|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004333 ID=TCONS_00004333|Name=TCONS_00004333|organism=Clytia hemisphaerica|type=transcript|length=850bp
tctaaaaattgagtcggtcggtctacaaaaagTGAGGccgtcggtctaca
aagtgaggcggtcggtcgggctacaaagtgaggcggttggtcaatctaaa
aagtgaggcggtcagtcggtctaaaaattgagtcggtctacaaaaagtga
ggcggtcagtcggtctaaaaattgagtcggtctacaaaaagtgaggcggt
cggtcggtctacaaagtgaggcggtcggtcaatctaaaaagtgaggcggt
cggtcggtctacaaagtgaggcggtcggtcggtctacaaNGTATCCGAAC
AGCTTTCTTCTCTTCCCCATTATAAGTGATTGTTGGGATGAATATCACCC
AAGCCAATATCCAAACCAAAACTGAGGCTAGTTTTGCTTTGCGCATGCTC
CAATACAGACTATATTTGATGTTCaaataaacagataaaaatcGATCGAC
CGTGATTAAAGTCATTGCTCCAAAGTACACAATATAACATACTATCCCCA
TGAAAAGGTTTAACTGTGGTATACTGAAACCTTGTTCCAAATTCAAAATA
GCTTGAACAGTAAAACATGTAAGATACATAAGTTCAGCTATACTTAACTG
TGCTAAGTAAAATCTCTGTATGGATGgaaagttttgatttgttttgacat
GGTATAGCAAATATAAACCAAGGACGTGTAGTGTTAGTGTTGTACAACAT
AAAATGATCGTCAAAATAAACAGAATCCCCATTCTTGGGTTTATTAAATC
ATTTTGCCATAtcttcaataaatttgattcaACGCTTCTGATATTACTTC
ATTGGAGTTTGAACagcttttctgaaattttctcgATTTCGTTCGAAAAA Run BLAST on NCBI protein sequence of TCONS_00004333-protein >TCONS_00004333-protein ID=TCONS_00004333-protein|Name=TCONS_00004333-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MGILFILTIILCCTTLTLHVLGLYLLYHVKTNQNFPSIQRFYLAQLSIAE
LMYLTCFTVQAILNLEQGFSIPQLNLFMGIVCYIVYFGAMTLITVDRFLS
VYLNIKYSLYWSMRKAKLASVLVWILAWVIFIPTITYNGEEKKAVRIXCR
PTDRLTL Run BLAST on NCBI transcript from alignment at sc0000041:488530..489379 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004333 ID=TCONS_00004333|Name=TCONS_00004333|organism=Clytia hemisphaerica|type=transcript|length=850bp|location=Sequence derived from alignment at sc0000041:488530..489379 (Clytia hemisphaerica)
TTTTTCGAACGAAATcgagaaaatttcagaaaagctGTTCAAACTCCAAT
GAAGTAATATCAGAAGCGTtgaatcaaatttattgaagaTATGGCAAAAT
GATTTAATAAACCCAAGAATGGGGATTCTGTTTATTTTGACGATCATTTT
ATGTTGTACAACACTAACACTACACGTCCTTGGTTTATATTTGCTATACC
atgtcaaaacaaatcaaaactttcCATCCATACAGAGATTTTACTTAGCA
CAGTTAAGTATAGCTGAACTTATGTATCTTACATGTTTTACTGTTCAAGC
TATTTTGAATTTGGAACAAGGTTTCAGTATACCACAGTTAAACCTTTTCA
TGGGGATAGTATGTTATATTGTGTACTTTGGAGCAATGACTTTAATCACG
GTCGATCgatttttatctgtttatttGAACATCAAATATAGTCTGTATTG
GAGCATGCGCAAAGCAAAACTAGCCTCAGTTTTGGTTTGGATATTGGCTT
GGGTGATATTCATCCCAACAATCACTTATAATGGGGAAGAGAAGAAAGCT
GTTCGGATACNttgtagaccgaccgaccgcctcactttgtagaccgaccg
accgcctcactttttagattgaccgaccgcctcactttgtagaccgaccg
accgcctcactttttgtagaccgactcaatttttagaccgactgaccgcc
tcactttttgtagaccgactcaatttttagaccgactgaccgcctcactt
tttagattgaccaaccgcctcactttgtagcccgaccgaccgcctcactt
tgtagaccgacggCCTCActttttgtagaccgaccgactcaatttttaga
Coding sequence (CDS) from alignment at sc0000041:488530..489379 >TCONS_00004333 ID=TCONS_00004333|Name=TCONS_00004333|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0000041:488530..489379 (Clytia hemisphaerica)
ATGGGGATTCTGTTTATTTTGACGATCATTTTATGTTGTACAACACTAAC
ACTACACGTCCTTGGTTTATATTTGCTATACCatgtcaaaacaaatcaaa
actttcCATCCATACAGAGATTTTACTTAGCACAGTTAAGTATAGCTGAA
CTTATGTATCTTACATGTTTTACTGTTCAAGCTATTTTGAATTTGGAACA
AGGTTTCAGTATACCACAGTTAAACCTTTTCATGGGGATAGTATGTTATA
TTGTGTACTTTGGAGCAATGACTTTAATCACGGTCGATCgatttttatct
gtttatttGAACATCAAATATAGTCTGTATTGGAGCATGCGCAAAGCAAA
ACTAGCCTCAGTTTTGGTTTGGATATTGGCTTGGGTGATATTCATCCCAA
CAATCACTTATAATGGGGAAGAGAAGAAAGCTGTTCGGATACNttgtaga
ccgaccgaccgcctcactttgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004333-exon-sc0000041-1491911889:488530..489379 | TCONS_00004333-exon-sc0000041-1491911889:488530..489379 | Clytia hemisphaerica | exon |
| TCONS_00004333-exon-sc0000041-1510915933:488530..489379 | TCONS_00004333-exon-sc0000041-1510915933:488530..489379 | Clytia hemisphaerica | exon |
| TCONS_00004333-exon-sc0000041-1575043694:488530..489379 | TCONS_00004333-exon-sc0000041-1575043694:488530..489379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:488530..489379 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
