TCONS_00004280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004280
Unique NameTCONS_00004280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1644

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004280 ID=TCONS_00004280|Name=TCONS_00004280|organism=Clytia hemisphaerica|type=transcript|length=1644bp
GTTCAAAAGAACCTAAAACTGGTATTTTTTGCATTAAAGAATCGAAAATG
TTCGATGATTTCGAACTTTGAACTCAGTATTTAGACGTAAGATTTTTTGT
TGGAAACTGAGAGACAAATCGCATCAGCTCAGACGAGTTTTTATTCAGTC
GAAATAAAATGAATGTACAAAAATTAATCGCTCACTAATTAAAATGATTT
GTATGACGTTATTAATTAGCTCATCCTTTTTTTAACAGAAGGGATATCat
taatgaaaagaaaaatagattagatggatcaaaaattataaaacgGTTTG
CCGGTTTTCAATTCTCGTCATTTTAAAAACTATCGAGTTGAAACTCGATA
CTGTGCGAATTCAATTCAGTTTTTTCATTCTAAACGTCTTTCCTACGCAG
TAGTACCAAAGGGAaagaaaaattctcttttcgGAATATTGGTGTATTGC
GGTTCTTATCAGTGATAAATCAAATCATCTTATAGAAATTGTTGTCAATA
AAGTTATTTTTACTGGAAGTTCAATTCACTTGATTTTTGAGGGCTGAGGA
AAGATGAAGACAGCTACCATGTTGAATGATTTGAATGGAGTTTCGTCCTC
ATTCTCCATGGAAGAGAAAGTAGCAAGAGTTGTGGTGCTCGGACGCAAAG
GTGTTGGCAAAACTGCTTTGGTAGTGCGGTGTCTGACCAAACGATTTCTG
CCAGAGTACGCCCCTTGTCACGAAACGTACTACAAATACAGGAACCGTGA
CTTGAAGAAAGACGGCAAGGAACTTGAAATGTTGATCATTGATTCGGACG
GACAGaacAACGACATTTACCTCAATTCTGAAGCGTTCATCTTAGTTTAC
TCTGTGACGTCACGTAAAAGTTTGGAGAGCATCGAAGCTATTATTCGGAA
GATTAGGATCTTGAATCGGAACGAGGCTGCAATTATTATCGTAGCTAATC
AAATCGATCTCATTCAGAAACGTGAGGTATCTACGTATGACGGGGTCACC
ATGGCAACCAAACATCAAGCAGAATATTACGAAGTCTCCGTCGCAAACGA
CGTCGAACAAGTTGTCGAACTTTTTAACAAAGTGTGTCAACGAATTGCAG
TGGACACtaagaacaaaacaaaaaccaCGCAGAAAATTATCGATATGTTT
AAAAGACGTGGCTCGACGTGAACGTAACacctgttcttaatttcaaatCG
AATGCCaagagaaatttttcaaatgatttCAACAAAGCACAATTAACACT
AGTAGTTTTCCTCTGACGCAGGAATGATAAACATTGCAAGGTATATGCAT
AAGTGGAAAGGCTGGTCTTTGCCATATTTCTTTAAGTCGAATGGAGAAGT
CATTAGATTCTATTGACTGACATTTGTAGTCTAAAACTTATTGtaaaaca
tttcattttaaagacAAGCTTGAATTTtagcaaaactattttattttgaa
aaattgagttCAACGctgattcaattttcaaatatttgattgtctttttt
ataaaaatgttgattGTAAAATATAGAGAATATATCATatatataaaata
aattaacacggatgtggagcaagattggtaactatatcagcataatataa
caataggcagtgatataaatttacaattggtttaaaggttttgt
Run BLAST on NCBI

protein sequence of TCONS_00004280-protein

>TCONS_00004280-protein ID=TCONS_00004280-protein|Name=TCONS_00004280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=205bp
MKTATMLNDLNGVSSSFSMEEKVARVVVLGRKGVGKTALVVRCLTKRFLP
EYAPCHETYYKYRNRDLKKDGKELEMLIIDSDGQNNDIYLNSEAFILVYS
VTSRKSLESIEAIIRKIRILNRNEAAIIIVANQIDLIQKREVSTYDGVTM
ATKHQAEYYEVSVANDVEQVVELFNKVCQRIAVDTKNKTKTTQKIIDMFK
RRGST
Run BLAST on NCBI

transcript from alignment at sc0000041:371386..375403-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004280 ID=TCONS_00004280|Name=TCONS_00004280|organism=Clytia hemisphaerica|type=transcript|length=4018bp|location=Sequence derived from alignment at sc0000041:371386..375403- (Clytia hemisphaerica)
GTTCAAAAGAACCTAAAACTGGTATTTTTTGCATTAAAGAATCGAAAATG
TTCGATGATTTCGAACTTTGAACTCAGTATTTAGACGTAAGATTTTTTGT
TGGAAACTGAGAGACAAATCGCATCAGCTCAGACGAGTTTTTATTCAGTC
GAAATAAAATGAATGTACAAAAATTAATCGCTCACTAATTAAAATGATTT
GTATGACGTTATTAATTAGCTCATCCTTTTTTTAACAGAAGGGATATCAT
TAATGAAAAGAAAAATAGATTAGATGGATCAAAAATTATAAAACGGTTTG
CCGGTTTTCAATTCTCGTCATTTTAAAAACTATCGAGTTGAAACTCGATA
CTGTGCGAATTCAATTCAGTTTTTTCATTCTAAACGTCTTTCCTACGCAG
TAGTACCAAAGGGAAAGAAAAATTCTCTTTTCGGAATATTGGTGTATTGC
GGTTCTTATCAGTGATAAATCAAATCATCTTATAGAAATTGTTGTCAATA
AAGTTATTTTTACTGGAAGTTCAATTCACTTGATTTTTGAGGGCTGAGGA
AAGATGAAGACAGCTACCATGTTGAATGATTTGAATGGAGTTTCGTCCTC
ATTCTCCATGGAAGAGAAAGTAGCAAGAGTTGTGGTGCTCGGACGCAAAG
GTGTTGGCAAAACTGGTAAGTCTGTTCAATGTTTGGATTTTTTACTGTAC
CATTTGAATATTGTATAAGTTCTTTAAAGGGGAAATGATGAGGTCTGGAA
ATCATCACTAAACTGATATTGAAATATGAAAGAGCTCATAAAGACGATTC
CAAAAATATATGGTTCATAGGGGTTTACTATTTTAAATGTTTAGAGCTCT
CAGAAATCCAGAAGGCATACTCGAAAGTACAGTACAGTGGAATTCCCATT
CTGGATTGGATGAGAGCAACGAGTAATGAAATCTGGGCGGCATTTATTTC
ATCGGGAACATTTCTAACTAATTTTTTTCTAGGAGGATATCATATTTGGC
CATTGTTACGGTGGCGTATCCCTTGCGCGGTTCTATTTAGCAAGAATCTA
AGCTTGTTTGTCGATAAAGCATAAACAATCGCGAAAATCTTTAGAACGAT
ATTTCAATTAGCTATTCGGAAAAAGTAATTAAAAATATTTACACCATAAT
TTCTTTAAAATAAGACATTGTGGGACACTCATCAACAAATGGGATGCAAT
TACTCCTCGCTTTTCCCCTCGGGTAGGAAATTGGAAGATTTTCCCGTTTG
CGGAGGTCGATAATATTCTTTTTGTTTTTCTGCCATCGATTGATTGAATA
GGCCTCGAAATTGAATAAATAAGAGACGTTAGGATAATTGACCGATCATG
AAGTAATGACTATAGGTTTATTAATTATTTCAAACAAAAATACACTAATA
AGCCTTCTTAATCTGGTTCTCAATTGAAAACATTGAAATCAGATTTGCTG
AAAGAATTAGAAGTATTTAAAGCACTCCCACTTTTTTCACCACCATATTA
CTATCTTTTACCACGCCTTCAAATGATAAATTTCTGAATTTAAAACCAAC
AATATCAACTTGAAATGGTATTATATAACTTAGATATTTTGTGCTATATT
ATCTGGAGTCAGGAGTTGTAATGTTTCTGAGATCTACAATCAGTGCCATA
ATATATTGGCACTTTTGGCTAATTTACCATTTTTCGAAAATTGAAGTTCA
ACGAGAATGTCATTTTTTACGCCTTCAACTTGATTTCATCGATTATTTCG
ATCAGGGAGGGAGTTATTGGTTTCTAGGCTATATTACAAGCCCTACTGGA
CCATTTTTTATCTTTTGGATCCTCAGATCCTAAAGTCCTAAGTCTTAAGT
CTCATGTTAAAACTCTACCCTTCGAACCTACTTTAGAGCACTTACAAATC
GATTGTGGTTTCAAAACACCCCAGTGAATTTCCCTTTTATGCCAAGTATT
TTGTGACTGATTGCACACGTTTTTTTATTTTAAAGAATGTACATGATGAA
AATGGCCAAAAATTTAAGAATAAAAGNATTTCACATTGAAGTGTCGAAAC
AGTGCATACAATTTGTTTGAGAAAACTAATGAGCTTATAATCATACGCTA
AATGCACTATAAATAGACTTTACCTTGACCTCTTTTCAAGCAATTAAGTC
TTACTCTATCATCAGATGTCATACACGGTTTTTCATCGAGTTTACATAAA
CGTCATACACTTATACAATTGTGAAAAGAAATACTGCTAGAATGCATGTT
AACCCAAGAATTTGAGAAGTTTTAAGCCTTTGTCAAATACAAGGCTTCTT
GAAAAATGTTTTTTTAACCAATAAAGTACAAGCCCGAAGGGAGAATCGAA
TCTTTAACATTTCTCAGGCAAGAAAAGGTGAAGCCTTAAAATATGCGCCG
TATAAATTTTAATTTCAATCTGTTATTTGTGTAAAAACCAGGTGGACCGC
GCTAGGCCGCGCAACTTTGGTAGGATTTGGTAGGCTTCAAACCCTACCAC
GGAGATTTGATTCTAGCCTTCCGGGCTTATACTTCATTGTTTTTAACCAT
AGAAGTCTCTATATATTTCTTTCCTCTCTCAACAGCTTTGGTAGTGCGGT
GTCTGACCAAACGATTTCTGCCAGAGTACGCCCCTTGTCACGAAACGTAC
TACAAATACAGGAACCGTGACTTGAAGAAAGACGGCAAGGAACTTGAAAT
GTTGATCATTGATTCGGACGGACAGGTAAAATCCATTATACGTCACCCTA
CTCATCATCTTCCATTCAATTACACGTTCTTTTATAAGAACATCCAAAGT
TTTTGAAGCCTAAAAATGTTCTTTTTTTGAGCATTTTGGTCCATTTTCCT
AAGAAATTGGGGTATTTTAGAGTCATCAAAGCTATAAAATGTTCTTAACT
TGTTCTTAACATTTTGGCCATCGAAGCCTTATGTTCTTATATAGTTTGCT
CGTATAAAAAACATGTAGCCCTTTACCAAAACTAAGCAGACCTGATCAGC
CTTGCTCTACAAGTAAGAAAATGATAAATCAAACCAAAGCATTGCATTCT
AGATTTAGAACGCCATGAACCAAAGTCATTCCTAAAAAATGATCCTCGAT
AAGATCAAAGAGTCAAAATCTTTACCAATGAGACAGGGGTGTGATAAAAA
TCTTCAATAGCATGTACTTTTTATTTCAGAACAACGACATTTACCTCAAT
TCTGAAGCGTTCATCTTAGTTTACTCTGTGACGTCACGTAAAAGTTTGGA
GAGCATCGAAGCTATTATTCGGAAGATTAGGATCTTGAATCGGAACGAGG
CTGCAATTATTATCGTAGCTAATCAAATCGATCTCATTCAGAAACGTGAG
GTATCTACGTATGACGGGGTCACCATGGCAACCAAACATCAAGCAGAATA
TTACGAAGTCTCCGTCGCAAACGACGTCGAACAAGTTGTCGAACTTTTTA
ACAAAGTGTGTCAACGAATTGCAGTGGACACTAAGAACAAAACAAAAACC
ACGCAGAAAATTATCGATATGTTTAAAAGACGTGGCTCGACGTGAACGTA
ACACCTGTTCTTAATTTCAAATCGAATGCCAAGAGAAATTTTTCAAATGA
TTTCAACAAAGCACAATTAACACTAGTAGTTTTCCTCTGACGCAGGAATG
ATAAACATTGCAAGGTATATGCATAAGTGGAAAGGCTGGTCTTTGCCATA
TTTCTTTAAGTCGAATGGAGAAGTCATTAGATTCTATTGACTGACATTTG
TAGTCTAAAACTTATTGTAAAACATTTCATTTTAAAGACAAGCTTGAATT
TTAGCAAAACTATTTTATTTTGAAAAATTGAGTTCAACGCTGATTCAATT
TTCAAATATTTGATTGTCTTTTTTATAAAAATGTTGATTGTAAAATATAG
AGAATATATCATATATATAAAATAAATTAACACGGATGTGGAGCAAGATT
GGTAACTATATCAGCATAATATAACAATAGGCAGTGATATAAATTTACAA
TTGGTTTAAAGGTTTTGT

Coding sequence (CDS) from alignment at sc0000041:371386..375403-

>TCONS_00004280 ID=TCONS_00004280|Name=TCONS_00004280|organism=Clytia hemisphaerica|type=CDS|length=1854bp|location=Sequence derived from alignment at sc0000041:371386..375403- (Clytia hemisphaerica)
AACAACGACATTTACCTCAATTCTGAAGCGTTCATCTTAGTTTACTCTGT
GACGTCACGTAAAAGTTTGGAGAGCATCGAAGCTATTATTCGGAAGATTA
GGATCTTGAATCGGAACGAGGCTGCAATTATTATCGTAGCTAATCAAATC
GATCTCATTCAGAAACGTGAGGTATCTACGTATGACGGGGTCACCATGGC
AACCAAACATCAAGCAGAATATTACGAAGTCTCCGTCGCAAACGACGTCG
AACAAGTTGTCGAACTTTTTAACAAAGTGTGTCAACGAATTGCAGTGGAC
ACTAAGAACAAAACAAAAACCACGCAGAAAATTATCGATATGTTTAAAAG
ACGTGGCTCGACGTGACTTTGGTAGTGCGGTGTCTGACCAAACGATTTCT
GCCAGAGTACGCCCCTTGTCACGAAACGTACTACAAATACAGGAACCGTG
ACTTGAAGAAAGACGGCAAGGAACTTGAAATGTTGATCATTGATTCGGAC
GGACAGATGAAGACAGCTACCATGTTGAATGATTTGAATGGAGTTTCGTC
CTCATTCTCCATGGAAGAGAAAGTAGCAAGAGTTGTGGTGCTCGGACGCA
AAGGTGTTGGCAAAACTGAACAACGACATTTACCTCAATTCTGAAGCGTT
CATCTTAGTTTACTCTGTGACGTCACGTAAAAGTTTGGAGAGCATCGAAG
CTATTATTCGGAAGATTAGGATCTTGAATCGGAACGAGGCTGCAATTATT
ATCGTAGCTAATCAAATCGATCTCATTCAGAAACGTGAGGTATCTACGTA
TGACGGGGTCACCATGGCAACCAAACATCAAGCAGAATATTACGAAGTCT
CCGTCGCAAACGACGTCGAACAAGTTGTCGAACTTTTTAACAAAGTGTGT
CAACGAATTGCAGTGGACACTAAGAACAAAACAAAAACCACGCAGAAAAT
TATCGATATGTTTAAAAGACGTGGCTCGACGTGACTTTGGTAGTGCGGTG
TCTGACCAAACGATTTCTGCCAGAGTACGCCCCTTGTCACGAAACGTACT
ACAAATACAGGAACCGTGACTTGAAGAAAGACGGCAAGGAACTTGAAATG
TTGATCATTGATTCGGACGGACAGATGAAGACAGCTACCATGTTGAATGA
TTTGAATGGAGTTTCGTCCTCATTCTCCATGGAAGAGAAAGTAGCAAGAG
TTGTGGTGCTCGGACGCAAAGGTGTTGGCAAAACTGAACAACGACATTTA
CCTCAATTCTGAAGCGTTCATCTTAGTTTACTCTGTGACGTCACGTAAAA
GTTTGGAGAGCATCGAAGCTATTATTCGGAAGATTAGGATCTTGAATCGG
AACGAGGCTGCAATTATTATCGTAGCTAATCAAATCGATCTCATTCAGAA
ACGTGAGGTATCTACGTATGACGGGGTCACCATGGCAACCAAACATCAAG
CAGAATATTACGAAGTCTCCGTCGCAAACGACGTCGAACAAGTTGTCGAA
CTTTTTAACAAAGTGTGTCAACGAATTGCAGTGGACACTAAGAACAAAAC
AAAAACCACGCAGAAAATTATCGATATGTTTAAAAGACGTGGCTCGACGT
GACTTTGGTAGTGCGGTGTCTGACCAAACGATTTCTGCCAGAGTACGCCC
CTTGTCACGAAACGTACTACAAATACAGGAACCGTGACTTGAAGAAAGAC
GGCAAGGAACTTGAAATGTTGATCATTGATTCGGACGGACAGATGAAGAC
AGCTACCATGTTGAATGATTTGAATGGAGTTTCGTCCTCATTCTCCATGG
AAGAGAAAGTAGCAAGAGTTGTGGTGCTCGGACGCAAAGGTGTTGGCAAA
ACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002377XLOC_002377Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004280-proteinTCONS_00004280-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004280-exon-sc0000041-1575043694:374739..375403TCONS_00004280-exon-sc0000041-1575043694:374739..375403Clytia hemisphaericaexon
TCONS_00004280-exon-sc0000041-1575043694:372679..372818TCONS_00004280-exon-sc0000041-1575043694:372679..372818Clytia hemisphaericaexon
TCONS_00004280-exon-sc0000041-1575043694:371386..372224TCONS_00004280-exon-sc0000041-1575043694:371386..372224Clytia hemisphaericaexon
TCONS_00004280-exon-sc0000041-1510915933:374739..375403TCONS_00004280-exon-sc0000041-1510915933:374739..375403Clytia hemisphaericaexon
TCONS_00004280-exon-sc0000041-1510915933:372679..372818TCONS_00004280-exon-sc0000041-1510915933:372679..372818Clytia hemisphaericaexon
TCONS_00004280-exon-sc0000041-1510915933:371386..372224TCONS_00004280-exon-sc0000041-1510915933:371386..372224Clytia hemisphaericaexon
TCONS_00004280-exon-sc0000041-1491911889:374739..375403TCONS_00004280-exon-sc0000041-1491911889:374739..375403Clytia hemisphaericaexon
TCONS_00004280-exon-sc0000041-1491911889:372679..372818TCONS_00004280-exon-sc0000041-1491911889:372679..372818Clytia hemisphaericaexon
TCONS_00004280-exon-sc0000041-1491911889:371386..372224TCONS_00004280-exon-sc0000041-1491911889:371386..372224Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:371386..375403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.222508	0.313417	0.19595	0.0547732	0.733493	0.3425	4.25926	4.46358	13.8336	11.6385	10.8207	12.8595	3.23919	3.1761	1.50213	0.873805	1.98588	3.40511	9.56638	11.2756	4.37439	4.3373	2.35281	4.48426	5.14957	4.26421	2.71203	0.651229	0	0.0279578
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00004280 vs. Swiss-Prot (Human)
Match: RERG (Ras-related and estrogen-regulated growth inhibitor OS=Homo sapiens GN=RERG PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.443e-17
Identity = 51/153 (33.33%), Postives = 83/153 (54.25%), Query Frame = 2 
Query:  662 TALVVRCLTKRFLPEYAPCHETYYKYRNRDLKKDGKELEMLIIDSDGQNNDIYLNS-----EAFILVYSVTSRKSLESI---EAIIRKIRILNRNEAAIIIVANQIDLIQKREVSTYDGVTMATKHQAEYYEVSVANDVEQVVELFNKVCQRI 1096
            +ALVVR LTKRF+ EY P  E+ Y+++      D + + M I+D+ GQ + I         E F+LVY +T R S E +   + I+ +I+        +I+V N+ DL   R+VST +G  +AT+    +YE S       + E+F ++C+ +
Sbjct:   20 SALVVRFLTKRFIWEYDPTLESTYRHQ---ATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 167
The following BLAST results are available for this feature:
BLAST of TCONS_00004280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RERG5.443e-1733.33Ras-related and estrogen-regulated growth inhibito... [more]
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