TCONS_00004285 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004285
Unique NameTCONS_00004285
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004285 ID=TCONS_00004285|Name=TCONS_00004285|organism=Clytia hemisphaerica|type=transcript|length=3224bp
cggcgatggctcagtggatagagcgctggcttccaaatctgaaggtcttt
ctttggtggtggttcgaatcccactcggtgcgataATTaggttggtcgaa
attgatggacaaatgattgacaggtatgaaaactcagtcagaaatgagaa
actaagtctcagaaactcagaaactcagacagtcagaaaagagagagaca
ggatcagagataagaaaataaaaaaaaaacatgagggTACTTTGGGTGAT
CCGATGTAACTCTTTCCTGGGTAAATTGCCTAACCGATGGATAAATTGCC
GAACAGTTAAAAAATGGTAGCCTGAGTAGCGAAAGATTTGAATTGTGGCA
ACTAAGAAATTTTCACACTGGAACAGGAAACACCTTCGCTTCTCAAATTC
GTTTAACATACCTCACGTGACAAGTTGATACAACACATTGACCACTCCCT
GTTAAGTTTgtatcgaaatctgcaacaaaaacaaaagtgatctcttctac
tgattgctttgtATTGTGGCGCTCCTTCGCGgaatgtttatcaaatttca
tcACTTCCTGATCCAGTGGTGATTGCATGTACTGCTACTTGTAAATacca
aaaattactttcaattcATTTTCTCATACAAAGAAGAAAGTTTGCACAAT
CATCATGACAACCATCACATCATGAAAAAGATGGGGTGTGGATACTCAAA
GCTTCTATCAAAACAACACAAGTCTAGTACAAAGCCCTTCGATGAAGATG
CTATGAGAGATAGACATGTTTCAACAGAATCAAAGGAAAATCCATCATCT
CAAGGTCATCAAGATGTCTCCAAAACTAGTAATCACTTTACAATACCAAG
TATTGATGATTTACCACTAAACAAAGATAGTTGCATAACTATGCATGATT
TGTACAATCTTTTAAATGATGGTGCTATGAAAATGTACATTCATGATCCA
TTTAACCTTTTGCTAATTGATGGTAGAGAACTGGATTTATATTCCACGCA
ACATGTCATAACAGCAAAACATCATTCAATCTTTGGATCAGATagcaatt
ttgttttgagactTTCAAATTATGGAATGGTGATTATTTATGGGTCAGAG
CTGCAAGTGAATAAATCGTCAACTGATTCATTGTTAAAATTGCGGGCTGA
AGTACAAGAATATGTAGCAAGTGATGTTTTAGTGTTAGTGGAAGGTTTCG
ATCAATTTCATTTGAACTACCCCTTTCTATGCACTGATAAACTCATAGAA
ACAGTTGCTGATCGAAAAGAGCTGCTGTGTTACCCATCTATGGTATTGGA
TTCTAAGCTTTTTCAAGGGCGAGGTGACCAAGCTACCAATGAGAATATTa
ttgatgttttgaaaattactCACATTGTGAATATCACCTTGGAACATCAA
AAcgcttttccaaaaaaggttAAGTATTTCCGATTGGAACTAGACGATGT
TGGGGAGTCAAACTTATTCGAACATTTCCATAAAACAtctgattttataa
atgaagCACTTTCCACGAAGATTGGTCGAGTATTAGTTCATTGCAACATG
GGTGTTAGCCGAAGCTCTACAATCACTTTAGCTTATCTCATGAAGTACAA
ACAATGGAGTCTGGATCTTGCgttcaaaaccttaaaatccaGAAGATCTT
GCGCTGCGCCTAATGATGGTTTCTTGCAACAGCTCTCTAAGTGGGAAATA
GAGATGCTGGGACAAAAACTCACTGATATCGATTCCCTGTTTTAAGTTTC
TGAAATTCTGAATTGGGTGTAGTTTTGTCCCGTTAAATTCTAGAATTCTA
GTTTAAAACACTTGCATCAGTTTGAAGTACTTGATTAGACTCTTCCTTTT
CCTTTGTTTTATCTTTTGTAGACGTATGGTCAAACCTAGTTTGTGTCGTA
AAGCTGTAGTATTTGATCGGTTTGATtggtttttattaaaattatagTTT
TGATACTTTTTCATATCTATTTAATAGAAAGTTTGTGAATAANGTCTATG
GTATTGGATTCTAAGCTTTTTCAAGGGCGAGGTGACCAAGCTACCAATGA
GAATATTattgatgttttgaaaattactCACATTGTGAATATCACCTTGG
AACATCAAAAcgcttttccaaaaaaggttAAGTATTTCCGATTGGAACTA
GACGATGTTGGGGAGTCAAACTTATTCGAACATTTCCATAAAACAtctga
ttttataaatgaagCACTTTCCACGAAGATTGGTCGAGTATTAGTTCATT
GCAACATGGGTGTTAGCCGAAGCTCTACAATCACTTTAGCTTATCTCATG
AAGTACAAACAATGGAGTCTGGATCTTGCgttcaaaaccttaaaatccaG
AAGATCTTGCGCTGCGCCTAATGATGGTTTCTTGCAACAGCTCTCTAAGT
GGGAAATAGAGATGCTGGGACAAAAACTCACTGATATCGATTCCCTGTTT
TAAGTTTCTGAAATTCTGAATTGGGTGTAGTTTTGTCCCGTTAAATTCTA
GAATTCTAGTTTAAAACACTTGCATCAGTTTGAAGTACTTGATTAGACTC
TTCCTTTTCCTTTGTTTTATCTTTTGTAGACGTATGGTCAAACCTAGTTT
GTGTCGTAAAGCTGTAGTATTTGATCGGTTTGATtggtttttattaaaat
tatagTTTTGATACTTTTTCATATCTATTTAATAGAAAGTTTGTGAATAA
CATTGAAGAATATTTTGTAAGATATAATAGCTATTTATAATGAACATTGT
GgcataatttataatttttagatATTAATGATTTTTGTATATAAAAGAAT
GTTAATTCCTTGACAGGTGATTGTTAGCTCTGGTGAAATATCAACTTCAC
TGAGAAACACTTTTGCTTTGTTGAAGTCATAAAATAATTTACTCTTCACT
CTTTCAAGCAACCAGAGATTTAAAAACATTGGCTTTTGGTttccatttat
ttatttaatagTTTAGATTTATTATTTTCTGGTCTTAAATAGTTTtcaca
aatttttatttgtttgctCTGGGTTAATCTTTCTAGCTTAGCGGGTGTTG
CtcattatttcaatttttaagatattaaattaTTTATAATAGTAGTGAGT
ATATGATTGAAAAGTCTTTTAATCAAATATAACAATCCTTTGGCTTCTAA
TTTAGCTTTCGATGTTATCATTTTagtctttttatttggagcttttCCTT
TTTTAACTGCTCTAGTTTTGACTG
Run BLAST on NCBI

transcript from alignment at sc0000041:383784..398641-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004285 ID=TCONS_00004285|Name=TCONS_00004285|organism=Clytia hemisphaerica|type=transcript|length=14858bp|location=Sequence derived from alignment at sc0000041:383784..398641- (Clytia hemisphaerica)
CGGCGATGGCTCAGTGGATAGAGCGCTGGCTTCCAAATCTGAAGGTCTTT CTTTGGTGGTGGTTCGAATCCCACTCGGTGCGATAATTAGGTTGGTCGAA ATTGATGGACAAATGATTGACAGGTATGAAAACTCAGTCAGAAATGAGAA ACTAAGTCTCAGAAACTCAGAAACTCAGACAGTCAGAAAAGAGAGAGACA GGATCAGAGATAAGAAAATAAAAAAAAAACATGAGGGTACTTTGGGTGAT CCGATGTAACTCTTTCCTGGGTAAATTGCCTAACCGATGGATAAATTGCC GAACAGTTAAAAAATGGTAGCCTGAGTAGCGAAAGATTTGAATTGTGGCA ACTAAGAAATTTTCACACTGGAACAGGAAACACCTTCGCTTCTCAAATTC GTTTAACATACCTCACGTAATTATATGTTGTTATTTTCTAACCCTTCTAA CTATGAAAACCCAGCCTTGATTGTTTTTTTTCACAGCAATCCATTTTACA AAGGTTCCCACTGATCTCACCACCAGTCTGGAAAGGAGGGAAATGTTACG CCGGAGCTGCGCCAACCTAACTGGGAAAAGTTGAGGGCAGCAGATCTCAA ACCTCAAATCTACGCCGGAGATATCCGGCGCACAAGCCGCAATGTCCAGA CTGGTCTCACCACTTTTTATTTTCCACACACACACATTTTATTTGGATGT CAACGCAACAACCCAATCCTGCTGATGCTGTTGCCCCGGACACCGGGGAT TTCCTTGTTGCATTCAGGGGATGTACTTTAACATTGGCTGATCACATGGG CGTCAATTTTGGCATCACTTTTCCAACTGCTTTCACACAAACTTAGACTT AGTCAACCTCACATCACACGACGTCTGCCCCCCCCCAATAAATGGCATAC CATTTAACTTGCATGCGATATGTGGTGAGCACAGTGCACAGAATCCGGCT GCCCCACGATTCACTTACCGTCAACTGCTCCAACTACGACCCTGCCTATG CGCCGGACAGTCCGGGGTTTTTTTGATGCGTGCCCGGGTATGGCGCGCCA AAAGGCTTTTTAATACTAACTTTTTTTTATAATACCAACTTTTTTTTATA ATACCAACTTTTTTTTATAATATCAACTTTTTTTTNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNACCCGGGGTCCGTATTATTTGTTTTTGA GAGACTACCCCGGACGCCCCAGACAGCCCGCGCGGTCGCTTTTTATAGAA TCGCTGACCGCGCGGGCTCGGCGATATACGTCCGGGGTAAATTTATGGCG CAAAAATTGGAGCCCCGGACATAGGTCCGGGGAAAAAGTTATTCTTTTCA GACCCCAGACATTTGCCCCGGGGCATAGGCAGGGTCGTCTCCAACTTGGG ACTATCTTACGCAACATGGGACGGCCATTTCCACCGCCATTTCATTCACC GAACCTCCAACAGAGTGTAGAAGGTGGCATGTATCCTAGGGTGGGTGGGT GTTTGAGAAAAAAATTTGTCATGTACTACCTGTGTACTATAATTGGGGTT TTGGGTCCAAAATCGATTTTGATTTTTACTACCTGTGTACCAGGGGGAGG GGGGTGAAGCAGTTAGTACAAGACATCATGCCTACTAACTGCTTTCTCGG AAGAACTTAGTAACACCACCACCTTGGTACACTTAGTACAGTTAGTACTA NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNACAGTTAGTACCAAAATTTGGC AAATTTTTAGCAGGGGACCACCCTTTTTTGCAGTTAGTACATCTGAGTAC TAAGTGACTTTATCCAATTCATATGGCACACTACCACGGTACTAACCGGC ATGATGTCTTGTAGTAACTGCTTCACCCCCCCCCCTGTGTGTACCAAAAT AGGAGTGTTGAGTCCAAAATTGATGTTAACAGTATGGGGTCCAAAATCGA TTTTGATTTTTACTACCTGTGTACCAAAATAGGGGTGTTGAGTCCAAAAT CGATGTTAACAGTATGGAAACAAAAAGGTTCAGAAATTATCTGCTAAAAT ATAAATGTAAAGTTGCTCTATTATAAATTGATCAAGCCAAGTTTGTCCAA GATCATTCTTCCAAACTTCTTGGAATGAATTGAAATCCTACCAGATCCCA CTGAAATGAAGGTTTATTGAGCAGTGCGTCACAAACAGCCATATAAACAA AACTCAACATTCTCACAAAAGTTGTCTTTTTGATTTCCCAAACATTCGTC TCAAGCGTTCATTTCCACAATAATTTATGTAATTGCAATTTTGGTCAGTC CACAGTCGGCTTCAACATATACATGTGTTTTTATTTACGTGACCGGAGTG CTTACTAAAACAATCCGGGGGTAAATGGCGAAGCAACACAGCAGATTATT CGTAAAGTAAAGAAATATCTTTTGGCATTGACAATCAAATATAATATATT ATACTATATTTCCTTAATTCAAAAATCAAAAATTCATTTTTCATTCCTAA AAAATAAAAATAAAAGAATAATGAATTAATATTACATACTAAGACGCCCC CGTCTTTTACTCTTGTTTAATTTCCGATCTCGGAACGTGCAAAATGCCCG TCCGCCCAATATCCACCCAATCAGCTTAAGTTCACTATAATTGTCCTTCG ACATTCAAAAAATGGTATTTAAAAATTATGAATTTATAATAATTACAAAA AACTAAAAGTTTGATACTTCATTAGTGAAATATTCAATAAATTTCTAGTT TCAATTTTCAGTGGGTGTTCTTCTAGGGCTTCGTTTATCGCGCAATTTTT GCGTCACACAAACTTTCTCGGCCGCTTGTCATAATTATGCATTGCCAAAT TTGGTTCTCCATTGTCAAGTCAGGATCGATGGTGACGTCACCTAAGCATA AAAAAGAAAGGATTTCATCATTTTTATGCATATATTAATTTACAAGATAT TCTATTCGCCGCGCGAGCGCACTTTTCGTAGACTAGTCGGAATACTTTCT GTTACTCGTGGGATTGATGGTAACTTTTCATCTTCGTTATTTTTAAAATG AAGCACAACCGAAAAAAAAGGAAACTTCAGAAAGTTGCGTATTTCCAGTG AGTAAACGATTCTGACAATTAACAAAATTGATGATGATGATTTTTTTCGG TCAGGCAAATGTCTCGTATGGGGGTTCTAGTCTTGACCCCTAAGCCTACG CGAGATTGAAGCGTTTGGGTAAACGAGTCAAAACTCCAAAAAAGCTGGTG TTTTGAAGCGCTTCCGTGCTATCGAAATATCGCTGTTTGTGACGCACTGT TGAGTCAATGTATTAAACATTCGAACATTCAAATTCGAACATTCGAACAT CAGAGGTGCAAACTCTCACCCATGGGGTGTGAGACTCATGTATTTCCACA TGGTCTCACGCAATTTTTGAAAAGTTTGATTTCTCACGCATTTTGGATTT TTGAGAAAAATTTTCCGATTTTTGGAAAACGTTTTCTCGATTTCCCGAGT TTCCAAAAAAAAGTTTCCCTGATTTCCCGATTTTTGTAAAAATGTTTACC TGATTTTCCGATTTTTTCCAGGTAGTACCCAGTAGTAAATGGGGGTATGG GGTGGTTTTGGTTTTTTTCCAGGGACTTCCTGGTAGTAAATAGGGGGTAT GGGGTGGTTTTGGGATTTTTCCATGTAGTATGGTGTACTTCAGGGGTGGG TGGGTGTAAAGTTTTGAAAAATACCTTGTAGTACACATACATGCTGCCTT CTAGTACACTGACCCCCTACCTCCAAAGTCATTTGATTTGAGTTTAATGA ACCGCGTACATGGTATCAGCCCCCCCAGAAATCTGAAGGGCACCTAGGCC AGGTTAGTAGAGGGGGCTAATGCCTTGCAATTCTTTGGGGTTACCTATTC ATTAAGAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNCATCTTTATAGCATAACAACAAAGCTTAT TAGCAGGCGTTCATGCGTGAGCATGATTTTAGGAATGACAAAAGAACAAA AAGTGTCAATTCAAAGAAATTTATCTGCTGAATAGGGGGTACCTAACTCA AAGCAATTTTTCAAGGGGACCTAACTCGTTGGGGGCACCATGCTTCATGG GGGCACCTGAAAAGTGGGCTGAAACCATGGCGTATTAAAAAATGCACGAT TTCTCTTTCGATTTTACAGTAAATGATAATACAGACCAGATATCAACAAG TCCCATGTTGCGTACGCTCGTCCCAAGTTGGAGCAGTTGACGGTATCTGG CCATGCGGTTGAAAGTCCAGGGATAGAAGAATTTGTTTCATTCCCCTGAA CATTTGCCCCATATTGGCCGGGGCATGCATTGGTGTAGGAGGGCCAGTTT TCAGAGCATGTCATGGTTGCCCCAAAGGAAAATTTCCAACATTAAAACTC TGCCCCTAAGATCCGCTTCCCACCACATAAAAAGCCAGAAAAACAGGTAA ATATAGCCAGTTTTCAATGATTTTGCCCCTGAACTGTGTATATTATTATC AACATTTTGCCCCTGCCCTTGAAGAGGCCCCCCAGCAGACCCTCAATTCA CGCAATCGCGCAATTCTTTTTCAAAATTCACGCATTCACTCAAATTTTCC TCAAGTTTCACGCAATAACCCGATTTTTCAGTAATTGGAAAAATTTTTGG GAAAAATCGGGGAAACATTGGAAAATCAGGAAAACTGCACATAGTAATTG GTGGAAAAAAGGGAAAATTCACGTACCTTATTGGTATTATATTTTGCGTG TTACAAAATTTCGCGGATATATACTGTATTTATTTCGCAATTTTTTTAGG CCAAATTTTGCCAAATTTAATACCGTTTAAATTTTTCAACAATAAAAAAT CGTGAAATTAAAAATACACACGAAAAATTTTCAAATAGGTCGAAAATCGA AAATACTTATTTGTTACACTTAGTTACTATTTTTGTCAATAGTTTTGTTA CTATATTTGGTATGTTTACACCTACGTTGTGTTTCAAGCGAAATAAGTCA TTTTCTTGCCTTATTCCCACTTTTTGAGAATATGCCCAATTTAAATTTAA TACACAAGAAAATTTCCAGAAACTGGCAATCGCAAAATTTAGTACACGCG AAAAACGTTTCCTCGAAAAAATTTCACGAATCGCGAAATTTTGTAACACG CGAAATATGATACCAATAAGGTATTCAAAATAGCCCAGATTCACGCATTC ACGCAAGTTTTTTCAATTCACGTATTCACGCATTTCTTTTTCAATTTTCA CGCATTCGCGCAACCGAAAATGCCCATTCACGCAACCGAAAATGCCCATT CACGCAACCGAAAATGCCCATTCACGCAACCGAAAATGCCCATTCACGCA ATCACGCAAACAGCTAGGGGGGCCCCTTAAAAAAAGGAGCAGTCTCTGCC CTTGAGATCTCAATGATTTCTGCCATACTCTGAAAACTGGTAGGAGGGGA GTGTAGGCAGGTGTGTAGGGGTCGTTATTGTCCTCTCAAGAGATTAATAC CATAAACTGCTCTAACTTGGGACTATCTGACAAAACATGGGACGGCAATT CGGCCACCATTTCACCAAACCTCCAAAGTCATTTTATTTGAGTTAATGAA CGACATATTAAAAAATACACAATTTCTCTTTTGCACCGAGTAGGCTTTTA AATCGAAATATGAAAAAAATCCGTAGTGGAACACACGCAAGTGTCTGTGC ACTCTAAGAGGAACGAAGAAGTATGATTGATAAACTTGGTGGAGTTATCA AAACAAATTTGTTGTCAAAGAGATTTAACAGTAAGTGAAAATACAGACCA GATATCAGCCAGTCCCATGTTTCGACCAATCGTCCCAAGTTAGAGCAGTT GACGGTAGTTGACTATGTTCCATTGGTTCGATTGATTTTCAATAACATTC GATTTTGTTTGATTGAGATTATGTTCGATGAGTTTGATTGCGATTAAATT AAATTAGATCACTCCTTTAAAGCTTTTTAGAGTGGGCGGCCGAGCGCTTA AGTATCGCACGAAAGCAAATAAAATCCAAATCAATCGAACATAATTGAAT ACAATCGAACGTAATTGAAGCAATCGAACGGCAAATCCTGGGTAATAATC GATTGCGATTCGATTGTGTTTGACAATCGAATTGCAATTATTCGATTGGG TTCAATTGCGTTCAATTGATTCAGCGTTCAATTCATTCGATTGACACCGT CTGGAGACAGTAGTGCACTCTTGCACTCTCTTGGTGGCAGTGTATCCATC ATACGTGCTGCTGATATGTGGGGTCTTCCTTGCTACTTTGCAGACCAGTA CTGAATGATCTTTATTTGAACTCAATTTTTTGTAAAAAAATTACAGTATC CAGGCGATTACTTAATCAAACAGAATTGACAATCGAACCAAATCAAATGC AGTTAGTCTCCATCAGGATTAGAAACTAGGCTAGTCTTATATACCTCTTT TATTTTAGGCGATTACTTAATCAAACAGAATTGACAATCGAACCAAATCA AATGCAGTTAGTCTCCATCAGGATTAGAAACTAGGCTAGTCTTATATACC TCTTTTATTTTTTCCTTTGCAACAATACAAGGTGACAAGTTGATACAACA CATTGACCACTCCCTGTTAAGTTTGTATCGAAATCTGCAACAAAAACAAA AGTGATCTCTTCTACTGATTGCTTTGTATTGTGGCGCTCCTTCGCGGAAT GTTTATCAAATTTCATCACTTCCTGATCCAGTGGTGATTGCATGTACTGC TACTTGTAAATACCAAAAATTACTTTCAATTCATTTTCTCATACAAAGAA GAAAGTTTGCACAATCATCATGACAACCATCACATCATGAAAAAGATGGG GTGTGGATACTCAAAGCTTCTATCAAAACAACACAAGTCTAGTACAAAGC CCTTCGATGAAGATGCTATGAGAGATAGACATGTTTCAACAGAATCAAAG GAAAATCCATCATCTCAAGGTATTATTTTGTTCACTATTTTGTTTTGTTC AAATGTATCCGATGACAAAAATTTCAACTTAAACAGTAGCTTCATTTTTT CTGTCTTATCTATCAATTTGCTACTTCTACATTTTAAATTTTCTCTCTGA TATAAGATTAAGGATGACTTTACTTTCAAGAATCTGAATTTTTTATGAGA CAAAGAGTAGTTTAAAATTTTGAAATGCTATGCTTTCTTTAGAGACATAG GTTAAATTTGAAGTAAACATACCATTTTTAATAAACTTTAAAATGGGAAG ATGTTCGAAAATTTAATGAATTTATTTAATGTTTTCAGGTCATCAAGATG TCTCCAAAACTAGTAATCACTTTACAATACCAAGTATTGATGATTTACCA CTAAACAAAGATAGTTGCATAACTATGCATGATTTGTACAATCTTTTAAA TGATGGTGCTATGAAAATGTACATTCATGATCCATTTAACCTTTTGCTAA TTGATGGTAGAGAACTGGATTTATATTCCACGCAACATGTCATAACAGCA AAACATCATTCAATCTTTGGATCAGATAGCAATTTTGTTTTGAGACTTTC AAATTATGGAATGGTGATTATTTATGGGTCAGAGCTGCAAGTGAATAAAT CGTCAACTGATTCATTGTTAAAATTGCGGGCTGAAGTACAAGAATATGTA GCAAGTGATGTTTTAGTGTTAGTGGAAGGTTTCGATCAATTTCATTTGAA CTACCCCTTTCTATGCACTGATAAACTCATAGAAACAGTTGCTGATCGAA AAGAGCTGCTGTGTTACCCATCTATGGTATTGGATTCTAAGCTTTTTCAA GGGCGAGGTGACCAAGCTACCAATGAGAATATTATTGATGTTTTGAAAAT TACTCACATTGTGAATATCACCTTGGAACATCAAAACGCTTTTCCAAAAA AGGTTAAGTATTTCCGATTGGAACTAGACGATGTTGGGGAGTCAAACTTA TTCGAACATTTCCATAAAACATCTGATTTTATAAATGAAGCACTTTCCAC GAAGATTGGTCGAGTATTAGTTCATTGCAACATGGGTGTTAGCCGAAGCT CTACAATCACTTTAGCTTATCTCATGAAGTACAAACAATGGAGTCTGGAT CTTGCGTTCAAAACCTTAAAATCCAGAAGATCTTGCGCTGCGCCTAATGA TGGTTTCTTGCAACAGCTCTCTAAGTGGGAAATAGAGATGCTGGGACAAA AACTCACTGATATCGATTCCCTGTTTTAAGTTTCTGAAATTCTGAATTGG GTGTAGTTTTGTCCCGTTAAATTCTAGAATTCTAGTTTAAAACACTTGCA TCAGTTTGAAGTACTTGATTAGACTCTTCCTTTTCCTTTGTTTTATCTTT TGTAGACGTATGGTCAAACCTAGTTTGTGTCGTAAAGCTGTAGTATTTGA TCGGTTTGATTGGTTTTTATTAAAATTATAGTTTTGATACTTTTTCATAT CTATTTAATAGAAAGTTTGTGAATAANGTCTATGGTATTGGATTCTAAGC TTTTTCAAGGGCGAGGTGACCAAGCTACCAATGAGAATATTATTGATGTT TTGAAAATTACTCACATTGTGAATATCACCTTGGAACATCAAAACGCTTT TCCAAAAAAGGTTAAGTATTTCCGATTGGAACTAGACGATGTTGGGGAGT CAAACTTATTCGAACATTTCCATAAAACATCTGATTTTATAAATGAAGCA CTTTCCACGAAGATTGGTCGAGTATTAGTTCATTGCAACATGGGTGTTAG CCGAAGCTCTACAATCACTTTAGCTTATCTCATGAAGTACAAACAATGGA GTCTGGATCTTGCGTTCAAAACCTTAAAATCCAGAAGATCTTGCGCTGCG CCTAATGATGGTTTCTTGCAACAGCTCTCTAAGTGGGAAATAGAGATGCT GGGACAAAAACTCACTGATATCGATTCCCTGTTTTAAGTTTCTGAAATTC TGAATTGGGTGTAGTTTTGTCCCGTTAAATTCTAGAATTCTAGTTTAAAA CACTTGCATCAGTTTGAAGTACTTGATTAGACTCTTCCTTTTCCTTTGTT TTATCTTTTGTAGACGTATGGTCAAACCTAGTTTGTGTCGTAAAGCTGTA GTATTTGATCGGTTTGATTGGTTTTTATTAAAATTATAGTTTTGATACTT TTTCATATCTATTTAATAGAAAGTTTGTGAATAACATTGAAGAATATTTT GTAAGATATAATAGCTATTTATAATGAACATTGTGGCATAATTTATAATT TTTAGATATTAATGATTTTTGTATATAAAAGAATGTTAATTCCTTGACAG GTGATTGTTAGCTCTGGTGAAATATCAACTTCACTGAGAAACACTTTTGC TTTGTTGAAGTCATAAAATAATTTACTCTTCACTCTTTCAAGCAACCAGA GATTTAAAAACATTGGCTTTTGGTTTCCATTTATTTATTTAATAGTTTAG ATTTATTATTTTCTGGTCTTAAATAGTTTTCACAAATTTTTATTTGTTTG CTCTGGGTTAATCTTTCTAGCTTAGCGGGTGTTGCTCATTATTTCAATTT TTAAGATATTAAATTATTTATAATAGTAGTGAGTATATGATTGAAAAGTC TTTTAATCAAATATAACAATCCTTTGGCTTCTAATTTAGCTTTCGATGTT ATCATTTTAGTCTTTTTATTTGGAGCTTTTCCTTTTTTAACTGCTCTAGT TTTGACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002379XLOC_002379Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004285-exon-sc0000041-1575043694:398226..398641TCONS_00004285-exon-sc0000041-1575043694:398226..398641Clytia hemisphaericaexon
TCONS_00004285-exon-sc0000041-1575043694:386523..386910TCONS_00004285-exon-sc0000041-1575043694:386523..386910Clytia hemisphaericaexon
TCONS_00004285-exon-sc0000041-1575043694:383784..386203TCONS_00004285-exon-sc0000041-1575043694:383784..386203Clytia hemisphaericaexon
TCONS_00004285-exon-sc0000041-1510915933:398226..398641TCONS_00004285-exon-sc0000041-1510915933:398226..398641Clytia hemisphaericaexon
TCONS_00004285-exon-sc0000041-1510915933:386523..386910TCONS_00004285-exon-sc0000041-1510915933:386523..386910Clytia hemisphaericaexon
TCONS_00004285-exon-sc0000041-1510915933:383784..386203TCONS_00004285-exon-sc0000041-1510915933:383784..386203Clytia hemisphaericaexon
TCONS_00004285-exon-sc0000041-1491911889:398226..398641TCONS_00004285-exon-sc0000041-1491911889:398226..398641Clytia hemisphaericaexon
TCONS_00004285-exon-sc0000041-1491911889:386523..386910TCONS_00004285-exon-sc0000041-1491911889:386523..386910Clytia hemisphaericaexon
TCONS_00004285-exon-sc0000041-1491911889:383784..386203TCONS_00004285-exon-sc0000041-1491911889:383784..386203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:383784..398641 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 1.14917e-09 8.15934e-09 0 5.34641e-05 0 0 0 0 0 0 0 0 2.10971e-09 0.443832 2.34671e-06 2.78152e-08 0.346239 0.300628 0 0 0 0 0.921034 0.0214555
Blast
BLAST of TCONS_00004285 vs. Swiss-Prot (Human)
Match: DUS1 (Dual specificity protein phosphatase 1 OS=Homo sapiens GN=DUSP1 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.040e-22
Identity = 74/257 (28.79%), Postives = 125/257 (48.64%), Query Frame = 3
Query: 1134 LKLRAEVQEYVASDVLVLVEGFDQFHLNYPFLCTDK---------LIETVADRKELLCY-----------PSMVLDSKLFQGRGDQATNENIIDVLKITHIVNITLEHQNAFPKKVKYFRLELDDVGESNLFEHFHKTSDFINEALSTKIGRVLVHCNMGVSRSSTITLAYLMKYKQWSLDLAFKTLKSRRSCAAPNDGFLQQLSKWEIEMLG---------QKLTDIDSLF*VSEILNWV*FCPVKF*NSSLKHLH 1817
            L   A  +E  A+ V  L  G++ F  + P LC+ +         L  +V D  E  C            P  +L   L+ G    A+ ++++D L IT ++N++    N F    +Y  + ++D  ++++   F++  DFI +++    GRV VHC  G+SRS+TI LAYLM+  +  LD AF+ +K RRS  +PN  F+ QL ++E ++L            +  +D     + + N+    PV   NS+L +L 
Sbjct:  104 LAAGALCREARAAQVFFLKGGYEAFSASCPELCSKQSTPMGLSLPLSTSVPDSAESGCSSCSTPLYDQGGPVEILP-FLYLGSAYHASRKDMLDALGITALINVSANCPNHFEGHYQYKSIPVEDNHKADISSWFNEAIDFI-DSIKNAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAPHCSAEAGSPAMAVLDRGTSTTTVFNFPVSIPVHSTNSALSYLQ 358          

HSP 2 Score: 93.9745 bits (232), Expect = 2.955e-20
Identity = 56/179 (31.28%), Postives = 98/179 (54.75%), Query Frame = 3
Query: 2016 LFQGRGDQATNENIIDVLKITHIVNITLEHQNAFPKKVKYFRLELDDVGESNLFEHFHKTSDFINEALSTKIGRVLVHCNMGVSRSSTITLAYLMKYKQWSLDLAFKTLKSRRSCAAPNDGFLQQLSKWEIEMLG---------QKLTDIDSLF*VSEILNWV*FCPVKF*NSSLKHLH 2525
            L+ G    A+ ++++D L IT ++N++    N F    +Y  + ++D  ++++   F++  DFI +++    GRV VHC  G+SRS+TI LAYLM+  +  LD AF+ +K RRS  +PN  F+ QL ++E ++L            +  +D     + + N+    PV   NS+L +L 
Sbjct:  181 LYLGSAYHASRKDMLDALGITALINVSANCPNHFEGHYQYKSIPVEDNHKADISSWFNEAIDFI-DSIKNAGGRVFVHCQAGISRSATICLAYLMRTNRVKLDEAFEFVKQRRSIISPNFSFMGQLLQFESQVLAPHCSAEAGSPAMAVLDRGTSTTTVFNFPVSIPVHSTNSALSYLQ 358          
The following BLAST results are available for this feature:
BLAST of TCONS_00004285 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DUS11.040e-2228.79Dual specificity protein phosphatase 1 OS=Homo sap... [more]
back to top