TCONS_00004313 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004313
Unique NameTCONS_00004313
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004313 ID=TCONS_00004313|Name=TCONS_00004313|organism=Clytia hemisphaerica|type=transcript|length=601bp
GCTCAACCCACAGCTGTCAACGCAGAGCCACCTGCGGCTATCATCGCAGA
GCCACCTGCGGTCGTCAACAAAGAGCAGTCAGTTGTTCGTGAAACTGTCT
CTCCACGACGCTCATCACGCATACGTCAACCAAGAAAGGTGTACGAGCCT
GAAACTGGTCGATACGTTGTTCCATGATGAAAGTGATGAAACGAACTGTA
TAATTGCCACGTTGATGTGACATTGACTTTCTTGATGTTTATTGATGCTT
GACGTTTTCCGTCTGATTGAACTATACGAGGGACTTTTGATACTCTCGGT
GCTTTTAGAGCATGGCATTAGTTTATTTGCTATATGAACTGTTACAGGAC
ACTGACTTGTCCTTGATACATTATGAGAGTTTCATTCTCTCTGTGCTCTT
ATAGCACCTGTTGATTGTATTGATTTTTGTTCGTTTTTTGTTCGTTCGTT
CCCAGCAGGACCTGCTGTGATCTGGGGGGAGTTGTTGGGATATTAGGTAT
ATTCATTTATTCATTTATTCAGAGCTTATGTTGTAACTATCTTTTATTAT
CGTTTAGATACAAAACAACATTCTTAAAGATAAAAACTAATTAAGAATCA
A
Run BLAST on NCBI

transcript from alignment at sc0000041:3396..3996

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004313 ID=TCONS_00004313|Name=TCONS_00004313|organism=Clytia hemisphaerica|type=transcript|length=601bp|location=Sequence derived from alignment at sc0000041:3396..3996 (Clytia hemisphaerica)
TTGATTCTTAATTAGTTTTTATCTTTAAGAATGTTGTTTTGTATCTAAAC
GATAATAAAAGATAGTTACAACATAAGCTCTGAATAAATGAATAAATGAA
TATACCTAATATCCCAACAACTCCCCCCAGATCACAGCAGGTCCTGCTGG
GAACGAACGAACAAAAAACGAACAAAAATCAATACAATCAACAGGTGCTA
TAAGAGCACAGAGAGAATGAAACTCTCATAATGTATCAAGGACAAGTCAG
TGTCCTGTAACAGTTCATATAGCAAATAAACTAATGCCATGCTCTAAAAG
CACCGAGAGTATCAAAAGTCCCTCGTATAGTTCAATCAGACGGAAAACGT
CAAGCATCAATAAACATCAAGAAAGTCAATGTCACATCAACGTGGCAATT
ATACAGTTCGTTTCATCACTTTCATCATGGAACAACGTATCGACCAGTTT
CAGGCTCGTACACCTTTCTTGGTTGACGTATGCGTGATGAGCGTCGTGGA
GAGACAGTTTCACGAACAACTGACTGCTCTTTGTTGACGACCGCAGGTGG
CTCTGCGATGATAGCCGCAGGTGGCTCTGCGTTGACAGCTGTGGGTTGAG
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002393XLOC_002393Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004313-exon-sc0000041-1491911889:3396..3996TCONS_00004313-exon-sc0000041-1491911889:3396..3996Clytia hemisphaericaexon
TCONS_00004313-exon-sc0000041-1510915933:3396..3996TCONS_00004313-exon-sc0000041-1510915933:3396..3996Clytia hemisphaericaexon
TCONS_00004313-exon-sc0000041-1575043694:3396..3996TCONS_00004313-exon-sc0000041-1575043694:3396..3996Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:3396..3996 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11434	0.216813	0.689902	0.701782	0	0	0.163117	0	0.710457	0.421363	1.15689	0.311932	1.00613	0.537101	0.918833	1.1438	0.679413	0.480829	0.933229	0.503375	0.828632	0.523215	0.103771	0.471713	0.669409	0.12877	1.21111	2.02371	0.348907	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004313 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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