TCONS_00004320 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004320
Unique NameTCONS_00004320
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004320 ID=TCONS_00004320|Name=TCONS_00004320|organism=Clytia hemisphaerica|type=transcript|length=770bp
CGTCAAGGGAGAGGCAAAGCTTAATAATCCTGGCATAAAGAAATCAGGCG
AAATCCATCTCgtcttgaaaagctttgacttACGCCAATATTTTACTTTA
TATCTGTTCCTTACGCCAATACGCCAAAAGTAATCATGCTGCCTCACTCC
GAATATATTTGGCATACTGTGCACTATTTCTAGCCTGGTACTACTTTCAT
AGGGGACcccaaaatcaaaacttttgcaaatatgtgactccccaagcgat
ttaaagtacctgaaaatgggACCGGTCTTTAGACGGTCTTTTGAGGGCCG
GTAAATGACCGGTAAAATTTTACCAAAAGGCCGCTACGAGTTTAGGGGAC
CAGCCCCGATCGCTCGGTTGACATCCTTTTACAACATTTTTCTGATGTAA
TTGTTACTAAAAATCACTAACTAGCGGCCCGGACCGGTCTAGCGAACGGC
CCGGACCGGTCCAACGATCGACCACGAACGTCTAGAAGCGGCCACAACCG
TTAGAGATTACATTTCTAGAAAGTCTGGAGGccgatctaaaaaaaaaaat
tgaccgcCACTAGACCGCTCGTAATACCGGACCAAGACCGGtctgatttt
caggtactttaaatcgcttgggaagtcacatattgcctccccagtttgcc
cCAATTTTGGTcaacccaccacgctactgcacATACCCGAGATCTTTTGT
AAAATCTGGTTACCATTTTGACCAGTTTTCACCAGAAATATCAATTTTAG
AGAAATTCATTCAATATTAA
Run BLAST on NCBI

transcript from alignment at sc0000041:212719..213488

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004320 ID=TCONS_00004320|Name=TCONS_00004320|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at sc0000041:212719..213488 (Clytia hemisphaerica)
TTAATATTGAATGAATTTCTCTAAAATTGATATTTCTGGTGAAAACTGGT
CAAAATGGTAACCAGATTTTACAAAAGATCTCGGGTATgtgcagtagcgt
ggtgggttgACCAAAATTGgggcaaactggggaggcaatatgtgacttcc
caagcgatttaaagtacctgaaaatcagaCCGGTCTTGGTCCGGTATTAC
GAGCGGTCTAGTGgcggtcaatttttttttttagatcggCCTCCAGACTT
TCTAGAAATGTAATCTCTAACGGTTGTGGCCGCTTCTAGACGTTCGTGGT
CGATCGTTGGACCGGTCCGGGCCGTTCGCTAGACCGGTCCGGGCCGCTAG
TTAGTGATTTTTAGTAACAATTACATCAGAAAAATGTTGTAAAAGGATGT
CAACCGAGCGATCGGGGCTGGTCCCCTAAACTCGTAGCGGCCTTTTGGTA
AAATTTTACCGGTCATTTACCGGCCCTCAAAAGACCGTCTAAAGACCGGT
cccattttcaggtactttaaatcgcttggggagtcacatatttgcaaaag
ttttgattttgggGTCCCCTATGAAAGTAGTACCAGGCTAGAAATAGTGC
ACAGTATGCCAAATATATTCGGAGTGAGGCAGCATGATTACTTTTGGCGT
ATTGGCGTAAGGAACAGATATAAAGTAAAATATTGGCGTaagtcaaagct
tttcaagacGAGATGGATTTCGCCTGATTTCTTTATGCCAGGATTATTAA
GCTTTGCCTCTCCCTTGACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002400XLOC_002400Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004320-exon-sc0000041-1491911889:212719..213488TCONS_00004320-exon-sc0000041-1491911889:212719..213488Clytia hemisphaericaexon
TCONS_00004320-exon-sc0000041-1510915933:212719..213488TCONS_00004320-exon-sc0000041-1510915933:212719..213488Clytia hemisphaericaexon
TCONS_00004320-exon-sc0000041-1575043694:212719..213488TCONS_00004320-exon-sc0000041-1575043694:212719..213488Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:212719..213488 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.812225	0.534029	0.746569	0.826067	0.900831	0.925497	0.77934	1.05144	1.48253	1.03984	1.12889	2.67363	1.1785	0.90958	0.939014	0.979411	0.350748	1.25277	1.17151	1.58628	2.00763	2.17691	0.319499	0.292427	0.530214	1.00137	1.33154	1.19552	1.19781	1.14423
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004320 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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