TCONS_00004316 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004316
Unique NameTCONS_00004316
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004316 ID=TCONS_00004316|Name=TCONS_00004316|organism=Clytia hemisphaerica|type=transcript|length=414bp
tttttgaatttgctAAAATTACCTTCCTGGTAAATCAAATGTTGTAGTTT
TTTATAATTGTAAAGAAATTTCACTCAAAGATCACTCATCTCTGCCCTGT
TTAATTTGTAAAATTGGCTAgcgaaattttgatgattttcataCAGTACA
AGGCATGTAGGTGCTGACTCCATTGTACGAGTGAAAGTAGATTTTTGTTA
TTCAATCCCGGGTGAAAATTGTTTATGTTGGTTAGGGTCAggatcagtta
gggtcagggttggagttCGAGAGCCAAAATAGGGTTGGGAGTAGCATTGT
TAGGTAAATATAGGCCTCTAGGACCTGGTAAGGATACCCCTAGGGTTGGG
GCTAGCCCTGGTATGTTAATatatcgccgtgtcaattcaagactgACTTa
agttcatttttttg
Run BLAST on NCBI

transcript from alignment at sc0000041:122190..122603

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004316 ID=TCONS_00004316|Name=TCONS_00004316|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at sc0000041:122190..122603 (Clytia hemisphaerica)
caaaaaaatgaacttAAGTcagtcttgaattgacacggcgatatATTAAC
ATACCAGGGCTAGCCCCAACCCTAGGGGTATCCTTACCAGGTCCTAGAGG
CCTATATTTACCTAACAATGCTACTCCCAACCCTATTTTGGCTCTCGaac
tccaaccctgaccctaactgatccTGACCCTAACCAACATAAACAATTTT
CACCCGGGATTGAATAACAAAAATCTACTTTCACTCGTACAATGGAGTCA
GCACCTACATGCCTTGTACTGtatgaaaatcatcaaaatttcgcTAGCCA
ATTTTACAAATTAAACAGGGCAGAGATGAGTGATCTTTGAGTGAAATTTC
TTTACAATTATAAAAAACTACAACATTTGATTTACCAGGAAGGTAATTTT
agcaaattcaaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002396XLOC_002396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004316-exon-sc0000041-1491911889:122190..122603TCONS_00004316-exon-sc0000041-1491911889:122190..122603Clytia hemisphaericaexon
TCONS_00004316-exon-sc0000041-1510915933:122190..122603TCONS_00004316-exon-sc0000041-1510915933:122190..122603Clytia hemisphaericaexon
TCONS_00004316-exon-sc0000041-1575043694:122190..122603TCONS_00004316-exon-sc0000041-1575043694:122190..122603Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:122190..122603 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.173062	0.337526	0.3919	0.766825	1.16692	0.737693	0.889995	1.2498	1.31253	0.541925	2.63003	0.691551	1.72647	1.19531	0.589622	0.949133	0.129917	0.266322	0.367938	0.577531	0.669305	0.734543	0.19843	0	2.60133	1.16081	0.94921	0.759767	0.384171	0.587114
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004316 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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