TCONS_00004293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004293
Unique NameTCONS_00004293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004293 ID=TCONS_00004293|Name=TCONS_00004293|organism=Clytia hemisphaerica|type=transcript|length=1797bp
CAAAGgtttgattttttccttatattttagTCAAAAACACCCTCTAACAA
ACAAGAAATTTGTCTTTTAGATGTTATTCAGAGATCGGATATAAACGCCG
CCAGCAACGAATTTCAATCGGTAGCGGATACCAATGGAAAGGCGTTATCA
TCCATGAGATTCTTCACGCTGTTGGTTTCTACCACGAACAATCGAGATTG
GACAGAGATCAATATCTTCATATCAACTGGGATAACATCGATACAAGAAA
CAAAAGAAACTTCCAGAAATACGATCGCGGTGTTGCTGAATCCTTCGGCG
AAAAATACGACAAAGGATCAGTCATGCAATATGGAAACTACGCGTTTGCG
ATCAACATACGTCTGATGACCATTGTCTCCAAGTCTGATGCTAAAGAAAG
GTTGGGGCAACGTAGAGGGATGTCATCAAGCGATATCCGACAATTGAACA
TGAGATATGGATGTGGTGACGTCACTCCACCGCCCACAACCACCACCACA
GTGGATCCAAGTTGTGTCGATAAGGAAAGATATTGTAAAAGGAGTGACAT
CGACTTATACTGCCATAAAAGTTTTATGGTTAGGGACAGTTGTCAACGCT
CTTGCAACAATTGTCCACAAAAGCCAGCGACAACAACTTCTAAAATAATA
ACCACTCCAACCACAACATCAACCACTCCAGctacgacaacgaccacccc
taAAACGACCACGACCGCGCCAACAACAACTACAACGACCACCACTTCAA
CTACTACTTCTCCTACCACGACCATACCAACAACTACTACGACAACCACC
GCTAGAACGACAACACGTCACAATTCAAATCGACCACCCCTACTGCTAAA
ACGACGACCATCCCTTCTGCTATAACGACGACCACCCCTTCCACTAAAAT
GACGACCACTCCTGCTAAAACGACGACCACCCCTACTGCTAAAACGACGA
CCACCCCTACTGCTAAAACGACGGCCATCCCTTCTGCTAAAACGACGGCC
ATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCTAAAACGACGACCAC
CCCTACTGCTAAAACGACGACCATTCCTTCTGCCAAAACGACGGCCATCC
TTTCTGCTAAAACGACGGCCATCCCTTCTGCTAAAACGGCGACCATCCCT
TCTGCTAAAACGACGACCACTCCTTCTGCTAAAACGACGACCACTCCTTC
TGCTAAAACGACGACCATCCCTTCTGCTAAAACGACGACCATCCCTTCTG
CTAAAACGACGGCCATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCT
AAAACGACGGCCATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCTAA
AACGACGGCCATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCTAAAA
CGACGGCCATCCCTTCTGCTAAAACGACGACCACCCCTACTGCTAAAACG
ACGACCATTCCTTCTGCCAAAACGACGGCCATCCCTTCTGCTAAAACGAC
GGCCATCCCTTCTGCTAAAACGACGACCACCCCTACTGCTAAAACGACGA
CCATTCCTTCTGCCAAAACGACGGCCATCCCTTCTGCTAAAACGACGGCC
ATCCCTTCTGCTAAAACGGCGACCATCCCTTCTGCTAAAACGACGACCAC
TCCTACCGCTAAAACGACGACCACTCCTACCGCTAAAACGACTACCACAT
CTTCGACGACAACAACGACATTGACAACACCAAAAACAAAGGGATGTGAA
GACAAAAAGAGTTGTTGCGAAGAGTTGGCTTTAGGAGGACTTTGCAA
Run BLAST on NCBI

transcript from alignment at sc0000041:415362..417633-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004293 ID=TCONS_00004293|Name=TCONS_00004293|organism=Clytia hemisphaerica|type=transcript|length=2272bp|location=Sequence derived from alignment at sc0000041:415362..417633- (Clytia hemisphaerica)
CAAAGGTTTGATTTTTTCCTTATATTTTAGTCAAAAACACCCTCTAACAA
ACAAGAAATTTGTCTTTTAGATGTTATTCAGAGATCGGATATAAACGCCG
CCAGCAACGAATTTCAATCGGTAGCGGATACCAATGGAAAGGCGTTATCA
TCCATGAGATTCTTCACGCTGTTGGTTTCTACCACGAACAATCGAGATTG
GACAGAGATCAATATCTTCATATCAACTGGGATAACATCGATACAAGTAA
GAACTTTCTCTAAAATATCCATTTCGTTTTGCATTTAAATCTAATCTATA
AACATGTCATACCATTTCCATATAAAGTCTACTAAAGATCGGATGCTCTC
AGAGAGGATTGACGAATCAAATTATCAAACCATTTATTTTACAATTTCAG
GAAACAAAAGAAACTTCCAGAAATACGATCGCGGTGTTGCTGAATCCTTC
GGCGAAAAATACGACAAAGGATCAGTCATGCAATATGGAAAGTAAGTAGA
CTTTTAAATCGAAAGTTCGAAAATTATCATTTCTACATGACGTTCTAAAG
GCCATGCATTTCTACAATTCGAAACAAATTCGATAGGATGGCGCATATTG
AGGTCTTTATTGGCTTAAACTCAAAAAAGCCGTTGCCAGCTGCTATACCG
CATCGACATAAAAGAAGGAACCTAAAATAAAGTATAATGAACTTGAATTT
GACCTAAAGTTTCGACACAACCAACTATAATGTTTCAAATAAAAAAATAC
TCATTAATAAATCCTTTATCAGACAAGCTCAAAAATATTTCAAATTTTTC
CCATCTTTCCAGCTACGCGTTTGCGATCAACATACGTCTGATGACCATTG
TCTCCAAGTCTGATGCTAAAGAAAGGTTGGGGCAACGTAGAGGGATGTCA
TCAAGCGATATCCGACAATTGAACATGAGATATGGATGTGGTGACGTCAC
TCCACCGCCCACAACCACCACCACAGTGGATCCAAGTTGTGTCGATAAGG
AAAGATATTGTAAAAGGAGTGACATCGACTTATACTGCCATAAAAGTTTT
ATGGTTAGGGACAGTTGTCAACGCTCTTGCAACAATTGTCCACAAAAGCC
AGCGACAACAACTTCTAAAATAATAACCACTCCAACCACAACATCAACCA
CTCCAGCTACGACAACGACCACCCCTAAAACGACCACGACCGCGCCAACA
ACAACTACAACGACCACCACTTCAACTACTACTTCTCCTACCACGACCAT
ACCAACAACTACTACGACAACCACCGCTAGAACGACAACACGTCACAATT
CAAATCGACCACCCCTACTGCTAAAACGACGACCATCCCTTCTGCTATAA
CGACGACCACCCCTTCCACTAAAATGACGACCACTCCTGCTAAAACGACG
ACCACCCCTACTGCTAAAACGACGACCACCCCTACTGCTAAAACGACGGC
CATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCTAAAACGACGGCCA
TCCCTTCTGCTAAAACGACGACCACCCCTACTGCTAAAACGACGACCATT
CCTTCTGCCAAAACGACGGCCATCCTTTCTGCTAAAACGACGGCCATCCC
TTCTGCTAAAACGGCGACCATCCCTTCTGCTAAAACGACGACCACTCCTT
CTGCTAAAACGACGACCACTCCTTCTGCTAAAACGACGACCATCCCTTCT
GCTAAAACGACGACCATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGC
TAAAACGACGGCCATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCTA
AAACGACGGCCATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCTAAA
ACGACGGCCATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCTAAAAC
GACGACCACCCCTACTGCTAAAACGACGACCATTCCTTCTGCCAAAACGA
CGGCCATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCTAAAACGACG
ACCACCCCTACTGCTAAAACGACGACCATTCCTTCTGCCAAAACGACGGC
CATCCCTTCTGCTAAAACGACGGCCATCCCTTCTGCTAAAACGGCGACCA
TCCCTTCTGCTAAAACGACGACCACTCCTACCGCTAAAACGACGACCACT
CCTACCGCTAAAACGACTACCACATCTTCGACGACAACAACGACATTGAC
AACACCAAAAACAAAGGGATGTGAAGACAAAAAGAGTTGTTGCGAAGAGT
TGGCTTTAGGAGGACTTTGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002383XLOC_002383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004293-exon-sc0000041-1575043694:417388..417633TCONS_00004293-exon-sc0000041-1575043694:417388..417633Clytia hemisphaericaexon
TCONS_00004293-exon-sc0000041-1575043694:417143..417233TCONS_00004293-exon-sc0000041-1575043694:417143..417233Clytia hemisphaericaexon
TCONS_00004293-exon-sc0000041-1575043694:415362..416821TCONS_00004293-exon-sc0000041-1575043694:415362..416821Clytia hemisphaericaexon
TCONS_00004293-exon-sc0000041-1510915933:417388..417633TCONS_00004293-exon-sc0000041-1510915933:417388..417633Clytia hemisphaericaexon
TCONS_00004293-exon-sc0000041-1510915933:417143..417233TCONS_00004293-exon-sc0000041-1510915933:417143..417233Clytia hemisphaericaexon
TCONS_00004293-exon-sc0000041-1510915933:415362..416821TCONS_00004293-exon-sc0000041-1510915933:415362..416821Clytia hemisphaericaexon
TCONS_00004293-exon-sc0000041-1491911889:417388..417633TCONS_00004293-exon-sc0000041-1491911889:417388..417633Clytia hemisphaericaexon
TCONS_00004293-exon-sc0000041-1491911889:417143..417233TCONS_00004293-exon-sc0000041-1491911889:417143..417233Clytia hemisphaericaexon
TCONS_00004293-exon-sc0000041-1491911889:415362..416821TCONS_00004293-exon-sc0000041-1491911889:415362..416821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:415362..417633 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.09915	1.12253	0.291512	0.215268	0.944452	0.84434	0.696673	1.08323	0.750821	0.697036	0.559613	0.683508	0.939692	0.809939	0.349417	0.874896	0.34648	0.79095	0.175922	0.281821	0.272269	0.406657	1.08985	0.831172	1.36301	1.40166	0.228904	0.130774	0.825856	0.91766
Blast
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BLAST of TCONS_00004293 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.363e-25
Identity = 57/132 (43.18%), Postives = 78/132 (59.09%), Query Frame = 3 
Query:   72 CYSEIGYKRRQQRISIGSGYQWKGVIIHEILHAVGFYHEQSRLDRDQYLHINWDNIDTRNKRNFQKYDRGVAESFGEKYDKGSVMQYGNYAFAINIRLMTIVSK-SDAKERLGQRRGMSSSDIRQLNMRYGC 464
            C+SE+G +   Q ISIG G  +K +I HEILHA+GFYHEQSR DRD Y++I WD I +  + NF  YD  +       YD  S+M Y  ++F  N  + TI +K  +    +GQR   S+ D+ +LN  Y C
Sbjct:  128 CWSEVGDQHVGQNISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMYNC 259
The following BLAST results are available for this feature:
BLAST of TCONS_00004293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A1.363e-2543.18Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
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