041-1575043694:530774..531553Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:530774..531553 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.93199	0.66648	0.957711	0.963568	0.251368	0.331057	0.159763	0.448704	0	0	0.0629487	0.04138	0.270576	0	0.197311	0.265033	0.0932855	0	0.264194	0	0.120147	0.17581	0.14248	0.194303	0.200127	0.119073	0.255589	0.0909237	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004339 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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