TCONS_00004334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004334
Unique NameTCONS_00004334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004334 ID=TCONS_00004334|Name=TCONS_00004334|organism=Clytia hemisphaerica|type=transcript|length=690bp
AAATTATAAACGGATTACAAAGTATCGAAATAATGAGTATTAAAGTCCAT
TTAGTGCCAAAAGGgagaaaaacctttttgaaaatcaagatAGGAACAAA
AATTAGGCGCTTACAAAGATTTCTAGGTGGAAACCGTaaagattttcaag
ttttatattAACTAAAATATAGTTCATGcatttatttagaaaaatattac
aaaacatcCCTGTAGTTGACAAATAGCTTTTTCAAATATTCCAATTTTAG
GTCAAAACGCATGAGATTGAGGACTCTTAGATTTCggtaatgtttttgaa
aaggtATGGGGGCAATAAAAAGGTTTCCTAACTCTGATGGGGGGGGTGGT
TAAAATTGAGCAACCAAATGACTCATAGGACACCATGTCTCAATGTAACA
CAGACAACTTAATGAATTTACATCAAGGggtaaataactcgaaaaaatct
TGCTCACTTTTCCAAAATAACCCCAAAAAATCTAAANgctcaaggccgcg
caactttggtaggatttgttggcttcaaatcctaccaaggagattgacct
ctagccttcggcttgaaactcaatgacaAAAATGTGTCtacttttccaat
tttttcctcCCGGTtaaccattttactttttataaagaCATATAATGATT
AATAACTGAATACTTTAAAAGCAAGAAGCTAAGCTCGAAG
Run BLAST on NCBI

transcript from alignment at sc0000041:494550..495239

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004334 ID=TCONS_00004334|Name=TCONS_00004334|organism=Clytia hemisphaerica|type=transcript|length=690bp|location=Sequence derived from alignment at sc0000041:494550..495239 (Clytia hemisphaerica)
CTTCGAGCTTAGCTTCTTGCTTTTAAAGTATTCAGTTATTAATCATTATA
TGtctttataaaaagtaaaatggttaACCGGgaggaaaaaattggaaaag
taGACACATTTTtgtcattgagtttcaagccgaaggctagaggtcaatct
ccttggtaggatttgaagccaacaaatcctaccaaagttgcgcggccttg
agcNTTTAGATTTTTTGGGGTTATTTTGGAAAAGTGAGCAagattttttc
gagttatttaccCCTTGATGTAAATTCATTAAGTTGTCTGTGTTACATTG
AGACATGGTGTCCTATGAGTCATTTGGTTGCTCAATTTTAACCACCCCCC
CCATCAGAGTTAGGAAACCTTTTTATTGCCCCCATaccttttcaaaaaca
ttaccGAAATCTAAGAGTCCTCAATCTCATGCGTTTTGACCTAAAATTGG
AATATTTGAAAAAGCTATTTGTCAACTACAGGgatgttttgtaatatttt
tctaaataaatgCATGAACTATATTTTAGTTaatataaaacttgaaaatc
tttACGGTTTCCACCTAGAAATCTTTGTAAGCGCCTAATTTTTGTTCCTa
tcttgattttcaaaaaggtttttctcCCTTTTGGCACTAAATGGACTTTA
ATACTCATTATTTCGATACTTTGTAATCCGTTTATAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002414XLOC_002414Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004334-exon-sc0000041-1491911889:494550..495239TCONS_00004334-exon-sc0000041-1491911889:494550..495239Clytia hemisphaericaexon
TCONS_00004334-exon-sc0000041-1510915933:494550..495239TCONS_00004334-exon-sc0000041-1510915933:494550..495239Clytia hemisphaericaexon
TCONS_00004334-exon-sc0000041-1575043694:494550..495239TCONS_00004334-exon-sc0000041-1575043694:494550..495239Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:494550..495239 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31713	1.38931	0.885939	0.97134	4.11746	2.17166	2.55112	3.79204	1.52335	1.41681	1.14638	2.16324	1.02535	1.41401	1.74768	1.03023	2.12067	1.26356	0.74361	0.871206	5.24581	4.88652	3.04143	2.81571	0.404721	1.14551	1.74834	2.18471	2.50343	1.62936
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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