TCONS_00004328 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004328
Unique NameTCONS_00004328
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004328 ID=TCONS_00004328|Name=TCONS_00004328|organism=Clytia hemisphaerica|type=transcript|length=697bp
CGATCTTGTATTTCACTAGAACTCCTTGATGAAAGTCTTATAAAAGCTCG
TAGAATCTTGAAAAATAATCAATACCCATCAAAGTTCTATGAGCCAATAA
TTTGAAAAACGCTTGAAAAGTTACGTAATCCACCACAAGAAAATGATAAT
GATGCCGAAAAAGAGGTTAAGAATAACATAATTGAAGATACCAAAATCTT
CGTTGAATATCGGGGAAGAGAGTCCGACGTCTTTTATCGTTCATTGAGAA
ATGCAGGTGCACCTGTAAAAGTAGTGTTTAGACTCCGAAAAATCAAAACC
ATCTTGCCATTGTTGAAAACCGAAATcgaaaaatgttacaaaagcGGTGT
AGTTTACCAAATTCTATGTCCATGTTGTAAAGCATGCTATGTCGGGCAAA
CAAACCGACACACTCTGCAGCGCATCAAAGAACACCAACGATCAAGCAGT
CCAGTCGGCCGACACCTACAAGCATGCAATATAACAATAACAATGGATGA
CGTCACAATACTAGCTCAAACTAACAAATCTGAAGACTATCTAATGACAT
TGGAAgctttaaataaaaaagatgaataCAAAAGTAGGGCCTTGACAATC
AAAGTTTAATTATCTTATTCCCTAGTGAATGCACTACAGAATTCTGATAG
TTAAACTTTGAtagttcatttttcaaacataattttGTAGAGAGGAG
Run BLAST on NCBI

transcript from alignment at sc0000041:419087..419783

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004328 ID=TCONS_00004328|Name=TCONS_00004328|organism=Clytia hemisphaerica|type=transcript|length=697bp|location=Sequence derived from alignment at sc0000041:419087..419783 (Clytia hemisphaerica)
CTCCTCTCTACaaaattatgtttgaaaaatgaactaTCAAAGTTTAACTA
TCAGAATTCTGTAGTGCATTCACTAGGGAATAAGATAATTAAACTTTGAT
TGTCAAGGCCCTACTTTTGtattcatcttttttatttaaagcTTCCAATG
TCATTAGATAGTCTTCAGATTTGTTAGTTTGAGCTAGTATTGTGACGTCA
TCCATTGTTATTGTTATATTGCATGCTTGTAGGTGTCGGCCGACTGGACT
GCTTGATCGTTGGTGTTCTTTGATGCGCTGCAGAGTGTGTCGGTTTGTTT
GCCCGACATAGCATGCTTTACAACATGGACATAGAATTTGGTAAACTACA
CCgcttttgtaacatttttcgATTTCGGTTTTCAACAATGGCAAGATGGT
TTTGATTTTTCGGAGTCTAAACACTACTTTTACAGGTGCACCTGCATTTC
TCAATGAACGATAAAAGACGTCGGACTCTCTTCCCCGATATTCAACGAAG
ATTTTGGTATCTTCAATTATGTTATTCTTAACCTCTTTTTCGGCATCATT
ATCATTTTCTTGTGGTGGATTACGTAACTTTTCAAGCGTTTTTCAAATTA
TTGGCTCATAGAACTTTGATGGGTATTGATTATTTTTCAAGATTCTACGA
GCTTTTATAAGACTTTCATCAAGGAGTTCTAGTGAAATACAAGATCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002408XLOC_002408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004328-exon-sc0000041-1491911889:419087..419783TCONS_00004328-exon-sc0000041-1491911889:419087..419783Clytia hemisphaericaexon
TCONS_00004328-exon-sc0000041-1510915933:419087..419783TCONS_00004328-exon-sc0000041-1510915933:419087..419783Clytia hemisphaericaexon
TCONS_00004328-exon-sc0000041-1575043694:419087..419783TCONS_00004328-exon-sc0000041-1575043694:419087..419783Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:419087..419783 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.119298	0.19708	0.512149	0.723002	0.606963	0.47626	0.467813	0.692697	0.368217	0.455306	0.0908953	0.252787	0.0576273	0.401701	0	0	0	0	0	0	0	0	0.0833567	0	0.244339	0.670389	0.0996865	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004328 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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