TCONS_00004317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004317
Unique NameTCONS_00004317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004317 ID=TCONS_00004317|Name=TCONS_00004317|organism=Clytia hemisphaerica|type=transcript|length=244bp
CTGTATATAACATTAAATATTTTGGATTGTTTCTCATTGATGCAAATAAG
AGAtagccgagtggtctaaggcgtctaTGGCTTGTACTAGTGACTCCTGG
TTCAAACCCCCTCTGCTActcaagtcttgttcagttcatatttttattcg
ctgggccttcatgccctctgggcttcttgttttgaaattaaacaCCCATC
TACATTAGGCAATTTTAATTTCTGACCtgacttttttctctttt
Run BLAST on NCBI

transcript from alignment at sc0000041:122764..123007

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004317 ID=TCONS_00004317|Name=TCONS_00004317|organism=Clytia hemisphaerica|type=transcript|length=244bp|location=Sequence derived from alignment at sc0000041:122764..123007 (Clytia hemisphaerica)
aaaagagaaaaaagtcaGGTCAGAAATTAAAATTGCCTAATGTAGATGGG
tgtttaatttcaaaacaagaagcccagagggcatgaaggcccagcgaata
aaaatatgaactgaacaagacttgagTAGCAGAGGGGGTTTGAACCAGGA
GTCACTAGTACAAGCCAtagacgccttagaccactcggctaTCTCTTATT
TGCATCAATGAGAAACAATCCAAAATATTTAATGTTATATACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002397XLOC_002397Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004317-exon-sc0000041-1491911889:122764..123007TCONS_00004317-exon-sc0000041-1491911889:122764..123007Clytia hemisphaericaexon
TCONS_00004317-exon-sc0000041-1510915933:122764..123007TCONS_00004317-exon-sc0000041-1510915933:122764..123007Clytia hemisphaericaexon
TCONS_00004317-exon-sc0000041-1575043694:122764..123007TCONS_00004317-exon-sc0000041-1575043694:122764..123007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:122764..123007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.64506	0	0	3.41245	5.10019	2.16886	4.06092	1.83034	0	1.70912	1.12351	3.03199	6.89386	2.0588	2.95996	1.67054	1.0964	4.37139	5.31062	1.63105	0	0.96712	0	5.43366	1.61647	0	0	0	0.953839
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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