|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004288 ID=TCONS_00004288|Name=TCONS_00004288|organism=Clytia hemisphaerica|type=transcript|length=4110bp
ATAAATAATTTGATAATTTGTTGTAATATCTTAATTACAGGTTTGATAAA
GGAATGAACGAATTAATTTGATGGAAATTGGATATTTTTAGTATAATTTT
TCAGCGAATAACAAGTTATATTGGataaactgaataaaaaatcgaaaaaa
aacattccatTTAGAAATCTGAATAAATTCACAAGAGACATTCATAAAAT
TGCAAGTGGTTGAATATTACAAATCGGAATTAAAGACTCGTGGGTATGTG
ATAATGAAAAGGGCATTCAGCGAACAGAAAGGTGAAAACTTCTCAACCGA
CAAAAATCACAGATCTTTTTATCACGTAACTCGAGAGAAGAGGAGGGAAA
AGAGCAATGTTGACTTTTATCGCCATATAAAGTCGATATGAGGTAGTGAT
AAGTTGAAAGAATCTTTCTGGTGGTTTTGACTGATGACGTTCaggttgtt
tgttttgatgaagTTTTATAAAGTCAACATGACGTTCAAAGATGGAGAAG
CAACATTCAAAGGACTCGTTATTTTCATCATATTGGAAGGATTCACCATC
GTGTTTTTAAACACCACAGCCATCTTCACGATGGTCTACAAGTTACGAAG
AAACTCAAAGACATCGAGAAGAGGGCGGAAGATGACGCCCGATAAACAAA
TCATTATCAGTTTATGTTTAACAAATTTCACGTCAGGGGCGGCTGTGATA
GTGGAGTTCGCTTGTTTTGCTGCAGGTGAACCAATCTCTTCCAAGAAGAT
CTTAGTCCTGGCGTTTATCATCTTATTCAGTTTGATTGCTTCGTTACTTC
ACGTTATTCTATTATCATTGGAACGCTTCATGGCTCTCAAATTTCCCTTC
CGACATCGTGAAGTCAAAAAGAGATCAACTGTTCTAGCATTGGTGTTTGT
GTGGGTTATCAGTGCATTGCCAACGTTAACCATATTCATCAACAGATCTG
GAGCATTGGAAATCATCTCCATCATAATGATCATTACTGACTTCTTCCTC
ATCCTATCCAGCATCTACATCATCAGTGTTACCAAGAAAGTGTTGAGTGG
ACAAAACGCTGGTATGATTGGTGGTTCAAAAACTGAATCACGTGATTATG
AGAAAGAGATCNAGGGTAGAAGCGAATCTTTAACTTTTCtcagaaaagaa
aaagtgaagccttaagatatACGCcgtttttttttgatgacgtattGAAT
TTagtggtttctttgttttcgagttatatattttttgaaatcaagcggca
aattttaatttcaatctgGTGATTGTATTAAAACCACGCGGACCGCTCAA
GGCCACgcaacttaggtaggatttagTGGTATCAAATCCTTCTTaagaga
ttcgcttctagccctttgggcttttacttcattggtgTGTGTCTCATCAC
TTATAAATTTATTATAACATGGTGTAAATTTCTATTTAAATATTATAGag
ttgaaaattatcaaattttataaattcgCTTAAAACACTCCAGTCAACAT
GACGTTCAAAGATGGAGAAGCAACATTCAAAGGACTCGTTATTTTCATCA
TATTGGAAGGATTCACCATCGTGTTTTTAAACACCACAGCCATCTTCACG
ATGGTCTACAAGTTACGAAGAAACTCAAAGACATCGAGAAGAGGGCGGAA
GATGACGCCCGATAAACAAATCATTATCAGTTTATGTTTAACAAATTTCA
CGTCAGGGGCGGCTGTGATAGTGGAGTTCGCTTGTTTTGCTGCAGGTGAA
CCAATCTCTTCCAAGAAGATCTTAGTCCTGGCGTTTATCATCTTATTCAG
TTTGATTGCTTCGTTACTTCACGTTATTCTATTATCATTGGAACGCTTCA
TGGCTCTCAAATTTCCCTTCCGACATCGTGAAGTCAAAAAGAGATCAACT
GTTCTAGCATTGGTGTTTGTGTGGGTTATCAGTGCATTGCCAACGTTAAC
CATATTCATCAACAGATCTGGAGCATTGGAAATCATCTCCATCATAATGA
TCATTACTGACTTCTTCCTCATCCTATCCAGCATCTACATCATCAGTGTT
ACCAAAAAAGTGTTGAGTGGACAAAACGCTGGTATGATTGGTGGTTCAAA
AACTGAATCACGTGATTATGAGAAAGAGATTACACGCTTCTGGTCTACCA
TTATGGTTGCTTATATCTTATTCACCATACCCCCTGTTTTGATCATGATC
TTCAAAGGTGGAGAAGCTGTTTCATTGTACAGTGGAGCACGTGTAGATGG
AGTTTTAATGATTCTCATTCTACTAAAAGCAATTGCTGACCCTTTGTTGT
ATATTTTGGCTAATCAAATGAATTGTTGTAAACActcgaaagattcgaaa
tctTTAGAAGCCTCAAATTCGGTACAAAAGACTTATGATACAAATGCAAC
TTCTGCTTATGATTCAAAACTGTGAGAAATTGCAAAGTTCTTTTTGCTAG
TGGGAGTaatagtttttttgaaaacatgtagtgtaaataaattaaaacaa
tatcaaaacaataaaaaataccTGGGTATTAAGCAAAGATAGCTATTGAG
TCAGTTTGTTACCTTTCCAACGTCTCTCTAGGGTTACAAAAGTAGCATAG
TGTCAAAataatctctctaagggtcagctTTAGGAAAGCACGTATCTGAG
GGCATAgacgtagcgagataccctgcaaaatttatgggtgagagcggttt
ttacgacatgtaattattgtctttgttttatcaaaagatagtGAATAtat
cataaacgtctgcactccctcataaattttgcagtgtatctcgctacgcc
tatggaGGGGGTACTTTTTGTCTCTCTAACGATCACATTTTGCTGAAATT
TNCTGTTTTGATCATGATCTTCAAAGGTGGAGAAGCTGTTTCATTGTACA
GTGGAGCACGTGTAGATGGAGTTTTAATGATTCTCATTCTACTAAAAGCA
ATTGCTGACCCTTTGTTGTATATTTTGGCTAATCAAATGAATTGTTGTAA
ACActcgaaagattcgaaatctTTAGAAGCCTCAAATTCGGTACAAAAGA
CTTATGATACAAATGCAACTTCTGCTTATGATTCAAAACTGTGAGAAATT
GCAAAGTTCTTTTTGCTAGTGGGAGTaatagtttttttgaaaacatgtag
tgtaaataaattaaaacaatatcaaaacaataaaaaataccTGGGTATTA
AGCAAAGATAGCTATTGAGTCAGTTTGTTACCTTTCCAACGTCTCTCTAG
GGTTACAAAAGTAGCATAGTGTCAAAataatctctctaagggtcagctTT
AGGAAAGCACGTATCTGAGGGCATAgacgtagcgagataccctgcaaaat
ttatgggtgagagcggtttttacgacatgtaattattgtctttgttttat
caaaagatagtGAATAtatcataaacgtctgcactccctcataaattttg
cagtgtatctcgctacgcctatggaGGGGGTACTTTTTGTCTCTCTAACG
ATCacattttgctgaaatttaacCCCAGGTACAATAATCAATAttataaa
aagctttaaaaaacttTATCATTAATAAAAATGACCATTCTGAAGTGAAT
TTGCGAACATTGACAAGTTGAGGTGTCCCATTCACCTTTCACTACCTTTT
GGGATAAACTGTTGTACAGTGTCTTCACCTGTTCCACATAATAAACAGTT
CATCGAATATTCTTGCTCTTCATCAATCACCGAGAAAGTATACTCATGTT
CAGCAATGACATGCGCACAACTGTCACACGTGTGAATGTAGGttatattt
tcttcttcatcatcttcTTTCAATTGTTTATTCGAAATCTTGATCAATTC
TCGCTTCCCACACTCTTTGCAACCTATCAAAAAGCAAATTCTTAATATAC
CTTcaggggaagaaattttggcgggaatttactttggcggatggcgggaa
aaattaaaatttagtgGGAAATTCTAAATTCTATCTGACCTCATTAAAAA
GTTTATATAGTGTTTTAGACATTTATCGCTACTTTAATAGGTAAAGTCCA
TTCACTTTTTAATGGacgtattgaaaaaaaaaaattttcaccgctttaaa
atatatttac Run BLAST on NCBI transcript from alignment at sc0000041:400615..405253- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004288 ID=TCONS_00004288|Name=TCONS_00004288|organism=Clytia hemisphaerica|type=transcript|length=4639bp|location=Sequence derived from alignment at sc0000041:400615..405253- (Clytia hemisphaerica)
ATAAATAATTTGATAATTTGTTGTAATATCTTAATTACAGGTTTGATAAA
GGAATGAACGAATTAATTTGATGGAAATTGGATATTTTTAGTATAATTTT
TCAGCGAATAACAAGTTATATTGGATAAACTGAATAAAAAATCGAAAAAA
AACATTCCATTTAGAAATCTGAATAAATTCACAAGAGACATTCATAAAAT
TGCAAGTGGTTGAATATTACAAATCGGAATTAAAGACTCGTGGGTATGTG
ATAATGAAAAGGGCATTCAGCGAACAGAAAGGTGAAAACTTCTCAACCGA
CAAAAATCACAGATCTTTTTATCACGTAACTCGAGAGAAGAGGAGGGAAA
AGAGCAATGTTGACTTTTATCGCCATATAAAGTCGATATGAGGTAGTGAT
AAGTTGAAAGAATCTTTCTGGTGGTTTTGACTGATGACGTTCAGGTTGTT
TGTTTTGATGAAGTTTTATAAAGGTAAACAAACCAAAGAGGAAGAGAGTC
GCTTTGGAAACTTTATTTGAATCTCATTTTTAAAAAATACATCTCTCGTT
CATTACGAGTGAGACGAAGAGGCACTTGTGTCTTGATTTCTCGGGTATGT
ATTAATGAAGTGAAAGCCCGAAGGGTAGAAGCGAATCTTTAACTTTTCTC
AGAAAAGAAAAAGTGAAGCCTTAAGATATACGCCGTTTTTTTTTGATGAC
GTATTGAATTTAGTGGTTTCTTTGTTTTCGAGTTATATATTTTTTGAAAT
CAAGCGGCAAATTTTAATTTCAATCTGGTGATTGTATTAAAACCACGCGG
ACCGCTCAAGGCCACGCAACTTAGGTAGGATTTAGTGGTATCAAATCCTT
CTTAAGAGATTCGCTTCTAGCCCTTTGGGCTTTTACTTCATTGGTGTGTG
TCTCATCACTTATAAATTTATTATAACATGGTGTAAATTTCTATTTAAAT
ATTATAGAGTTGAAAATTATCAAATTTTATAAATTCGCTTAAAAGACTCC
AGTCAACATGACGTTCAAAGATGGAGAAGCAACATTCAAAGGACTCGTTA
TTTTCATCATATTGGAAGGATTCACCATCGTGTTTTTAAACACCACAGCC
ATCTTCACGATGGTCTACAAGTTACGAAGAAACTCAAAGACATCGAGAAG
AGGGCGGAAGATGACGCCCGATAAACAAATCATTATCAGTTTATGTTTAA
CAAATTTCACGTCAGGGGCGGCTGTGATAGTGGAGTTCGCTTGTTTTGCT
GCAGGTGAACCAATCTCTTCCAAGAAGATCTTAGTCCTGGCGTTTATCAT
CTTATTCAGTTTGATTGCTTCGTTACTTCACGTTATTCTATTATCATTGG
AACGCTTCATGGCTCTCAAATTTCCCTTCCGACATCGTGAAGTCAAAAAG
AGATCAACTGTTCTAGCATTGGTGTTTGTGTGGGTTATCAGTGCATTGCC
AACGTTAACCATATTCATCAACAGATCTGGAGCATTGGAAATCATCTCCA
TCATAATGATCATTACTGACTTCTTCCTCATCCTATCCAGCATCTACATC
ATCAGTGTTACCAAGAAAGTGTTGAGTGGACAAAACGCTGGTATGATTGG
TGGTTCAAAAACTGAATCACGTGATTATGAGAAAGAGATCNAGGGTAGAA
GCGAATCTTTAACTTTTCTCAGAAAAGAAAAAGTGAAGCCTTAAGATATA
CGCCGTTTTTTTTTGATGACGTATTGAATTTAGTGGTTTCTTTGTTTTCG
AGTTATATATTTTTTGAAATCAAGCGGCAAATTTTAATTTCAATCTGGTG
ATTGTATTAAAACCACGCGGACCGCTCAAGGCCACGCAACTTAGGTAGGA
TTTAGTGGTATCAAATCCTTCTTAAGAGATTCGCTTCTAGCCCTTTGGGC
TTTTACTTCATTGGTGTGTGTCTCATCACTTATAAATTTATTATAACATG
GTGTAAATTTCTATTTAAATATTATAGAGTTGAAAATTATCAAATTTTAT
AAATTCGCTTAAAACACTCCAGTCAACATGACGTTCAAAGATGGAGAAGC
AACATTCAAAGGACTCGTTATTTTCATCATATTGGAAGGATTCACCATCG
TGTTTTTAAACACCACAGCCATCTTCACGATGGTCTACAAGTTACGAAGA
AACTCAAAGACATCGAGAAGAGGGCGGAAGATGACGCCCGATAAACAAAT
CATTATCAGTTTATGTTTAACAAATTTCACGTCAGGGGCGGCTGTGATAG
TGGAGTTCGCTTGTTTTGCTGCAGGTGAACCAATCTCTTCCAAGAAGATC
TTAGTCCTGGCGTTTATCATCTTATTCAGTTTGATTGCTTCGTTACTTCA
CGTTATTCTATTATCATTGGAACGCTTCATGGCTCTCAAATTTCCCTTCC
GACATCGTGAAGTCAAAAAGAGATCAACTGTTCTAGCATTGGTGTTTGTG
TGGGTTATCAGTGCATTGCCAACGTTAACCATATTCATCAACAGATCTGG
AGCATTGGAAATCATCTCCATCATAATGATCATTACTGACTTCTTCCTCA
TCCTATCCAGCATCTACATCATCAGTGTTACCAAAAAAGTGTTGAGTGGA
CAAAACGCTGGTATGATTGGTGGTTCAAAAACTGAATCACGTGATTATGA
GAAAGAGATTACACGCTTCTGGTCTACCATTATGGTTGCTTATATCTTAT
TCACCATACCCCCTGTTTTGATCATGATCTTCAAAGGTGGAGAAGCTGTT
TCATTGTACAGTGGAGCACGTGTAGATGGAGTTTTAATGATTCTCATTCT
ACTAAAAGCAATTGCTGACCCTTTGTTGTATATTTTGGCTAATCAAATGA
ATTGTTGTAAACACTCGAAAGATTCGAAATCTTTAGAAGCCTCAAATTCG
GTACAAAAGACTTATGATACAAATGCAACTTCTGCTTATGATTCAAAACT
GTGAGAAATTGCAAAGTTCTTTTTGCTAGTGGGAGTAATAGTTTTTTTGA
AAACATGTAGTGTAAATAAATTAAAACAATATCAAAACAATAAAAAATAC
CTGGGTATTAAGCAAAGATAGCTATTGAGTCAGTTTGTTACCTTTCCAAC
GTCTCTCTAGGGTTACAAAAGTAGCATAGTGTCAAAATAATCTCTCTAAG
GGTCAGCTTTAGGAAAGCACGTATCTGAGGGCATAGACGTAGCGAGATAC
CCTGCAAAATTTATGGGTGAGAGCGGTTTTTACGACATGTAATTATTGTC
TTTGTTTTATCAAAAGATAGTGAATATATCATAAACGTCTGCACTCCCTC
ATAAATTTTGCAGTGTATCTCGCTACGCCTATGGAGGGGGTACTTTTTGT
CTCTCTAACGATCACATTTTGCTGAAATTTNCTGTTTTGATCATGATCTT
CAAAGGTGGAGAAGCTGTTTCATTGTACAGTGGAGCACGTGTAGATGGAG
TTTTAATGATTCTCATTCTACTAAAAGCAATTGCTGACCCTTTGTTGTAT
ATTTTGGCTAATCAAATGAATTGTTGTAAACACTCGAAAGATTCGAAATC
TTTAGAAGCCTCAAATTCGGTACAAAAGACTTATGATACAAATGCAACTT
CTGCTTATGATTCAAAACTGTGAGAAATTGCAAAGTTCTTTTTGCTAGTG
GGAGTAATAGTTTTTTTGAAAACATGTAGTGTAAATAAATTAAAACAATA
TCAAAACAATAAAAAATACCTGGGTATTAAGCAAAGATAGCTATTGAGTC
AGTTTGTTACCTTTCCAACGTCTCTCTAGGGTTACAAAAGTAGCATAGTG
TCAAAATAATCTCTCTAAGGGTCAGCTTTAGGAAAGCACGTATCTGAGGG
CATAGACGTAGCGAGATACCCTGCAAAATTTATGGGTGAGAGCGGTTTTT
ACGACATGTAATTATTGTCTTTGTTTTATCAAAAGATAGTGAATATATCA
TAAACGTCTGCACTCCCTCATAAATTTTGCAGTGTATCTCGCTACGCCTA
TGGAGGGGGTACTTTTTGTCTCTCTAACGATCACATTTTGCTGAAATTTA
ACCCCAGGTACAATAATCAATATTATAAAAAGCTTTAAAAAACTTTATCA
TTAATAAAAATGACCATTCTGAAGTGAATTTGCGAACATTGACAAGTTGA
GGTGTCCCATTCACCTTTCACTACCTTTTGGGATAAACTGTTGTACAGTG
TCTTCACCTGTTCCACATAATAAACAGTTCATCGAATATTCTTGCTCTTC
ATCAATCACCGAGAAAGTATACTCATGTTCAGCAATGACATGCGCACAAC
TGTCACACGTGTGAATGTAGGTTATATTTTCTTCTTCATCATCTTCTTTC
AATTGTTTATTCGAAATCTTGATCAATTCTCGCTTCCCACACTCTTTGCA
ACCTATCAAAAAGCAAATTCTTAATATACCTTCAGGGGAAGAAATTTTGG
CGGGAATTTACTTTGGCGGATGGCGGGAAAAATTAAAATTTAGTGGGAAA
TTCTAAATTCTATCTGACCTCATTAAAAAGTTTATATAGTGTTTTAGACA
TTTATCGCTACTTTAATAGGTAAAGTCCATTCACTTTTTAATGGACGTAT
TGAAAAAAAAAAATTTTCACCGCTTTAAAATATATTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004288-exon-sc0000041-1575043694:404781..405253 | TCONS_00004288-exon-sc0000041-1575043694:404781..405253 | Clytia hemisphaerica | exon |
| TCONS_00004288-exon-sc0000041-1575043694:400615..404251 | TCONS_00004288-exon-sc0000041-1575043694:400615..404251 | Clytia hemisphaerica | exon |
| TCONS_00004288-exon-sc0000041-1510915933:404781..405253 | TCONS_00004288-exon-sc0000041-1510915933:404781..405253 | Clytia hemisphaerica | exon |
| TCONS_00004288-exon-sc0000041-1510915933:400615..404251 | TCONS_00004288-exon-sc0000041-1510915933:400615..404251 | Clytia hemisphaerica | exon |
| TCONS_00004288-exon-sc0000041-1491911889:404781..405253 | TCONS_00004288-exon-sc0000041-1491911889:404781..405253 | Clytia hemisphaerica | exon |
| TCONS_00004288-exon-sc0000041-1491911889:400615..404251 | TCONS_00004288-exon-sc0000041-1491911889:400615..404251 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000041 | supercontig | sc0000041:400615..405253 - |
Blast
BLAST of TCONS_00004288 vs. Swiss-Prot (Human)
Match: CHUR (Protein Churchill OS=Homo sapiens GN=CHURC1 PE=1 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 2.190e-21 Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = -3
Query: 3662 LIGCKECGKRELIKISNKQLKEDDEEENITYIHTCDSCAHVIAEHEYTFSVIDEEQEYSMNCLLCGTGEDTVQ 3880
GC C KR+ + I+NK LKE+D EE +TY H C +C HVIA HEYTFS++DE QEY+M CLLCG EDT+
Sbjct: 54 FTGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKNCHHVIARHEYTFSIMDEFQEYTMLCLLCGKAEDTIS 126
The following BLAST results are available for this feature:
|
